FastQCFastQC Report
Mon 4 Mar 2024
3_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename3_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20708580
Total Bases3.1 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2099861.0140048231216239No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA643710.31084217266466363No Hit
CCCACACATACACACACACACACACACACACACACACACACACACACACA311480.1504110856466257No Hit
GGAAAATTCGCTTTGGCACTCATCCTCTGCCTCCAGGTCTCCCTGAGCCT208490.100678076430156No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)