Index of /gitrepos/urol-e5/timeseries_molecular/M-multi-species/scripts

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory   -  
[TXT]01-0040029-geneID.Rmd 2024-10-07 09:03 1.4K 
[ ]02-phys-PC1.Rmd 2024-10-07 09:03 6.2K 
[ ]03-test-lipidomics.Rmd 2024-10-15 06:42 44K 
[TXT]04-test-metabolomics..>2024-12-31 11:26 7.9K 
[ ]05-test-lipidomics-2..>2025-02-19 08:26 44K 
[ ]06-lipidomics-analys..>2025-12-28 15:40 127K 
[TXT]07-metabolomics-anal..>2025-12-28 15:40 35K 
[ ]08-link_metab_lipid_..>2025-07-14 13:40 46K 
[TXT]09-metabolomics-WGCN..>2025-12-28 15:40 15K 
[TXT]10-format-miRNA-coun..>2025-12-28 15:40 2.0K 
[TXT]10.1-format-miRNA-co..>2025-12-28 15:42 2.1K 
[ ]11-filter_count_matr..>2025-12-28 15:40 3.4K 
[ ]11-orthology-analysi..>2025-12-28 15:40 15K 
[TXT]11.1-orthology.md 2025-12-28 15:40 6.4K 
[TXT]11.3-ortholog-annota..>2025-12-28 15:40 8.3K 
[TXT]11.3-ortholog-annota..>2025-12-28 15:40 17K 
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[ ]12-ortho-annot.sh 2025-12-28 15:40 19K 
[TXT]13-ortho-select.html 2025-12-28 15:42 20K 
[ ]13-ortho-select.md 2025-12-28 15:42 24K 
[ ]13-ortho-select.qmd 2025-12-28 15:42 2.7K 
[DIR]13-ortho-select_files/ 2025-12-28 15:42 -  
[TXT]13.00-multiomics-bar..>2026-02-17 08:33 118K 
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[TXT]13.00-multiomics-std..>2025-12-28 15:42 13K 
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[DIR]13.00-multiomics-std..>2025-12-28 15:42 -  
[DIR]14-barnacle/ 2025-12-28 15:42 -  
[TXT]14-pca-plsda-ortholo..>2025-12-28 15:42 12K 
[DIR]14.1-barnacle/ 2025-12-28 15:42 -  
[TXT]18-ortholog-wgcna.Rmd 2025-12-28 15:42 96K 
[ ]19-CG-motifs.Rmd 2025-12-28 15:42 4.3K 
[ ]19-CG-motifs.md 2025-12-28 15:42 3.5K 
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[TXT]19-annotate-wgcna-mo..>2025-12-28 15:42 4.5K 
[ ]19-annotate-wgcna-mo..>2025-12-28 15:42 13K 
[DIR]20-new-sparse-tensor..>2025-12-28 15:42 -  
[ ]21-barnacle-rank-tes..>2025-12-28 15:42 732  
[ ]22-Visualizing-Rank-..>2025-12-28 15:42 10K 
[TXT]22-Visualizing-Rank-..>2025-12-28 15:42 17M 
[TXT]22-barnacle-rank-tes..>2025-12-28 15:42 777  
[TXT]23-annotate-rank-lis..>2025-12-28 15:42 3.3K 
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[DIR]23-visualizing-rank35/ 2025-12-28 15:42 -  
[DIR]24-visualizing-rank05/ 2025-12-28 15:42 -  
[TXT]25-hmmer.Rmd 2025-12-28 15:42 964  
[ ]26-rank35-optimizati..>2025-12-28 15:42 13K 
[TXT]26.1-rank35-optimiza..>2025-12-28 17:57 80K 
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[TXT]26.3-rank35-optimiza..>2025-12-28 15:42 92K 
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[TXT]26.4-ElasticNet-perm..>2025-12-28 17:57 61K 
[TXT]26.5-ElasticNet-perm..>2026-02-17 08:33 61K 
[TXT]27-annotate-componen..>2025-12-28 15:42 3.6K 
[TXT]27-annotate-componen..>2025-12-28 15:42 7.1K 
[ ]27-rank35-optimizati..>2025-12-28 15:42 663  
[ ]28-rank35-lg02.rmd 2025-12-28 15:42 12K 
[TXT]28-summarize-goslim-..>2025-12-28 15:42 2.0K 
[TXT]28-summarize-goslim-..>2025-12-28 15:42 4.9K 
[TXT]29-filter-component-..>2025-12-28 15:42 6.6K 
[ ]30-compare-multiway-..>2025-12-28 15:42 12K 
[ ]31-biomin-pathway.rmd 2025-12-28 15:42 19K 
[ ]31-rank35-optimizati..>2025-11-24 14:34 3.7K 
[TXT]31.1-biomin-blast.Rmd 2025-12-28 15:42 4.9K 
[TXT]32-gene-loading-hist..>2025-12-28 15:42 6.6K 
[ ]32-module_contributi..>2025-12-28 15:42 10K 
[ ]33-orthofinder_E5.Rmd 2025-12-28 15:42 702  
[TXT]33-orthofinder_E5.md 2025-12-28 15:42 1.6K 
[TXT]33-rank35-comp05.Rmd 2025-12-28 15:42 17K 
[ ]40-rank35-optimizati..>2025-12-28 15:42 715  
[ ]41-rank35-optimizati..>2025-12-28 15:42 688  
[ ]50-build_tensor_alte..>2025-12-28 15:42 11K 
[ ]51-optimal-rank.py 2025-12-28 15:42 12K 
[ ]53-barnacle-interp-g..>2025-12-28 15:42 11K 
[TXT]53-barnacle-interp-i..>2025-12-28 15:42 1.6K 
[ ]53-barnacle-interp.py 2025-12-28 17:57 62K 
[ ]BACKUP-NOV6.md 2025-11-14 09:46 12K 
[ ]comprehensive_orthol..>2025-12-28 15:40 11K 
[TXT]convert_annotation_s..>2025-12-28 15:42 1.9K 
[TXT]identify_orthologs.py 2025-12-28 15:40 4.3K 
[ ]normalize_ortholog_e..>2025-12-28 15:42 6.5K 
[ ]references.bib 2025-12-28 15:42 405  
[ ]run_full_orthology.sh 2025-12-28 15:40 8.6K 
[ ]run_ortholog_annotat..>2025-12-28 15:40 9.0K 
[TXT]test_goslim_summary.py 2025-12-28 15:42 5.8K 
[TXT]test_wgcna_annotatio..>2025-12-28 15:42 6.8K