BinomialExample Synthetic dataset with binary response Cindex compute C index for a Cox model CoxExample Synthetic dataset with right-censored survival response MultiGaussianExample Synthetic dataset with multiple Gaussian responses MultinomialExample Synthetic dataset with multinomial response PoissonExample Synthetic dataset with count response QuickStartExample Synthetic dataset with Gaussian response SparseExample Synthetic dataset with sparse design matrix assess.glmnet assess performance of a 'glmnet' object using test data. beta_CVX Simulated data for the glmnet vignette bigGlm fit a glm with all the options in 'glmnet' coef.glmnet Extract coefficients from a glmnet object cox.fit Fit a Cox regression model with elastic net regularization for a single value of lambda cox.path Fit a Cox regression model with elastic net regularization for a path of lambda values cox_obj_function Elastic net objective function value for Cox regression model coxgrad Compute gradient for Cox model coxnet.deviance Compute deviance for Cox model cv.glmnet Cross-validation for glmnet dev_function Elastic net deviance value deviance.glmnet Extract the deviance from a glmnet object elnet.fit Solve weighted least squares (WLS) problem for a single lambda value fid Helper function for Cox deviance and gradient get_cox_lambda_max Get lambda max for Cox regression model get_eta Helper function to get etas (linear predictions) get_start Get null deviance, starting mu and lambda max glmnet fit a GLM with lasso or elasticnet regularization glmnet-package Elastic net model paths for some generalized linear models glmnet.control internal glmnet parameters glmnet.fit Fit a GLM with elastic net regularization for a single value of lambda glmnet.measures Display the names of the measures used in CV for different "glmnet" families glmnet.path Fit a GLM with elastic net regularization for a path of lambda values makeX convert a data frame to a data matrix with one-hot encoding mycoxph Helper function to fit coxph model for survfit.coxnet mycoxpred Helper function to amend ... for new data in survfit.coxnet na.replace Replace the missing entries in a matrix columnwise with the entries in a supplied vector obj_function Elastic net objective function value pen_function Elastic net penalty value plot.cv.glmnet plot the cross-validation curve produced by cv.glmnet plot.glmnet plot coefficients from a "glmnet" object predict.cv.glmnet make predictions from a "cv.glmnet" object. predict.glmnetfit Get predictions from a 'glmnetfit' fit object print.cv.glmnet print a cross-validated glmnet object print.glmnet print a glmnet object response.coxnet Make response for coxnet rmult Generate multinomial samples from a probability matrix stratifySurv Add strata to a Surv object survfit.coxnet Compute a survival curve from a coxnet object survfit.cv.glmnet Compute a survival curve from a cv.glmnet object use.cox.path Check if glmnet should call cox.path weighted_mean_sd Helper function to compute weighted mean and standard deviation