Package: EnhancedVolcano
Type: Package
Title: Publication-ready volcano plots with enhanced colouring and
        labeling
Version: 1.16.0
Authors@R: c(
    person("Kevin", "Blighe", role = c("aut", "cre"), email = "kevin@clinicalbioinformatics.co.uk"),
    person("Sharmila", "Rana", role = c("aut")),
    person("Emir", "Turkes", role = c("ctb")),
    person("Benjamin", "Ostendorf", role = c("ctb")),
    person("Andrea", "Grioni", role = c("ctb")),
    person("Myles", "Lewis", role = c("aut")))
Maintainer: Kevin Blighe <kevin@clinicalbioinformatics.co.uk>
Description: Volcano plots represent a useful way to visualise the results of differential expression analyses. Here, we present a highly-configurable function that produces publication-ready volcano plots. EnhancedVolcano will attempt to fit as many point labels in the plot window as possible, thus avoiding 'clogging' up the plot with labels that could not otherwise have been read. Other functionality allows the user to identify up to 4 different types of attributes in the same plot space via colour, shape, size, and shade parameter configurations.
License: GPL-3
Depends: ggplot2, ggrepel
Imports: methods
Suggests: ggalt, ggrastr, RUnit, BiocGenerics, knitr, DESeq2, pasilla,
        airway, org.Hs.eg.db, gridExtra, magrittr, rmarkdown
URL: https://github.com/kevinblighe/EnhancedVolcano
biocViews: RNASeq, GeneExpression, Transcription,
        DifferentialExpression, ImmunoOncology
VignetteBuilder: knitr
RoxygenNote: 7.1.2
git_url: https://git.bioconductor.org/packages/EnhancedVolcano
git_branch: RELEASE_3_16
git_last_commit: cc67675
git_last_commit_date: 2022-11-01
Date/Publication: 2022-11-01
NeedsCompilation: no
Packaged: 2022-11-01 21:27:34 UTC; biocbuild
Author: Kevin Blighe [aut, cre],
  Sharmila Rana [aut],
  Emir Turkes [ctb],
  Benjamin Ostendorf [ctb],
  Andrea Grioni [ctb],
  Myles Lewis [aut]
Built: R 4.2.3; ; 2024-03-22 20:33:30 UTC; unix