Methods for Affymetrix Oligonucleotide Arrays
Rafael A. Irizarry <rafa@ds.harvard.edu>, Laurent Gautier
        <lgautier@gmail.com>, Benjamin Milo Bolstad
        <bmb@bmbolstad.com>, and Crispin Miller
        <cmiller@picr.man.ac.uk> with contributions from Magnus
        Astrand <Magnus.Astrand@astrazeneca.com>, Leslie M. Cope
        <cope@mts.jhu.edu>, Robert Gentleman, Jeff Gentry, Conrad
        Halling <challing@agilixcorp.com>, Wolfgang Huber, James
        MacDonald <jmacdon@u.washington.edu>, Benjamin I. P. Rubinstein,
        Christopher Workman <workman@cbs.dtu.dk>, John Zhang
affyio (>= 1.13.3), BiocManager, graphics, grDevices, methods,
preprocessCore, stats, utils, zlibbioc
tkWidgets (>= 1.19.0), affydata, widgetTools
The package contains functions for exploratory
        oligonucleotide array analysis. The dependence on tkWidgets
        only concerns few convenience functions. 'affy' is fully
        functional without it.
ProgressBarText.R ppset.ttest.R ppsetApply.R expressoWidget.R
getCDFenv.R AffyRNAdeg.R avdiff.R barplot.ProbeSet.R
bg.Affy.chipwide.R bg.R expresso.R fit.li.wong.R
generateExprVal.method.avgdiff.R
generateExprVal.method.liwong.R generateExprVal.method.mas.R
generateExprVal.method.medianpolish.R
generateExprVal.method.playerout.R hlog.R justrma.R
loess.normalize.R maffy.R mas5.R merge.AffyBatch.R
normalize.constant.R normalize.contrasts.R
normalize.invariantset.R normalize.loess.R normalize.qspline.R
normalize.quantiles.R pairs.AffyBatch.R plot.density.R
plotLocation.R plot.ProbeSet.R pmcorrect.mas.R AffyBatch.R
mva.pairs.R ProbeSet.R read.affybatch.R rma.R summary.R
tukey.biweight.R whatcdf.R xy2indices.R zzz.R