FastQCFastQC Report
Mon 4 Mar 2024
4_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename4_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20853504
Total Bases3.1 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGTGATGAATCTGGGGG873650.4189463794669711TruSeq Adapter, Index 9 (97% over 36bp)
GAAATATTCATATCTTTATTGAGCTGTATTTGATGTACAGTTTTCTTCAT289930.1390317905326606No Hit
GTCGTATGCAAGTGGTTTAACACCCAGTCCTTCATAAACATGTGGTGTGA209800.10060659350102506No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)