Index of /gitrepos/urol-e5/timeseries_molecular/M-multi-species/scripts

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory   -  
[TXT]01-0040029-geneID.Rmd 2025-09-15 16:35 1.4K 
[ ]02-phys-PC1.Rmd 2025-09-15 16:35 6.2K 
[ ]03-test-lipidomics.Rmd 2025-09-15 16:35 44K 
[TXT]04-test-metabolomics..>2025-09-15 16:35 7.9K 
[ ]05-test-lipidomics-2..>2025-09-15 16:35 44K 
[ ]08-link_metab_lipid_..>2025-09-15 16:35 46K 
[TXT]09-metabolomics-WGCN..>2025-10-02 15:35 15K 
[TXT]10-format-miRNA-coun..>2025-10-02 15:35 2.0K 
[ ]11-filter_count_matr..>2025-10-02 15:35 3.4K 
[ ]11-orthology-analysi..>2025-10-02 15:35 15K 
[TXT]11.1-orthology.md 2025-10-02 15:35 6.4K 
[TXT]11.3-ortholog-annota..>2025-10-02 15:35 8.3K 
[TXT]11.3-ortholog-annota..>2025-10-02 15:35 17K 
[TXT]11.3-ortholog-annota..>2025-10-02 15:35 24K 
[TXT]11.3-ortholog-annota..>2025-10-02 15:35 22K 
[ ]12-ortho-annot.sh 2025-10-02 15:35 19K 
[ ]comprehensive_orthol..>2025-10-02 15:35 11K 
[TXT]identify_orthologs.py 2025-10-02 15:35 4.3K 
[ ]run_full_orthology.sh 2025-10-02 15:35 8.6K 
[ ]run_ortholog_annotat..>2025-10-02 15:35 9.0K 
[ ]06-lipidomics-analys..>2025-10-02 15:36 127K 
[TXT]07-metabolomics-anal..>2025-10-02 15:36 35K 
[ ]BACKUP-NOV6.md 2025-11-14 09:46 12K 
[TXT]10.1-format-miRNA-co..>2025-11-18 15:21 2.1K 
[TXT]13-ortho-select.html 2025-11-18 15:21 20K 
[ ]13-ortho-select.md 2025-11-18 15:21 24K 
[ ]13-ortho-select.qmd 2025-11-18 15:21 2.7K 
[DIR]13-ortho-select_files/ 2025-11-18 15:21 -  
[ ]13.00-multiomics-bar..>2025-11-18 15:21 97K 
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[TXT]13.00-multiomics-std..>2025-11-18 15:21 13K 
[ ]13.00-multiomics-std..>2025-11-18 15:21 377K 
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[DIR]13.00-multiomics-std..>2025-11-18 15:21 -  
[TXT]14-pca-plsda-ortholo..>2025-11-18 15:21 12K 
[ ]19-CG-motifs.Rmd 2025-11-18 15:21 4.3K 
[ ]19-CG-motifs.md 2025-11-18 15:21 3.5K 
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[ ]normalize_ortholog_e..>2025-11-18 15:21 6.5K 
[ ]references.bib 2025-11-18 15:21 405  
[ ]31-rank35-optimizati..>2025-11-24 14:34 3.7K 
[DIR]14-barnacle/ 2025-12-03 16:53 -  
[DIR]14.1-barnacle/ 2025-12-03 16:53 -  
[TXT]18-ortholog-wgcna.Rmd 2025-12-03 16:53 96K 
[TXT]19-annotate-wgcna-mo..>2025-12-03 16:53 4.5K 
[ ]19-annotate-wgcna-mo..>2025-12-03 16:53 13K 
[DIR]20-new-sparse-tensor..>2025-12-03 16:53 -  
[ ]21-barnacle-rank-tes..>2025-12-03 16:53 732  
[ ]22-Visualizing-Rank-..>2025-12-03 16:53 10K 
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[TXT]22-barnacle-rank-tes..>2025-12-03 16:53 777  
[TXT]23-annotate-rank-lis..>2025-12-03 16:53 3.3K 
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[DIR]23-visualizing-rank35/ 2025-12-03 16:53 -  
[DIR]24-visualizing-rank05/ 2025-12-03 16:53 -  
[TXT]25-hmmer.Rmd 2025-12-03 16:53 964  
[ ]26-rank35-optimizati..>2025-12-03 16:53 13K 
[DIR]26.1-rank35-optimiza..>2025-12-03 16:53 -  
[TXT]26.2-rank35-optimiza..>2025-12-03 16:53 84K 
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[TXT]26.3-rank35-optimiza..>2025-12-03 16:53 92K 
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[TXT]27-annotate-componen..>2025-12-03 16:53 3.6K 
[TXT]27-annotate-componen..>2025-12-03 16:53 7.1K 
[ ]27-rank35-optimizati..>2025-12-03 16:53 663  
[ ]28-rank35-lg02.rmd 2025-12-03 16:53 12K 
[TXT]28-summarize-goslim-..>2025-12-03 16:53 2.0K 
[TXT]28-summarize-goslim-..>2025-12-03 16:53 4.9K 
[TXT]29-filter-component-..>2025-12-03 16:53 6.6K 
[ ]30-compare-multiway-..>2025-12-03 16:53 12K 
[ ]31-biomin-pathway.rmd 2025-12-03 16:53 19K 
[TXT]31.1-biomin-blast.Rmd 2025-12-03 16:53 4.9K 
[ ]32-module_contributi..>2025-12-03 16:53 10K 
[ ]33-orthofinder_E5.Rmd 2025-12-03 16:53 702  
[TXT]33-orthofinder_E5.md 2025-12-03 16:53 1.6K 
[TXT]convert_annotation_s..>2025-12-03 16:53 1.9K 
[TXT]test_goslim_summary.py 2025-12-03 16:53 5.8K 
[TXT]test_wgcna_annotatio..>2025-12-03 16:53 6.8K 
[TXT]32-gene-loading-hist..>2025-12-03 16:56 6.6K 
[ ]40-rank35-optimizati..>2025-12-03 16:56 715  
[ ]50-build_tensor_alte..>2025-12-03 16:56 11K 
[ ]51-optimal-rank.py 2025-12-03 16:56 12K 
[TXT]BOOTSTRAP_INCREMENTA..>2025-12-05 11:15 9.5K 
[TXT]BARNACLE_1SE_RULE.md 2025-12-08 14:45 9.7K 
[TXT]26.1-rank35-optimiza..>2026-01-09 08:53 80K 
[ ]26.1-rank35-optimiza..>2026-01-09 08:53 389K 
[ ]26.2-ElasticNet-scal..>2026-01-09 08:53 30K 
[TXT]26.4-ElasticNet-perm..>2026-01-09 08:53 61K 
[TXT]33-rank35-comp05.Rmd 2026-01-09 08:53 17K 
[ ]41-rank35-optimizati..>2026-01-09 08:53 688  
[ ]53-barnacle-interp-g..>2026-01-09 08:53 11K 
[TXT]53-barnacle-interp-i..>2026-01-09 08:53 1.6K 
[ ]53-barnacle-interp.py 2026-01-09 08:53 62K 
[TXT]26.5-ElasticNet-perm..>2026-02-17 08:27 61K 
[TXT]13.00-multiomics-bar..>2026-02-17 08:27 118K 
[TXT]26.6-ElasticNet-stab..>2026-03-10 13:48 83K