Index of /gitrepos/urol-e5/timeseries_molecular/E-Peve/output/12-Peve-lncRNA-discovery

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[TXT]CPC2.txt 2025-10-02 15:35 3.1M 
[   ]POR-69-TP1.bam 2025-08-15 08:41 3.0G 
[   ]POR-69-TP1.gtf 2025-08-15 10:36 41M 
[   ]POR-69-TP1.sorted.bam 2025-08-27 08:56 1.8G 
[   ]POR-69-TP1.sorted.ba..>2025-08-15 08:43 1.1M 
[   ]POR-69-TP2.bam 2025-08-15 08:45 2.7G 
[   ]POR-69-TP2.gtf 2025-08-15 11:29 42M 
[   ]POR-69-TP2.sorted.bam 2025-08-15 08:46 1.6G 
[   ]POR-69-TP2.sorted.ba..>2025-08-15 08:47 1.1M 
[   ]POR-69-TP3.bam 2025-08-15 08:49 2.8G 
[   ]POR-69-TP3.gtf 2025-08-15 10:52 35M 
[   ]POR-69-TP3.sorted.bam 2025-08-15 08:50 1.7G 
[   ]POR-69-TP3.sorted.ba..>2025-08-15 08:51 1.1M 
[   ]POR-69-TP4.bam 2025-08-15 08:53 2.3G 
[   ]POR-69-TP4.gtf 2025-08-15 10:42 32M 
[   ]POR-69-TP4.sorted.bam 2025-08-15 08:54 1.4G 
[   ]POR-69-TP4.sorted.ba..>2025-08-15 08:54 1.1M 
[   ]POR-72-TP1.bam 2025-08-15 08:56 2.2G 
[   ]POR-72-TP1.gtf 2025-08-15 11:48 42M 
[   ]POR-72-TP1.sorted.bam 2025-08-15 08:57 1.3G 
[   ]POR-72-TP1.sorted.ba..>2025-08-15 08:57 1.1M 
[   ]POR-72-TP2.bam 2025-08-15 08:59 2.3G 
[   ]POR-72-TP2.gtf 2025-08-15 10:26 39M 
[   ]POR-72-TP2.sorted.bam 2025-08-15 09:00 1.5G 
[   ]POR-72-TP2.sorted.ba..>2025-08-15 09:00 1.1M 
[   ]POR-72-TP3.bam 2025-08-15 09:02 2.8G 
[   ]POR-72-TP3.gtf 2025-08-15 10:59 40M 
[   ]POR-72-TP3.sorted.bam 2025-08-15 09:03 1.6G 
[   ]POR-72-TP3.sorted.ba..>2025-08-15 09:04 1.1M 
[   ]POR-72-TP4.bam 2025-08-15 09:06 3.2G 
[   ]POR-72-TP4.gtf 2025-08-15 11:42 48M 
[   ]POR-72-TP4.sorted.bam 2025-08-15 09:08 1.9G 
[   ]POR-72-TP4.sorted.ba..>2025-08-15 09:08 1.2M 
[   ]POR-73-TP1.bam 2025-08-15 09:10 2.7G 
[   ]POR-73-TP1.gtf 2025-08-15 11:53 34M 
[   ]POR-73-TP1.sorted.bam 2025-08-15 09:11 1.6G 
[   ]POR-73-TP1.sorted.ba..>2025-08-15 09:12 1.1M 
[   ]POR-73-TP2.bam 2025-08-15 09:14 2.9G 
[   ]POR-73-TP2.gtf 2025-08-15 11:58 30M 
[   ]POR-73-TP2.sorted.bam 2025-08-15 09:16 1.8G 
[   ]POR-73-TP2.sorted.ba..>2025-08-15 09:16 1.1M 
[   ]POR-73-TP3.bam 2025-08-15 09:18 2.5G 
[   ]POR-73-TP3.gtf 2025-08-15 11:37 27M 
[   ]POR-73-TP3.sorted.bam 2025-08-15 09:19 1.6G 
[   ]POR-73-TP3.sorted.ba..>2025-08-15 09:20 1.1M 
[   ]POR-73-TP4.bam 2025-08-15 09:22 2.4G 
[   ]POR-73-TP4.gtf 2025-08-15 10:49 34M 
[   ]POR-73-TP4.sorted.bam 2025-08-15 09:23 1.5G 
[   ]POR-73-TP4.sorted.ba..>2025-08-15 09:23 1.1M 
[   ]POR-74-TP1.bam 2025-08-15 09:25 2.5G 
[   ]POR-74-TP1.gtf 2025-08-15 10:55 43M 
[   ]POR-74-TP1.sorted.bam 2025-08-15 09:26 1.5G 
[   ]POR-74-TP1.sorted.ba..>2025-08-15 09:26 1.1M 
[   ]POR-74-TP2.bam 2025-08-15 09:28 2.3G 
[   ]POR-74-TP2.gtf 2025-08-15 11:02 34M 
[   ]POR-74-TP2.sorted.bam 2025-08-15 09:30 1.4G 
[   ]POR-74-TP2.sorted.ba..>2025-08-15 09:30 1.1M 
[   ]POR-74-TP3.bam 2025-08-15 09:32 3.0G 
[   ]POR-74-TP3.gtf 2025-08-15 11:24 41M 
[   ]POR-74-TP3.sorted.bam 2025-08-15 09:34 1.9G 
[   ]POR-74-TP3.sorted.ba..>2025-08-15 09:34 1.2M 
[   ]POR-74-TP4.bam 2025-08-15 09:36 2.5G 
[   ]POR-74-TP4.gtf 2025-08-15 11:11 30M 
[   ]POR-74-TP4.sorted.bam 2025-08-15 09:38 1.6G 
[   ]POR-74-TP4.sorted.ba..>2025-08-15 09:38 1.1M 
[   ]POR-83-TP1.bam 2025-08-15 09:40 2.4G 
[   ]POR-83-TP1.gtf 2025-08-15 11:50 44M 
[   ]POR-83-TP1.sorted.bam 2025-08-15 09:41 1.5G 
[   ]POR-83-TP1.sorted.ba..>2025-08-15 09:41 1.1M 
[   ]POR-83-TP2.bam 2025-08-15 09:43 2.6G 
[   ]POR-83-TP2.gtf 2025-08-15 11:26 36M 
[   ]POR-83-TP2.sorted.bam 2025-08-15 09:45 1.6G 
[   ]POR-83-TP2.sorted.ba..>2025-08-15 09:45 1.1M 
[   ]POR-83-TP3.bam 2025-08-15 09:47 2.4G 
[   ]POR-83-TP3.gtf 2025-08-15 10:30 32M 
[   ]POR-83-TP3.sorted.bam 2025-08-15 09:48 1.5G 
[   ]POR-83-TP3.sorted.ba..>2025-08-15 09:48 1.1M 
[   ]POR-83-TP4.bam 2025-08-15 09:51 3.2G 
[   ]POR-83-TP4.gtf 2025-08-15 11:20 33M 
[   ]POR-83-TP4.sorted.bam 2025-08-15 09:53 2.0G 
[   ]POR-83-TP4.sorted.ba..>2025-08-15 09:53 1.2M 
[   ]POR-216-TP1.bam 2025-08-15 07:38 2.6G 
[   ]POR-216-TP1.gtf 2025-08-15 10:46 42M 
[   ]POR-216-TP1.sorted.bam 2025-08-15 07:39 1.6G 
[   ]POR-216-TP1.sorted.b..>2025-08-15 07:39 1.1M 
[   ]POR-216-TP2.bam 2025-08-15 07:41 2.5G 
[   ]POR-216-TP2.gtf 2025-08-15 11:39 46M 
[   ]POR-216-TP2.sorted.bam 2025-08-15 07:42 1.5G 
[   ]POR-216-TP2.sorted.b..>2025-08-15 07:43 1.1M 
[   ]POR-216-TP3.bam 2025-08-15 07:44 2.1G 
[   ]POR-216-TP3.gtf 2025-08-15 11:05 38M 
[   ]POR-216-TP3.sorted.bam 2025-08-15 07:45 1.3G 
[   ]POR-216-TP3.sorted.b..>2025-08-15 07:46 1.1M 
[   ]POR-216-TP4.bam 2025-08-15 07:48 2.8G 
[   ]POR-216-TP4.gtf 2025-08-15 11:08 34M 
[   ]POR-216-TP4.sorted.bam 2025-08-15 07:49 1.7G 
[   ]POR-216-TP4.sorted.b..>2025-08-15 07:50 1.1M 
[   ]POR-236-TP1.bam 2025-08-15 07:52 2.8G 
[   ]POR-236-TP1.gtf 2025-08-15 10:39 46M 
[   ]POR-236-TP1.sorted.bam 2025-08-15 07:53 1.7G 
[   ]POR-236-TP1.sorted.b..>2025-08-15 07:54 1.1M 
[   ]POR-236-TP2.bam 2025-08-15 07:56 2.5G 
[   ]POR-236-TP2.gtf 2025-08-15 10:22 34M 
[   ]POR-236-TP2.sorted.bam 2025-08-15 07:57 1.6G 
[   ]POR-236-TP2.sorted.b..>2025-08-15 07:57 1.1M 
[   ]POR-245-TP1.bam 2025-08-15 07:59 2.6G 
[   ]POR-245-TP1.gtf 2025-08-15 10:32 46M 
[   ]POR-245-TP1.sorted.bam 2025-08-15 08:01 1.6G 
[   ]POR-245-TP1.sorted.b..>2025-08-15 08:01 1.1M 
[   ]POR-245-TP2.bam 2025-08-15 08:03 2.1G 
[   ]POR-245-TP2.gtf 2025-08-15 11:17 34M 
[   ]POR-245-TP2.sorted.bam 2025-08-15 08:04 1.3G 
[   ]POR-245-TP2.sorted.b..>2025-08-15 08:04 1.0M 
[   ]POR-245-TP3.bam 2025-08-15 08:06 2.4G 
[   ]POR-245-TP3.gtf 2025-08-15 11:32 31M 
[   ]POR-245-TP3.sorted.bam 2025-08-15 08:08 1.5G 
[   ]POR-245-TP3.sorted.b..>2025-08-15 08:08 1.1M 
[   ]POR-245-TP4.bam 2025-08-15 08:10 2.4G 
[   ]POR-245-TP4.gtf 2025-08-15 10:27 45M 
[   ]POR-245-TP4.sorted.bam 2025-08-15 08:11 1.4G 
[   ]POR-245-TP4.sorted.b..>2025-08-15 08:11 1.1M 
[   ]POR-260-TP1.bam 2025-08-15 08:13 2.4G 
[   ]POR-260-TP1.gtf 2025-08-15 10:44 51M 
[   ]POR-260-TP1.sorted.bam 2025-08-15 08:14 1.4G 
[   ]POR-260-TP1.sorted.b..>2025-08-15 08:14 1.1M 
[   ]POR-260-TP2.bam 2025-08-15 08:16 2.3G 
[   ]POR-260-TP2.gtf 2025-08-15 11:14 35M 
[   ]POR-260-TP2.sorted.bam 2025-08-15 08:17 1.4G 
[   ]POR-260-TP2.sorted.b..>2025-08-15 08:17 1.0M 
[   ]POR-260-TP3.bam 2025-08-15 08:19 2.3G 
[   ]POR-260-TP3.gtf 2025-08-15 10:19 38M 
[   ]POR-260-TP3.sorted.bam 2025-08-15 08:20 1.4G 
[   ]POR-260-TP3.sorted.b..>2025-08-15 08:20 1.1M 
[   ]POR-260-TP4.bam 2025-08-15 08:22 2.6G 
[   ]POR-260-TP4.gtf 2025-08-15 10:24 40M 
[   ]POR-260-TP4.sorted.bam 2025-08-15 08:24 1.6G 
[   ]POR-260-TP4.sorted.b..>2025-08-15 08:24 1.1M 
[   ]POR-262-TP1.bam 2025-08-15 08:26 2.8G 
[   ]POR-262-TP1.gtf 2025-08-15 11:55 43M 
[   ]POR-262-TP1.sorted.bam 2025-08-15 08:27 1.6G 
[   ]POR-262-TP1.sorted.b..>2025-08-15 08:28 1.1M 
[   ]POR-262-TP2.bam 2025-08-15 08:30 2.7G 
[   ]POR-262-TP2.gtf 2025-08-15 11:34 50M 
[   ]POR-262-TP2.sorted.bam 2025-08-15 08:31 1.7G 
[   ]POR-262-TP2.sorted.b..>2025-08-15 08:31 1.1M 
[   ]POR-262-TP3.bam 2025-08-15 08:34 2.9G 
[   ]POR-262-TP3.gtf 2025-08-15 11:46 45M 
[   ]POR-262-TP3.sorted.bam 2025-08-15 08:35 1.7G 
[   ]POR-262-TP3.sorted.b..>2025-08-15 08:35 1.1M 
[   ]POR-262-TP4.bam 2025-08-15 08:37 2.3G 
[   ]POR-262-TP4.gtf 2025-08-15 10:57 41M 
[   ]POR-262-TP4.sorted.bam 2025-08-15 08:39 1.4G 
[   ]POR-262-TP4.sorted.b..>2025-08-15 08:39 1.1M 
[TXT]exon.txt 2025-10-02 15:35 10M 
[VID]genome.index.1.ht2 2025-08-14 19:35 338M 
[VID]genome.index.2.ht2 2025-08-14 19:35 135M 
[VID]genome.index.3.ht2 2025-08-14 19:27 442K 
[   ]genome.index.4.ht2 2025-08-14 19:27 134M 
[VID]genome.index.5.ht2 2025-08-14 19:43 418M 
[VID]genome.index.6.ht2 2025-08-14 19:43 137M 
[VID]genome.index.7.ht2 2025-08-14 19:27 7.9M 
[VID]genome.index.8.ht2 2025-08-14 19:27 1.6M 
[   ]genome.index.rf 2025-08-14 19:29 6.2G 
[   ]gffcompare_merged.an..>2025-08-19 09:55 126M 
[   ]gffcompare_merged.loci 2025-08-19 09:55 5.9M 
[   ]gffcompare_merged.stats2025-08-19 09:55 1.5K 
[   ]gffcompare_merged.st..>2025-08-19 09:55 2.2M 
[   ]gffcompare_merged.st..>2025-08-19 09:55 12M 
[   ]gffcompare_merged.tr..>2025-08-19 09:55 13M 
[TXT]hisat2-build_stats.txt 2025-10-02 15:35 16K 
[   ]lncRNA.bed 2025-10-02 15:35 1.0M 
[   ]lncRNA.fasta 2025-08-21 08:58 70M 
[   ]lncRNA.filtered.gtf 2025-10-02 15:35 660K 
[   ]lncRNA.gtf 2025-10-02 15:35 1.8M 
[   ]lncRNA_candidates.fasta2025-08-19 09:56 137M 
[   ]lncRNA_candidates.fa..>2025-08-19 10:01 2.1M 
[   ]lncRNA_candidates.gtf 2025-08-19 09:56 5.6M 
[TXT]lncRNA_counts.clean...>2025-10-02 15:35 1.8M 
[TXT]lncRNA_counts.clean.txt2025-10-02 15:35 4.1M 
[TXT]lncRNA_counts.txt 2025-10-02 15:35 4.1M 
[   ]noduplncRNA.gtf 2025-08-19 10:12 1.8M 
[TXT]noncoding_transcript..>2025-10-02 15:35 1.3M 
[TXT]splice_sites.txt 2025-10-02 15:35 8.4M 
[   ]stringtie_merged.gtf 2025-08-16 06:35 123M