\name{@ANNOBJPREFIX@UNIGENE} \alias{@ANNOBJPREFIX@UNIGENE} \alias{@ANNOBJPREFIX@UNIGENE2EG} \title{Map between Entrez Gene Identifiers and UniGene cluster identifiers} \description{ @ANNOBJPREFIX@UNIGENE is an R object that provides mappings between entrez gene identifiers and UniGene identifiers. } \details{ Each entrez gene identifier is mapped to a UniGene identifier. An \code{NA} is reported if the entrez gene identifier cannot be mapped to UniGene at this time. A UniGene identifier represents a cluster of sequences of a gene. Using UniGene identifiers one can query the UniGene database for information about the sequences. Mappings were based on data provided by: @UNIGENESOURCE@ } \references{ \url{https://www.ncib.nlm.nih.gov/entrez/query.fcgi?db=gene} } \seealso{ \itemize{ \item \code{\link[AnnotationDbi]{AnnotationDb-class}} for use of the \code{select()} interface. } } \examples{ ## select() interface: ## Objects in this package can be accessed using the select() interface ## from the AnnotationDbi package. See ?select for details. ## Bimap interface: x <- @ANNOBJPREFIX@UNIGENE # Get the Unigene identifiers that are mapped to an entrez gene id mapped_genes <- mappedkeys(x) # Convert to a list xx <- as.list(x[mapped_genes]) if(length(xx) > 0) { # Get the UNIGENE for the first five genes xx[1:5] # Get the first one xx[[1]] } # For the reverse map: x <- @ANNOBJPREFIX@UNIGENE2EG # Get the entrez gene identifiers that are mapped to a Unigene id mapped_genes <- mappedkeys(x) # Convert to a list xx <- as.list(x[mapped_genes]) if(length(xx) > 0) { # Get the entrez gene for the first five genes xx[1:5] # Get the first one xx[[1]] } } \keyword{datasets}