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"GATCG":1034713, "GATGA":28897, "GATGT":29308, "GATGC":14549, "GATGG":25129, "GACAA":556948, "GACAT":241962, "GACAC":185302, "GACAG":26380, "GACTA":341085, "GACTT":255140, "GACTC":160240, "GACTG":20549, "GACCA":250821, "GACCT":176112, "GACCC":142243, "GACCG":81323, "GACGA":176583, "GACGT":93123, "GACGC":77015, "GACGG":12947, "GAGAA":119246, "GAGAT":34609, "GAGAC":25330, "GAGAG":139348, "GAGTA":30599, "GAGTT":51411, "GAGTC":26888, "GAGTG":115687, "GAGCA":30423, "GAGCT":38054, "GAGCC":18790, "GAGCG":752222, "GAGGA":101508, "GAGGT":33042, "GAGGC":17696, "GAGGG":598582, "GTAAA":817670, "GTAAT":452617, "GTAAC":382593, "GTAAG":36939, "GTATA":388532, "GTATT":464455, "GTATC":194355, "GTATG":29286, "GTACA":279395, "GTACT":209900, "GTACC":148849, "GTACG":77592, "GTAGA":48589, "GTAGT":59199, "GTAGC":23749, "GTAGG":127336, "GTTAA":461875, "GTTAT":402492, "GTTAC":222688, "GTTAG":32128, "GTTTA":391293, "GTTTT":588187, "GTTTC":313649, "GTTTG":110781, "GTTCA":249083, "GTTCT":203879, "GTTCC":169460, "GTTCG":74115, "GTTGA":51933, "GTTGT":208685, "GTTGC":58327, "GTTGG":96411, "GTCAA":348780, "GTCAT":257232, "GTCAC":183926, "GTCAG":21640, "GTCTA":204049, "GTCTT":230850, "GTCTC":172441, "GTCTG":22708, "GTCCA":149986, "GTCCT":146036, "GTCCC":131146, "GTCCG":44440, "GTCGA":112418, "GTCGT":772244, "GTCGC":65402, "GTCGG":28752, "GTGAA":45247, "GTGAT":40469, "GTGAC":23506, "GTGAG":31182, "GTGTA":215362, "GTGTT":207640, "GTGTC":93142, "GTGTG":364836, "GTGCA":24348, "GTGCT":28809, "GTGCC":17420, "GTGCG":24348, "GTGGA":255517, "GTGGT":319379, "GTGGC":29874, "GTGGG":562341, "GCAAA":626072, "GCAAT":269674, "GCAAC":253065, "GCAAG":31870, "GCATA":236024, "GCATT":173625, "GCATC":119502, "GCATG":21697, "GCACA":176723, "GCACT":128503, "GCACC":108433, "GCACG":53886, "GCAGA":32139, "GCAGT":24893, "GCAGC":20195, "GCAGG":16740, "GCTAA":358261, "GCTAT":233128, "GCTAC":173921, "GCTAG":15646, "GCTTA":244400, "GCTTT":245767, "GCTTC":151953, "GCTTG":30504, "GCTCA":153454, "GCTCT":139357, "GCTCC":112254, "GCTCG":62264, "GCTGA":17220, "GCTGT":28480, "GCTGC":20503, "GCTGG":14794, "GCCAA":264100, "GCCAT":155086, "GCCAC":125129, "GCCAG":16212, "GCCTA":156884, "GCCTT":145189, "GCCTC":111577, "GCCTG":16346, "GCCCA":123515, "GCCCT":102602, "GCCCC":108435, "GCCCG":37377, "GCCGA":78826, "GCCGT":67163, "GCCGC":52879, "GCCGG":7899, "GCGAA":199389, "GCGAT":89602, "GCGAC":84867, "GCGAG":19168, "GCGTA":99180, "GCGTT":81426, "GCGTC":743406, "GCGTG":80805, "GCGCA":66068, "GCGCT":61415, "GCGCC":56287, "GCGCG":52520, "GCGGA":17414, "GCGGT":15313, "GCGGC":12591, "GCGGG":35491, "GGAAA":420040, "GGAAT":31780, "GGAAC":24324, "GGAAG":1116726, "GGATA":26551, "GGATT":88240, "GGATC":33985, "GGATG":26229, "GGACA":23214, "GGACT":24662, "GGACC":16775, "GGACG":14323, "GGAGA":142101, "GGAGT":56770, "GGAGC":31693, "GGAGG":436678, "GGTAA":34298, "GGTAT":117577, "GGTAC":20736, "GGTAG":37821, "GGTTA":33473, "GGTTT":176907, "GGTTC":38630, "GGTTG":121636, "GGTCA":24396, "GGTCT":51153, "GGTCC":17703, "GGTCG":27808, "GGTGA":31182, "GGTGT":305279, "GGTGC":23717, "GGTGG":192020, "GGCAA":36566, "GGCAT":21941, "GGCAC":13472, "GGCAG":17504, "GGCTA":23197, "GGCTT":41914, "GGCTC":30564, "GGCTG":17043, "GGCCA":18439, "GGCCT":25361, "GGCCC":14643, "GGCCG":9635, "GGCGA":19232, "GGCGT":21171, "GGCGC":11895, "GGCGG":28812, "GGGAA":577523, "GGGAT":74209, "GGGAC":22371, "GGGAG":351057, "GGGTA":123300, "GGGTT":147960, "GGGTC":38572, "GGGTG":238619, "GGGCA":18938, "GGGCT":39676, "GGGCC":14330, "GGGCG":29954, "GGGGA":750465, "GGGGT":248178, "GGGGC":46813, "GGGGG":11149832 }, "overrepresented_sequences": { } }, "read1_after_filtering": { "total_reads": 38121799, "total_bases": 5088289476, "q20_bases": 4904528047, "q30_bases": 4610471133, "total_cycles": 135, "quality_curves": { 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"T":[39.5562,39.5423,39.5634,39.57,39.5556,39.5659,39.5501,39.557,39.5452,39.548,39.3469,39.3413,39.3449,39.3283,39.3303,39.3192,39.3156,39.3051,39.3007,39.2887,39.322,39.2961,39.2964,39.2959,39.2854,39.2577,39.2592,39.2542,39.2359,39.2349,39.2259,39.2127,39.2,39.1854,39.1647,39.1546,39.1481,39.1325,39.1197,39.1007,39.0891,39.0769,39.061,39.0536,39.0257,39.0106,38.9871,38.9811,38.9551,38.9382,38.9204,38.906,38.8905,38.8592,38.8545,38.8199,38.7987,38.7794,38.7546,38.7316,38.7172,38.695,38.6759,38.6453,38.6223,38.6119,38.5769,38.5629,38.5451,38.5135,38.4905,38.4646,38.4508,38.4304,38.4208,38.3977,38.3697,38.3479,38.3054,38.2963,38.2653,38.2401,38.2235,38.2052,38.1852,38.1583,38.1241,38.0869,38.0742,38.057,38.0268,38.0104,37.9831,37.9708,37.9362,37.9087,37.8839,37.8464,37.8234,37.8,37.7682,37.7521,37.7295,37.7047,37.6936,37.6496,37.6273,37.6002,37.5659,37.5361,37.5145,37.4945,37.4561,37.4438,37.3994,37.3956,37.3539,37.3321,37.304,37.2889,37.2542,37.2693,37.2479,37.2213,37.207,37.2333,37.1948,37.1506,37.1054,37.0634,37.0436,37.0155,36.9897,36.9649,36.941], 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"ACGTC":108295, "ACGTG":466493, "ACGCA":21838, "ACGCT":24184, "ACGCC":9187, "ACGCG":162702, "ACGGA":357530, "ACGGT":680418, "ACGGC":52860, "ACGGG":256820, "AGAAA":14814115, "AGAAT":12615959, "AGAAC":229425, "AGAAG":6714943, "AGATA":11019282, "AGATT":17453696, "AGATC":217406, "AGATG":7148059, "AGACA":95395, "AGACT":119987, "AGACC":19182, "AGACG":342171, "AGAGA":6300960, "AGAGT":7868075, "AGAGC":118540, "AGAGG":4178688, "AGTAA":14223973, "AGTAT":15727607, "AGTAC":239065, "AGTAG":7919183, "AGTTA":20038579, "AGTTT":36963043, "AGTTC":556780, "AGTTG":14084587, "AGTCA":123432, "AGTCT":158455, "AGTCC":28202, "AGTCG":609687, "AGTGA":8751934, "AGTGT":12055615, "AGTGC":125805, "AGTGG":5609402, "AGCAA":88026, "AGCAT":77141, "AGCAC":25488, "AGCAG":50771, "AGCTA":77661, "AGCTT":147717, "AGCTC":19649, "AGCTG":66541, "AGCCA":20239, "AGCCT":24827, "AGCCC":14008, "AGCCG":19595, "AGCGA":429274, "AGCGT":553577, "AGCGC":56883, "AGCGG":298156, "AGGAA":7381550, "AGGAT":7103976, "AGGAC":120360, "AGGAG":3986704, "AGGTA":7899981, "AGGTT":14267565, "AGGTC":195324, "AGGTG":5380273, "AGGCA":42327, "AGGCT":59042, "AGGCC":16536, "AGGCG":272664, "AGGGA":4183045, "AGGGT":6256940, "AGGGC":82342, "AGGGG":3258609, "TAAAA":36132369, "TAAAT":37603853, "TAAAC":661915, "TAAAG":16040754, "TAATA":31238125, "TAATT":47348765, "TAATC":519503, "TAATG":16797117, "TAACA":295602, "TAACT":412537, "TAACC":55340, "TAACG":857596, "TAAGA":13190436, "TAAGT":19745407, "TAAGC":261453, "TAAGG":8824235, "TATAA":28868755, "TATAT":38893150, "TATAC":482146, "TATAG":16479718, "TATTA":42511461, "TATTT":83345614, "TATTC":1125054, "TATTG":28526283, "TATCA":258045, "TATCT":412186, "TATCC":45238, "TATCG":1294915, "TATGA":15436641, "TATGT":26097923, "TATGC":250942, "TATGG":10937815, "TACAA":229028, "TACAT":240979, "TACAC":48515, "TACAG":123648, "TACTA":240181, "TACTT":514854, "TACTC":58587, "TACTG":182336, "TACCA":50306, "TACCT":47812, "TACCC":23963, "TACCG":24719, "TACGA":727627, "TACGT":1246204, "TACGC":89745, 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"TTCCT":348948, "TTCCC":161088, "TTCCG":118001, "TTCGA":1682274, "TTCGT":2823028, "TTCGC":212780, "TTCGG":1343901, "TTGAA":25274300, "TTGAT":30477755, "TTGAC":394674, "TTGAG":13117387, "TTGTA":32307812, "TTGTT":63946132, "TTGTC":919598, "TTGTG":21468544, "TTGCA":185334, "TTGCT":286254, "TTGCC":41385, "TTGCG":838374, "TTGGA":13975081, "TTGGT":23154965, "TTGGC":275679, "TTGGG":9735540, "TCAAA":799094, "TCAAT":579717, "TCAAC":209068, "TCAAG":263826, "TCATA":368819, "TCATT":827316, "TCATC":97861, "TCATG":242899, "TCACA":99718, "TCACT":187985, "TCACC":64106, "TCACG":72366, "TCAGA":200046, "TCAGT":331877, "TCAGC":27617, "TCAGG":168474, "TCTAA":469830, "TCTAT":569523, "TCTAC":61914, "TCTAG":245524, "TCTTA":642907, "TCTTT":2452978, "TCTTC":387890, "TCTTG":569189, "TCTCA":167995, "TCTCT":235576, "TCTCC":73868, "TCTCG":90662, "TCTGA":285551, "TCTGT":517706, "TCTGC":35042, "TCTGG":241554, "TCCAA":122851, "TCCAT":77796, "TCCAC":54199, "TCCAG":41204, "TCCTA":66434, "TCCTT":304209, "TCCTC":87099, "TCCTG":62292, "TCCCA":72753, "TCCCT":81869, "TCCCC":63543, "TCCCG":24936, "TCCGA":46740, "TCCGT":76947, "TCCGC":13054, "TCCGG":40206, "TCGAA":1041691, "TCGAT":1302606, "TCGAC":104528, "TCGAG":670660, "TCGTA":1411182, "TCGTT":2767718, "TCGTC":217990, "TCGTG":813501, "TCGCA":27253, "TCGCT":40016, "TCGCC":12493, "TCGCG":314889, "TCGGA":658853, "TCGGT":1105335, "TCGGC":80235, "TCGGG":550552, "TGAAA":20315975, "TGAAT":18480097, "TGAAC":316439, "TGAAG":9559049, "TGATA":17888503, "TGATT":30203949, "TGATC":340038, "TGATG":12460353, "TGACA":128655, "TGACT":183348, "TGACC":26150, "TGACG":463056, "TGAGA":7906120, "TGAGT":11357805, "TGAGC":126565, "TGAGG":5571873, "TGTAA":21433088, "TGTAT":26507862, "TGTAC":375310, "TGTAG":12252301, "TGTTA":30690473, "TGTTT":61245887, "TGTTC":1004779, "TGTTG":22898322, "TGTCA":291045, "TGTCT":412061, "TGTCC":55080, "TGTCG":837104, "TGTGA":12433158, "TGTGT":20097948, "TGTGC":180142, "TGTGG":8317023, "TGCAA":128996, "TGCAT":119416, "TGCAC":26847, "TGCAG":69128, 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"CACAG":34202, "CACTA":51026, "CACTT":191251, "CACTC":53160, "CACTG":46373, "CACCA":46412, "CACCT":38668, "CACCC":34170, "CACCG":15133, "CACGA":51673, "CACGT":54719, "CACGC":12877, "CACGG":27660, "CAGAA":147859, "CAGAT":127642, "CAGAC":27207, "CAGAG":78107, "CAGTA":138948, "CAGTT":315974, "CAGTC":32757, "CAGTG":113875, "CAGCA":23760, "CAGCT":24384, "CAGCC":11837, "CAGCG":20564, "CAGGA":80782, "CAGGT":131042, "CAGGC":14066, "CAGGG":75587, "CTAAA":348802, "CTAAT":299045, "CTAAC":60177, "CTAAG":138309, "CTATA":253218, "CTATT":504695, "CTATC":49247, "CTATG":167661, "CTACA":41349, "CTACT":60307, "CTACC":19016, "CTACG":26463, "CTAGA":119300, "CTAGT":200932, "CTAGC":16696, "CTAGG":90752, "CTTAA":371775, "CTTAT":458538, "CTTAC":60360, "CTTAG":197224, "CTTTA":570524, "CTTTT":2462608, "CTTTC":427059, "CTTTG":524230, "CTTCA":193675, "CTTCT":273831, "CTTCC":97001, "CTTCG":96201, "CTTGA":260834, "CTTGT":469182, "CTTGC":38095, "CTTGG":205901, "CTCAA":141821, "CTCAT":85755, "CTCAC":53788, "CTCAG":42601, "CTCTA":64284, "CTCTT":220631, "CTCTC":59396, "CTCTG":56536, "CTCCA":39752, "CTCCT":71697, "CTCCC":43810, "CTCCG":17985, "CTCGA":44996, "CTCGT":68745, "CTCGC":12603, "CTCGG":33875, "CTGAA":202893, "CTGAT":207366, "CTGAC":29494, "CTGAG":101216, "CTGTA":223175, "CTGTT":468501, "CTGTC":56181, "CTGTG":169099, "CTGCA":22810, "CTGCT":31780, "CTGCC":10955, "CTGCG":21363, "CTGGA":115822, "CTGGT":200021, "CTGGC":16123, "CTGGG":93266, "CCAAA":140059, "CCAAT":58301, "CCAAC":61573, "CCAAG":37312, "CCATA":40162, "CCATT":79563, "CCATC":22917, "CCATG":30054, "CCACA":34786, "CCACT":53968, "CCACC":33061, "CCACG":21529, "CCAGA":26274, "CCAGT":36321, "CCAGC":10820, "CCAGG":21641, "CCTAA":51911, "CCTAT":40203, "CCTAC":19979, "CCTAG":20895, "CCTTA":56644, "CCTTT":331155, "CCTTC":89461, "CCTTG":59300, "CCTCA":49011, "CCTCT":51790, "CCTCC":43043, "CCTCG":18911, "CCTGA":34007, "CCTGT":50136, "CCTGC":11792, "CCTGG":26442, "CCCAA":66182, "CCCAT":31061, "CCCAC":34637, "CCCAG":18398, "CCCTA":23600, "CCCTT":106610, "CCCTC":40190, "CCCTG":20215, "CCCCA":39628, "CCCCT":49981, "CCCCC":56183, "CCCCG":11580, "CCCGA":17979, "CCCGT":19417, "CCCGC":6865, "CCCGG":11308, "CCGAA":45325, "CCGAT":27497, "CCGAC":11235, "CCGAG":26317, "CCGTA":28777, "CCGTT":76969, "CCGTC":16506, "CCGTG":24740, "CCGCA":8922, "CCGCT":11286, "CCGCC":6517, "CCGCG":9688, "CCGGA":20851, "CCGGT":30434, "CCGGC":5985, "CCGGG":18097, "CGAAA":851341, "CGAAT":710743, "CGAAC":91311, "CGAAG":483250, "CGATA":795827, "CGATT":1291081, "CGATC":99268, "CGATG":443103, "CGACA":28088, "CGACT":38110, "CGACC":11893, "CGACG":165190, "CGAGA":403733, "CGAGT":577385, "CGAGC":57005, "CGAGG":333015, "CGTAA":937376, "CGTAT":1108618, "CGTAC":89844, "CGTAG":606625, "CGTTA":1380038, "CGTTT":2716611, "CGTTC":220509, "CGTTG":879200, "CGTCA":46632, "CGTCT":54291, "CGTCC":16498, "CGTCG":297810, "CGTGA":488746, "CGTGT":701922, "CGTGC":51647, "CGTGG":389474, "CGCAA":27050, "CGCAT":18897, "CGCAC":10375, "CGCAG":19780, "CGCTA":18545, "CGCTT":44904, "CGCTC":10477, "CGCTG":19247, "CGCCA":9517, "CGCCT":10024, "CGCCC":5887, "CGCCG":8568, "CGCGA":191807, "CGCGT":278225, "CGCGC":45895, "CGCGG":138203, "CGGAA":451185, "CGGAT":511302, "CGGAC":49804, "CGGAG":293617, "CGGTA":648526, "CGGTT":1128919, "CGGTC":89547, "CGGTG":422469, "CGGCA":13211, "CGGCT":17141, "CGGCC":6544, "CGGCG":147929, "CGGGA":299033, "CGGGT":447496, "CGGGC":34723, "CGGGG":257039, "GAAAA":18520659, "GAAAT":18735087, "GAAAC":379901, "GAAAG":8187254, "GAATA":12190457, "GAATT":20096396, "GAATC":236522, "GAATG":7668576, "GAACA":162714, "GAACT":228754, "GAACC":34139, "GAACG":382043, "GAAGA":7254074, "GAAGT":9442886, "GAAGC":140572, "GAAGG":4447045, "GATAA":13487752, "GATAT":15950503, "GATAC":216761, "GATAG":7242402, "GATTA":16251916, "GATTT":31815571, "GATTC":462508, "GATTG":11972604, "GATCA":103296, "GATCT":147406, "GATCC":19498, "GATCG":547445, "GATGA":8599103, "GATGT":11389400, "GATGC":114730, "GATGG":5075018, "GACAA":123160, "GACAT":105093, "GACAC":26297, "GACAG":60157, "GACTA":91951, "GACTT":219503, "GACTC":33147, "GACTG":82622, "GACCA":23469, "GACCT":20798, "GACCC":11297, "GACCG":14071, "GACGA":385127, "GACGT":548088, "GACGC":46258, "GACGG":251756, "GAGAA":7236219, "GAGAT":7317434, "GAGAC":122066, "GAGAG":4126761, "GAGTA":6884842, "GAGTT":13018945, "GAGTC":177796, "GAGTG":5017355, "GAGCA":49387, "GAGCT":56173, "GAGCC":18094, "GAGCG":261319, "GAGGA":4188522, "GAGGT":5961917, "GAGGC":87276, "GAGGG":2996578, "GTAAA":18368246, "GTAAT":18975379, "GTAAC":317300, "GTAAG":8619668, "GTATA":15535520, "GTATT":27811940, "GTATC":379836, "GTATG":10449300, "GTACA":120587, "GTACT":182736, "GTACC":22599, "GTACG":552007, "GTAGA":7545693, "GTAGT":13225892, "GTAGC":182272, "GTAGG":5175186, "GTTAA":22009898, "GTTAT":31458126, "GTTAC":462967, "GTTAG":12371534, "GTTTA":31249373, "GTTTT":68990130, "GTTTC":1508733, "GTTTG":23843122, "GTTCA":414785, "GTTCT":674630, "GTTCC":80086, "GTTCG":1105364, "GTTGA":13642348, "GTTGT":24167098, "GTTGC":270281, "GTTGG":9301391, "GTCAA":224260, "GTCAT":191311, "GTCAC":49192, "GTCAG":97959, "GTCTA":159042, "GTCTT":407039, "GTCTC":51786, "GTCTG":139483, "GTCCA":28214, "GTCCT":50320, "GTCCC":19729, "GTCCG":22078, "GTCGA":617482, "GTCGT":1081955, "GTCGC":82223, "GTCGG":460008, "GTGAA":9689158, "GTGAT":12784737, "GTGAC":167774, "GTGAG":5056947, "GTGTA":11099953, "GTGTT":21223588, "GTGTC":300420, "GTGTG":8660567, "GTGCA":60496, "GTGCT":93679, "GTGCC":11490, "GTGCG":291030, "GTGGA":5628960, "GTGGT":9233802, "GTGGC":120856, "GTGGG":3881032, "GCAAA":123903, "GCAAT":92987, "GCAAC":28734, "GCAAG":54310, "GCATA":75422, "GCATT":121312, "GCATC":14637, "GCATG":53621, "GCACA":23948, "GCACT":23278, "GCACC":9479, "GCACG":17067, "GCAGA":47841, "GCAGT":68940, "GCAGC":17874, "GCAGG":35574, "GCTAA":88122, "GCTAT":113091, "GCTAC":18397, "GCTAG":50640, "GCTTA":114974, "GCTTT":294813, "GCTTC":36404, "GCTTG":101263, "GCTCA":18316, "GCTCT":27328, "GCTCC":10851, "GCTCG":15048, "GCTGA":69458, "GCTGT":106896, "GCTGC":15656, "GCTGG":50445, 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"GGCCC":7156, "GGCCG":5550, "GGCGA":8647, "GGCGT":8045, "GGCGC":6159, "GGCGG":8027, "GGGAA":50693, "GGGAT":14220, "GGGAC":7225, "GGGAG":66769, "GGGTA":17464, "GGGTT":34981, "GGGTC":8655, "GGGTG":37243, "GGGCA":9747, "GGGCT":11505, "GGGCC":5279, "GGGCG":8002, "GGGGA":86383, "GGGGT":40924, "GGGGC":10573, "GGGGG":1105090 }, "overrepresented_sequences": { } }, "command": "/home/shared/fastp-v0.24.0/fastp --in1 POR-245-TP4_R1_001.fastq.gz --in2 POR-245-TP4_R2_001.fastq.gz --detect_adapter_for_pe --trim_poly_g --trim_poly_x --thread 16 --trim_front1 15 --trim_front2 15 --html /home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/output/01.00-E-Peve-WGBS-trimming-fastp-FastQC-MultiQC/POR-245-TP4_R1_001.fastp-trim.report.html --json /home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/output/01.00-E-Peve-WGBS-trimming-fastp-FastQC-MultiQC/POR-245-TP4_R1_001.fastp-trim.report.json --out1 /home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/output/01.00-E-Peve-WGBS-trimming-fastp-FastQC-MultiQC/POR-245-TP4_R1_001.fastp-trim.fq.gz --out2 /home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/output/01.00-E-Peve-WGBS-trimming-fastp-FastQC-MultiQC/POR-245-TP4_R2_001.fastp-trim.fq.gz " }