\name{@ANNOBJPREFIX@SCOP}
\alias{@ANNOBJPREFIX@SCOP}
\title{Mappings from a PFAM Accession number to a SCOP ID}
\description{
  This is an R object that always contains mappings from a PFAM
  accession (AC) to a SCOP ID
}
\details{
  The SCOP ID along with the start point and end point have been attached
  to the PFAM accessions in this object.

  More Details: Structural Classification of Proteins
  (\url{http://scop.mrc-lmb.cam.ac.uk/scop/index.html}).  Reference:
  Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). SCOP: a
  structural classification of proteins database for the investigation
  of sequences and structures. J. Mol. Biol. 247, 536-540  
}
\references{\url{http://www.sanger.ac.uk/Software/Pfam/} and
  \url{ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt}
}

\seealso{
  \itemize{
    \item \code{\link[AnnotationDbi]{AnnotationDb-class}} for use of
          the \code{select()} interface.
  }
}

\examples{
## select() interface:
## Objects in this package can be accessed using the select() interface
## from the AnnotationDbi package. See ?select for details.

## Bimap interface:
#To map from PFAM to SCOP:
x <- @ANNOBJPREFIX@SCOP
# Get the PFAM identifiers that are mapped to a SCOP
mapped_keys <- mappedkeys(x)
# Convert to a list
xx <- as.list(x[mapped_keys])
if(length(xx) > 0) {
  # Get the SCOP info for the first five PFAM IDs
  xx[1:5]
  # Get the first one
  xx[[1]]
}
}

\keyword{datasets}