FastQCFastQC Report
Mon 4 Mar 2024
109_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename109_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22210202
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4736622.1326325622792623No Hit
GGAAAATTCGCTTTGGCACTCATCCTCTGCCTCCAGGTCTCCCTGAGCCT371240.16714841224766888No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA355890.1602371738897287No Hit
TGTCACTTCTTGGTTCTGCACGTCTAACTCACCAGCAGAGATGAACGGAA311820.1403949410275512No Hit
CTGTATGCCAGCATAGGCAGTGACCAGCGGCGCTTAGTGAAAACACACAC255980.11525334168505086No Hit
CCCACACATACACACACACACACACACACACACACACACACACACACACA232810.10482119883466166No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)