Index of /gitrepos/urol-e5/timeseries_molecular/F-Ptua/output/00.30-F-Ptua-transcriptome-assembly-Trinity/PASA

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[PARENTDIR]Parent Directory   -  
[DIR]__all_transcripts.fa..>2026-01-15 07:03 -  
[DIR]__all_transcripts.fa..>2026-01-15 06:01 -  
[DIR]__all_transcripts.fa..>2026-01-15 06:53 -  
[DIR]__pasa_ptua_pasa_mys..>2026-02-28 09:29 -  
[DIR]pasa_run.log.dir/ 2026-02-21 12:39 -  
[DIR]pblat_outdir/ 2026-01-10 20:04 -  
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[TXT]tmp-1916535-58294-ou..>2026-01-10 17:12 0  
[TXT]tmp-1916535-58294-ou..>2026-01-10 17:12 0  
[TXT]transcripts.fasta.cl..>2026-01-10 20:33 0  
[ ]ptua-PASA.bed.md5 2026-03-18 16:48 48  
[ ]ptua-PASA.gff3.md5 2026-03-18 16:48 49  
[ ]ptua-proteins-PASA.f..>2026-03-18 16:48 59  
[ ]ptua_pasa.gene_struc..>2026-03-13 15:13 90  
[ ]ptua_pasa.gene_struc..>2026-03-18 16:48 90  
[ ]ptua_pasa.gene_struc..>2026-03-13 15:13 91  
[ ]ptua_pasa.gene_struc..>2026-03-18 16:48 91  
[TXT]conf.txt 2026-01-30 12:17 263  
[ ]pipeliner.2076784.cmds 2026-01-15 05:34 295  
[ ]11.ooc 2026-01-10 17:12 412  
[ ]alignAssembly.config 2026-01-10 13:46 504  
[ ]annotCompare.config 2026-02-21 09:58 504  
[ ]__pasa_ptua_pasa_mys..>2026-02-28 09:28 867  
[TXT]seqcl_transcripts.fa..>2026-01-10 13:38 1.1K 
[TXT]err_seqcl_transcript..>2026-01-10 13:38 1.3K 
[ ]pipeliner.2082367.cmds 2026-01-15 06:53 2.9K 
[ ]pipeliner.2076887.cmds 2026-01-15 07:00 3.0K 
[ ]alt_splicing_analysi..>2026-02-21 06:17 10K 
[TXT]cdna_alignment_mysql..>2026-01-10 13:43 16K 
[ ]outparts_cln.sort 2026-01-10 13:38 75K 
[ ]ptua_pasa.polyAsites..>2026-01-17 08:29 206K 
[ ]transcripts.fasta.cl..>2026-01-10 20:33 396K 
[ ]ptua-proteins-PASA.f..>2026-03-18 16:48 5.2M 
[ ]__all_transcripts.fa..>2026-01-15 07:03 7.3M 
[ ]ptua_pasa.gene_struc..>2026-02-15 22:31 12M 
[ ]ptua-PASA.bed 2026-03-18 16:48 13M 
[ ]ptua_pasa.gene_struc..>2026-02-28 09:29 13M 
[ ]ptua_pasa.correlated..>2026-02-21 07:08 16M 
[ ]ptua_pasa.alt_splice..>2026-02-21 07:07 18M 
[ ]ptua-proteins-PASA.f..>2026-03-18 16:48 26M 
[ ]tdn.accs 2026-01-10 13:33 30M 
[TXT]ptua_pasa.alt_splici..>2026-02-21 07:25 32M 
[ ]ptua_pasa.pasa_assem..>2026-01-26 18:08 49M 
[ ]transcripts.fasta.cl..>2026-01-10 13:50 76M 
[ ]__all_transcripts.fa..>2026-01-15 06:56 90M 
[ ]transcripts.fasta.cidx 2026-01-10 13:36 94M 
[ ]__all_transcripts.fa..>2026-01-15 23:05 96M 
[ ]transcripts.fasta.cln 2026-01-10 13:38 106M 
[ ]ptua_pasa.valid_blat..>2026-01-17 00:25 122M 
[ ]ptua_pasa.valid_gmap..>2026-01-17 06:31 127M 
[ ]ptua_pasa.valid_mini..>2026-01-17 07:22 130M 
[TXT]ptua_pasa.pasa_assem..>2026-01-26 18:28 164M 
[ ]ptua_pasa.pasa_assem..>2026-01-26 18:05 168M 
[ ]ptua_pasa.gene_struc..>2026-02-21 10:00 170M 
[ ]ptua_pasa.gene_struc..>2026-02-15 22:31 172M 
[ ]ptua-PASA.gff3 2026-03-18 16:48 188M 
[ ]ptua_pasa.gene_struc..>2026-02-28 09:28 188M 
[ ]ptua_pasa.valid_blat..>2026-01-16 23:30 211M 
[ ]ptua_pasa.valid_gmap..>2026-01-17 06:25 234M 
[ ]ptua_pasa.valid_mini..>2026-01-17 07:13 242M 
[ ]__all_transcripts.fa..>2026-01-15 07:00 247M 
[ ]ptua_pasa.pasa_assem..>2026-01-26 18:15 251M 
[TXT]ptua_pasa.alt_splici..>2026-02-21 07:34 259M 
[ ]ptua_pasa.failed_min..>2026-01-17 07:50 263M 
[ ]ptua_pasa.failed_gma..>2026-01-17 06:51 269M 
[ ]ptua_pasa.failed_bla..>2026-01-17 02:58 283M 
[ ]transcripts.fasta.cl..>2026-01-10 20:33 340M 
[ ]__all_transcripts.fa..>2026-01-15 06:56 407M 
[ ]pasapipeline.v2.5.3...>2026-01-10 13:34 472M 
[ ]ptua_pasa.failed_min..>2026-01-17 08:03 479M 
[ ]ptua_pasa.valid_blat..>2026-01-17 01:57 487M 
[ ]ptua_pasa.failed_gma..>2026-01-17 07:02 503M 
[ ]ptua_pasa.failed_bla..>2026-01-17 04:49 514M 
[ ]blat.spliced_alignme..>2026-01-10 20:04 520M 
[ ]ptua_pasa.valid_gmap..>2026-01-17 06:46 530M 
[ ]ptua_pasa.valid_mini..>2026-01-17 07:42 543M 
[ ]ptua_pasa.assemblies..>2026-01-25 19:20 556M 
[ ]__all_transcripts.fa..>2026-01-15 07:03 579M 
[ ]minimap2.spliced_ali..>2026-01-10 20:33 649M 
[ ]ptua_pasa.indiv_spli..>2026-02-21 07:07 656M 
[ ]gmap.spliced_alignme..>2026-01-10 17:12 863M 
[ ]ptua_pasa.pasa_align..>2026-01-24 12:20 1.0G 
[TXT]alignment.validation..>2026-01-16 11:27 1.0G 
[ ]transcripts.fasta 2026-01-10 13:32 1.5G 
[ ]transcripts.fasta.clean2026-01-10 13:38 1.5G 
[ ]__all_transcripts.fasta2026-01-15 05:34 1.5G 
[ ]ptua_pasa_backup.sql 2026-03-11 15:03 9.5G