A collection of pre-processing functions

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Documentation for package ‘preprocessCore’ version 1.60.2

• DESCRIPTION file.

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colSummarizeAvg	Summarize the column of matrices
colSummarizeAvgLog	Summarize the column of matrices
colSummarizeBiweight	Summarize the column of matrices
colSummarizeBiweightLog	Summarize the column of matrices
colSummarizeLogAvg	Summarize the column of matrices
colSummarizeLogMedian	Summarize the column of matrices
colSummarizeMedian	Summarize the column of matrices
colSummarizeMedianLog	Summarize the column of matrices
colSummarizeMedianpolish	Summarize the column of matrices
colSummarizeMedianpolishLog	Summarize the column of matrices
convert.group.labels	Summarize columns when divided into groups of rows
normalize.AffyBatch.quantiles.robust	Robust Quantile Normalization
normalize.quantiles	Quantile Normalization
normalize.quantiles.determine.target	Quantile Normalization using a specified target distribution vector
normalize.quantiles.in.blocks	Quantile Normalization carried out separately within blocks of rows
normalize.quantiles.robust	Robust Quantile Normalization
normalize.quantiles.use.target	Quantile Normalization using a specified target distribution vector
rcModelMedianPolish	Fit row-column model to a matrix
rcModelPLM	Fit row-column model to a matrix
rcModelPLMd	Fit robust row-column models to a matrix
rcModelPLMr	Fit robust row-column models to a matrix
rcModelPLMrc	Fit robust row-column models to a matrix
rcModelPLMrr	Fit robust row-column models to a matrix
rcModelWPLM	Fit row-column model to a matrix
rcModelWPLMr	Fit robust row-column models to a matrix
rcModelWPLMrc	Fit robust row-column models to a matrix
rcModelWPLMrr	Fit robust row-column models to a matrix
rma.background.correct	RMA Background Correction
subColSummarizeAvg	Summarize columns when divided into groups of rows
subColSummarizeAvgLog	Summarize columns when divided into groups of rows
subColSummarizeBiweight	Summarize columns when divided into groups of rows
subColSummarizeBiweightLog	Summarize columns when divided into groups of rows
subColSummarizeLogAvg	Summarize columns when divided into groups of rows
subColSummarizeLogMedian	Summarize columns when divided into groups of rows
subColSummarizeMedian	Summarize columns when divided into groups of rows
subColSummarizeMedianLog	Summarize columns when divided into groups of rows
subColSummarizeMedianpolish	Summarize columns when divided into groups of rows
subColSummarizeMedianpolishLog	Summarize columns when divided into groups of rows
subrcModelMedianPolish	Fit row-column model to a matrix
subrcModelPLM	Fit row-column model to a matrix
subrcModelWPLM	Fit row-column model to a matrix