FastQCFastQC Report
Mon 4 Mar 2024
50_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename50_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18940766
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1280240.6759177532735476No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA265280.14005769354840242No Hit
GGAAAATTCGCTTTGGCACTCATCCTCTGCCTCCAGGTCTCCCTGAGCCT195140.1030264562689809No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)