GFF Feature Type Matrix Generated on: Mon Oct 6 03:46:04 UTC 2025 ======================================== This matrix shows the count of each feature type across all GFF files. Feature Type Counts Across All GFF Files ========================================= Feature Type | Apulchra-gen | Results.gff3 | known_miRNAs | Apul.GFFanno | Apul.GFFanno | Apul.GFFanno | Apul.GFFanno | Apul_GFFanno | Apulcra-geno | Apulcra-geno | Apul-RNAhybr | Apul-RNAhybr | Apul-RNAhybr | Apulcra-geno | Apulcra-geno | CDS.gff | CGoutput-10s | exon.gff | gene.gff | tRNA.gff | Porites_ever | Porites_ever | Peve_gene_on | Results.gff3 | known_miRNAs | Pocillopora_ | Pocillopora_ | Pmea_gene_on | Results.gff3 | known_miRNAs ---------------------------------------- | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ | ------------ 3prime_UTR | 0 | 0 | 0 | 36447 | 37359 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 CDS | 201613 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 201613 | 0 | 0 | 0 | 0 | 0 | 0 | 201613 | 0 | 0 | 0 | 0 | 231320 | 231320 | 0 | 0 | 0 | 208535 | 208535 | 0 | 0 | 0 MIRNA_hairpin | 0 | 51 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 48 | 0 | 0 | 0 | 0 | 40 | 0 UTR | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 15098 | 15098 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 Unknown_sRNA_locus | 0 | 18768 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 15578 | 0 | 0 | 0 | 0 | 7126 | 0 exon | 209537 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 209537 | 0 | 0 | 0 | 246418 | 0 | 0 | 0 | 208535 | 208535 | 0 | 0 | 0 five_prime_UTR | 0 | 0 | 0 | 0 | 0 | 36447 | 37158 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 gene | 44371 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 44371 | 0 | 0 | 40389 | 40389 | 0 | 0 | 31840 | 0 | 31840 | 0 | 0 mRNA | 36447 | 0 | 0 | 0 | 0 | 0 | 0 | 36447 | 0 | 36447 | 0 | 0 | 0 | 232746 | 232746 | 0 | 0 | 0 | 0 | 0 | 40389 | 40389 | 0 | 0 | 0 | 31840 | 0 | 0 | 0 | 0 mature_miRNA | 0 | 51 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 48 | 0 | 0 | 0 | 0 | 40 | 0 miRNA-star | 0 | 51 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 48 | 0 | 0 | 0 | 0 | 40 | 0 miRNA_binding | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1041 | 1191 | 6559 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 nucleotide_motif | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 195480 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 sRNA | 0 | 0 | 1613 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2562 | 0 | 0 | 0 | 0 | 1856 siRNA21_locus | 0 | 8 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 16 | 0 | 0 | 0 | 0 | 13 | 0 siRNA22_locus | 0 | 21 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 18 | 0 | 0 | 0 | 0 | 16 | 0 siRNA23_locus | 0 | 25 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 25 | 0 | 0 | 0 | 0 | 19 | 0 siRNA24_locus | 0 | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 18 | 0 | 0 | 0 | 0 | 7 | 0 tRNA | 7924 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7924 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 transcript | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 31840 | 0 | 0 | 0 ======================================== Feature Type Summary: -------------------- 3prime_UTR : present in 2 files, total count: 73806 CDS : present in 7 files, total count: 1484549 MIRNA_hairpin : present in 3 files, total count: 139 UTR : present in 2 files, total count: 30196 Unknown_sRNA_locus : present in 3 files, total count: 41472 exon : present in 5 files, total count: 1082562 five_prime_UTR : present in 2 files, total count: 73605 gene : present in 6 files, total count: 233200 mRNA : present in 8 files, total count: 687451 mature_miRNA : present in 3 files, total count: 139 miRNA-star : present in 3 files, total count: 139 miRNA_binding : present in 3 files, total count: 8791 nucleotide_motif : present in 1 files, total count: 195480 sRNA : present in 3 files, total count: 6031 siRNA21_locus : present in 3 files, total count: 37 siRNA22_locus : present in 3 files, total count: 55 siRNA23_locus : present in 3 files, total count: 69 siRNA24_locus : present in 3 files, total count: 37 tRNA : present in 2 files, total count: 15848 transcript : present in 1 files, total count: 31840