Compute average log-intensities / log-ratios
Methods for class AssayData in the oligoClasses package
List classes with assay data listed by chromosome
Methods for Function GenomeAnnotatedDataFrameFrom in Package oligoClasses
Accessors and methods for SnpSet objects
Available Affymetrix platforms for SNP arrays
Accessor for slot assayDataList in Package 'oligoClasses'
Accessor for batch statistics uses for copy number estimation and storage of model parameters
Extracts complete cel file name from a CNSet object
Checks to see whether an object exists and, if not, executes the appropriate function.
Checks whether a eSet-derived class is ordered by chromosome and physical position
Methods for function chromosome in package oligoClasses
Cluster and large dataset management utilities.
DEPRECATED FUNCTIONS.  Cluster and large dataset management utilities.
Get the connection to the SQLite Database
Accessor for slot 'featureDataList' in Package 'oligoClasses' ~~
Open and close methods for matrices and numeric vectors
Container for objects with genomic annotation on SNPs
Miscellaneous generics.  Methods defined in packages that depend on oligoClasses
Load chromosome sequence lengths for UCSC genome build hg18 or hg19
Functions to convert probabilities to integers, or integers to probabilities.
Coerce numeric matrix (or array) to a matrix (array) of integers, retaining dimnames.
Methods for Function isSnp in package oligoClasses~~
Number of samples for FeatureSet-like objects.
Supress package startup messages when loading a library
Basic data elements required for the HMM
Construct a GRanges object from several possible feature-level classes
Manufacturer ID for FeatureSet-like objects.
lapply-like function that parallelizes code when possible.
An example instance of oligoSnpSet class
Checks if oligo/crlmm can use parallel resources.
Methods for function position in Package oligoClasses
DEPRECATED FUNCTIONS.  Package loaders for clusters.
Sample names for FeatureSet-like objects
Tools to distribute objects across nodes or by length.