Principal components (cor)relation with experimental covariates
Extract and plot the expression profile of genes
Principal components analysis on the genes
Get an annotation data frame from biomaRt
Get an annotation data frame from org db packages
Functional interpretation of the principal components, based on simple overrepresentation analysis
Make a simulated DESeqDataSet for two or more experimental factors
Pairwise scatter and correlation plot of counts
Functional interpretation of the principal components
pcaExplorer: analyzing time-lapse microscopy imaging, from detection to tracking
Explore a dataset from a PCA perspective
Plot significance of (cor)relations of covariates VS principal components
Extract functional terms enriched in the DE genes, based on topGO