Performs adaptive shrinkage on Poisson data
Credible Interval Computation for the ash object
Compute loglikelihood ratio for data from ash fit
Compute loglikelihood for data from ash fit
Generic function of calculating the overall mean of the mixture
Generic function of calculating the overall standard deviation of the mixture
Compute loglikelihood for data under null that all beta are 0
Compute vector of loglikelihood for data under null that all beta are 0
Compute vector of loglikelihood ratio for data from ash fit
Compute vector of loglikelihood for data from ash fit
Generic function of computing the cdf for each component
cdf of convolution of each component of a unif mixture
Generic function of calculating the component densities of the mixture
density of convolution of each component of a unif mixture
Generic function of calculating the first moment of components of the mixture
Generic function of calculating the second moment of components of the mixture
Generic function to extract the standard deviations of components of the mixture
Function to compute the local false sign rate
Estimate mixture proportions of a mixture g given noisy (error-prone) data from that mixture.
Likelihood object for Binomial error distribution
Likelihood object for logF error distribution
Likelihood object for normal error distribution
Likelihood object for normal mixture error distribution
Likelihood object for Poisson error distribution
Likelihood object for t error distribution
log density of convolution of each component of a unif mixture
Estimate mixture proportions of a mixture model by EM algorithm
Estimate mixture proportions of a mixture model by Interior Point method
Estimate mixture proportions of a mixture model using mix-SQP algorithm.
Estimate posterior distribution on mixture proportions of a mixture model by a Variational Bayes EM algorithm
Generic function of calculating the overall second moment of the mixture
Generic function of extracting the mixture proportions
second moment of truncated Beta distribution
second moment of truncated gamma distribution
Expected Squared Value of Truncated Normal
Generic function to extract which components of mixture are point mass on 0
Function to compute q values from local false discovery rates
Takes raw data and sets up data object for use by ash
Estimate mixture proportions of a mixture model by EM algorithm (weighted version)