FastQCFastQC Report
Mon 4 Mar 2024
79_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename79_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18994723
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1367740.7200631459590119No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA503340.26498938678916245No Hit
GGAAAATTCGCTTTGGCACTCATCCTCTGCCTCCAGGTCTCCCTGAGCCT346830.18259281801582472No Hit
TGTCACTTCTTGGTTCTGCACGTCTAACTCACCAGCAGAGATGAACGGAA298360.15707520451864448No Hit
CTGTATGCCAGCATAGGCAGTGACCAGCGGCGCTTAGTGAAAACACACAC249430.13131541849807443No Hit
CCCACACATACACACACACACACACACACACACACACACACACACACACA205010.10792997613073906No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)