Helper function for constructing a GOHyperGParams objects or KEGGHyperGParams objects from a GeneSetCollection
Apply a function to a vector of statistics, by category
Construct a category membership matrix from a list of gene identifiers and their annotated GO categories.
Return a list mapping category ids to Entrez Gene ids
Create and Test Contingency Tables of Chromosome Band Annotations
Parse Homo Sapiens Chromosome Band Annotations
Parse Mus Musculus Chromosome Band Annotations
Chromosome Band Tree-Based Hypothesis Testing
Display a sample node from each level of a ChrBandTree object
A function to print pathway names given their numeric ID.
Hypergeometric Test for association of categories and genes
Hypergeometric (gene set enrichment) tests on character vectors.
A linear model-based test to detect enrichment of unusual genes in categories
Local and Global Test Function Factories
Create a graph representing chromosome band annotation data
A function to make the contrast vectors needed for EBarrays
Non-standard Generic for Checking Validity of Parameter Objects
A function to map probe identifiers to pathways.
A simple function to compute a permutation t-test.
Return a vector of gene identifiers with category annotations