Type: Package Package: tidybulk Title: Brings transcriptomics to the tidyverse Version: 1.10.1 Authors@R: c(person("Stefano", "Mangiola", email = "mangiolastefano@gmail.com", role = c("aut", "cre")), person("Maria", "Doyle", email = "Maria.Doyle@petermac.org", role = c("ctb")) ) Description: This is a collection of utility functions that allow to perform exploration of and calculations to RNA sequencing data, in a modular, pipe-friendly and tidy fashion. License: GPL-3 Depends: R (>= 4.1.0) Imports: tibble, readr, dplyr, magrittr, tidyr, stringi, stringr, rlang, purrr, tidyselect, preprocessCore, stats, parallel, utils, lifecycle, scales, SummarizedExperiment, GenomicRanges, methods, S4Vectors, crayon Suggests: BiocStyle, testthat, vctrs, AnnotationDbi, BiocManager, Rsubread, e1071, edgeR, limma, org.Hs.eg.db, org.Mm.eg.db, sva, GGally, knitr, qpdf, covr, Seurat, KernSmooth, Rtsne, ggplot2, widyr, clusterProfiler, msigdbr, DESeq2, broom, survival, boot, betareg, tidyHeatmap, pasilla, ggrepel, devtools, functional, survminer, tidySummarizedExperiment, markdown, uwot, matrixStats, igraph, EGSEA VignetteBuilder: knitr RdMacros: lifecycle Biarch: true biocViews: AssayDomain, Infrastructure, RNASeq, DifferentialExpression, GeneExpression, Normalization, Clustering, QualityControl, Sequencing, Transcription, Transcriptomics Encoding: UTF-8 LazyData: true RoxygenNote: 7.2.0 LazyDataCompression: xz URL: https://github.com/stemangiola/tidybulk BugReports: https://github.com/stemangiola/tidybulk/issues git_url: https://git.bioconductor.org/packages/tidybulk git_branch: RELEASE_3_16 git_last_commit: a2fae5d git_last_commit_date: 2023-03-14 Date/Publication: 2023-03-15 NeedsCompilation: no Packaged: 2023-03-15 22:20:04 UTC; biocbuild Author: Stefano Mangiola [aut, cre], Maria Doyle [ctb] Maintainer: Stefano Mangiola Built: R 4.2.3; ; 2024-03-22 20:15:45 UTC; unix