Defunct functions in package 'affycoretools'
Make repetitive analyses of microarray and RNA-Seq data simpler with affycoretools.
Pre-processing for Affymetrix Data
Method to annotate ExpressionSets automatically
A function to create an annotated HTML table for all genes in a significant gene set as well as a heatmap of these data.
A function to generate MA-plots from Glimma, for all contrasts.
Add links to data when using ReportingTools
Fix data.frame header for use with ReportingTools
A function to create an HTML page for each gene set, as well as the HTML pages for each significant gene set.
Correct Ordering of Contrasts
Remove control probesets from ST arrays
A function to create a simple heatmap and key.
Create Names for Venn Diagram Intersections
A Function to Make a Classlabel Vector for Plotting
Make Gene table from GO analysis results
Create HTML tables for Gene Ontology (GO) analyses
A function to create a heatmap-like object or matrix of correlations between miRNA and mRNA data.
Add dotplot images
Create Indices for Venn Diagrams
High-level function for making Venn diagrams and outputting the results from the diagrams in HTML and CSV files.
A Function to make MA plots from all arrays.
A function to map miRNA to mRNA.
A function to create HTML output from the results of running romer on a set of contrasts.
A Function to Automagically Place a Legend in a PCA Plot
Functions to Plot Density and RNA Degradation Plots
A Function to Make a PCA Plot from an ExpressionSet or matrix
A function to run the romer function on a set of contrasts.
Filter a topTable object
4-way Venn Diagrams
Compute Counts for Venn Diagram
Generate Venn diagrams with links for Rmarkdown documents
High-level function for making Venn diagrams with clickable links to HTML pages with the underlying genes.
Select and Output Genelists Based on Venn Diagrams
Function to output annotated fit data from limma