# eaf 2.5.1 * Fix Clang warning. # eaf 2.5 * The argument `to.range` of `normalise()` has been renamed to `to_range`. * Silence some warnings with GCC 12. * Replace dots in function names with underscore (`_`) to silence CRAN Note. # eaf 2.4 * If the installation cannot find the Gnu Scientific Library, it gives hints on how to install it on various operating systems. * `pdf_crop()` can optionally embed fonts. * Fix calculation of `ideal` in `largest_eafdiff()`. * Fix `configure` script to use the same compiler and flags as R. # eaf 2.3 * `eafplot()` now returns the attainment surfaces computed invisibly. * New functions `pdf_crop()`, `write_datasets()`, `attsurf2df()`. * Fix bug that made polygons extend beyond their boundaries affecting `eafdiff()` and `eafdiffplot()`. # eaf 2.2 * `col` argument of `eafdiffplot()` may be a colormap function. # eaf 2.1 * Improve documentation of `igd()`. * Fix errors with single-point attainment surfaces. * Fix bug in `eafplot.list()`. # eaf 2.0 * `read_datasets()` is able to read files compressed with `xz`. * `eafs()` and `eafdiff()` and the plotting functions using them now consume slightly less memory. * New function `whv_hype()` to estimate weighted hypervolume using Monte-Carlo sampling. * New functions `total_whv_rect()` and `whv_rect()` to compute weighted hypervolume with rectangular weighted regions. * New functions `largest_eafdiff()`, `choose_eafdiffplot()` and `choose_eafdiff()` for converting EAF differences into weighted regions for calculating the weighted hypervolume. * New function `avg_hausdorff_dist()` for computing the averaged Hausdorff distance. # eaf 1.9-1 * Fixes to Makefiles for non-GCC compilers and parallel build setups. # eaf 1.9 * Compute Vorob'ev threshold, expectation and deviation. Plots of the symmetric deviation. (Mickael Binois) * Non-integer EAF percentiles are computed correctly. * Various aesthetic improvements in `eafplot()` and `eafdiffplot()`. * Functions for computing hypervolume, hypervolume contributions, epsilon metric, IGD+, filter dominated points, and fast normalisation of ranges. * Command-line tools for computing the above are installed in `system.file(package="eaf", "bin/")`. * Online documentation available at: http://lopez-ibanez.eu/eaftools * New `read_datasets()` replaces deprecated `read.data.sets()`. New parameter `text` of `read_datasets()`. * New `eafdiff()` function for computing EAF differences. * The `data.frame` method for `eafplot` has been removed. It had unexpected behavior and the default method handles `data.frame` already. * Python script to compute EAF differences installed at `system.file(package="eaf", "scripts/eafdiff.py")`. # eaf 1.8 * Development version moved to GitHub: https://github.com/MLopez-Ibanez/eaf * Remove leading zeros from version number. * New parameters `left.panel.last` and `right.panel.last` of `eafdiffplot()`. * Export and document function `eafs()` to compute EAFs. * `eafdiff.pl`: Handle `--colors=`, `--intervals=`. * Fix crash in `eafplot()` if `sets` is a vector of strings. * Reset layout in `eafdiffplot()`. * Compute eaf for 3D. * Added testthat testing framework. * The documentation is now generated with Roxygen2. * Entry points to C code are now properly registered. # eaf 1.07 * Silence CRAN warning for GNU extensions in Makefiles in `inst/scripts/eaf/Makefile`. # eaf 1.06 * Fix bug when automatically generating a legend in `eafplot()` with the formula interface (Thanks to Bernd Bischl for reporting this) * Improve handling of various newline character formats. * Reduce memory consumption (up to four times less memory). * `eafdiff.pl`: Mention option `--legendpos=none` to hide the legend. * `eafplot.pl`: Add options `--maximise` and `--xmaximise` and `--colors=`. Fix bug with `--area`. * `eafplot.default()` now requires two colors when `type=="area"` and a palette is interpolated between these two colors for all the different levels plotted (Thanks to Alexandre Quemy for the suggestion). # eaf 1.05 * Implement `type = "area"` for `eafdiffplot()`. This is now the default. The idea for the algorithm to compute the areas was provided by Carlos M. Fonseca. The implementation uses R polygons, which some PDF viewers may have trouble rendering correctly (See https://cran.r-project.org/doc/FAQ/R-FAQ.html#Why-are-there-unwanted-borders). Plots will look correct when printed. To get the previous behavior use `eafdiffplot(, type = "point")`. * Attempt to deal with DOS/Unix newlines correctly. * `eafplot.pl`: Cleanups. (`--single, --output, --legend`): New options. Default to PDF. * `eafdiff.pl`: Many cleanups. EAF diff with `type="area"` is the default now. Parameter `--cex` replaced by `--scale`. Do not require `ps2eps`. Handle `--obj1=` better. Crop pdf before converting to `PNG`. (`--noattsurfs`): New option. (`--output-dir,--output`): New options. (`--eps`): New option. PDF is the default now. * Force `eafdiffplot()` to use a square plotting region. * `read.data.sets()` normalizes paths, thus it works with files such as `~/file`. * Function `eafdiffplot()` handles `percentiles=NA` and grand.lines parameter. * Fix bug with ranges and `maximise=TRUE` in `eafdiffplot()`. * Fix `points.steps` to work correctly for all values of `maximise`. * Fix bug in `eafdiffplot(..., maximise=c(TRUE,FALSE), full.eaf = TRUE)` * Fix `"log"` parameter in `eafplot()` and `eafdiffplot()`. * Avoid that `eafplot.formula` modifies global options. * Add `'axes'` parameter to `eafplot()`. * To avoid confusion, the arguments `'xaxis.side'` and `'yaxis.side'` of `eafplot()` can only take values `c("below", "above")` and `c("left", "right")`, respectively. * Add missing Makefile in `inst/scripts/eaf/`. # eaf 1.04 * Fix issues with only one point in the EAF. # eaf 1.03 * Handle maximise argument in `eafdiffplot()` and `--maximise` command-line option in `eafdiff.pl` * `R/calls.R` (`eafplot.data.frame`): Fix problem with main parameter. # eaf 1.00 * Initial release available in CRAN.