Index of /gitrepos/urol-e5/timeseries_molecular/D-Apul/output/00.30-D-Apul-transcriptome-assembly-Trinity/PASA

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory   -  
[ ]11.ooc 2026-01-08 23:03 7.8K 
[ ]Apulchra-genome.gff 2025-09-15 16:34 44M 
[ ]__all_transcripts.fasta2026-01-15 04:02 1.9G 
[ ]__all_transcripts.fa..>2026-01-15 20:54 139M 
[ ]__all_transcripts.fa..>2026-01-15 05:31 102M 
[ ]__all_transcripts.fa..>2026-01-15 05:39 587M 
[ ]__all_transcripts.fa..>2026-01-15 05:30 456M 
[ ]__all_transcripts.fa..>2026-01-15 05:39 6.5M 
[ ]__all_transcripts.fa..>2026-01-15 05:35 256M 
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[DIR]__all_transcripts.fa..>2026-01-15 04:33 -  
[DIR]__all_transcripts.fa..>2026-01-15 05:27 -  
[ ]__pasa_apul_pasa_mys..>2026-03-01 10:56 798  
[DIR]__pasa_apul_pasa_mys..>2026-03-01 10:56 -  
[ ]alignAssembly.config 2026-03-13 14:57 504  
[ ]alignment.validation..>2026-01-16 16:19 1.1G 
[ ]alt_splicing_analysi..>2026-02-19 23:19 766  
[ ]annotCompare.config 2026-02-21 10:01 504  
[ ]apul-PASA.bed 2026-03-11 16:08 6.2M 
[ ]apul-PASA.bed.md5 2026-03-11 16:08 48  
[ ]apul-PASA.gff3 2026-03-11 16:08 84M 
[ ]apul-PASA.gff3.md5 2026-03-11 16:08 49  
[ ]apul_pasa.alt_splice..>2026-02-20 00:03 11M 
[TXT]apul_pasa.alt_splici..>2026-02-20 00:15 20M 
[TXT]apul_pasa.alt_splici..>2026-02-20 00:22 177M 
[ ]apul_pasa.assemblies..>2026-01-28 12:41 562M 
[ ]apul_pasa.correlated..>2026-02-20 00:03 9.4M 
[ ]apul_pasa.failed_bla..>2026-01-17 07:09 223M 
[ ]apul_pasa.failed_bla..>2026-01-17 07:25 456M 
[ ]apul_pasa.failed_gma..>2026-01-17 08:18 229M 
[ ]apul_pasa.failed_gma..>2026-01-17 08:33 480M 
[ ]apul_pasa.failed_min..>2026-01-17 09:39 205M 
[ ]apul_pasa.failed_min..>2026-01-17 09:50 421M 
[ ]apul_pasa.gene_struc..>2026-02-17 01:22 5.9M 
[ ]apul_pasa.gene_struc..>2026-02-17 01:21 79M 
[ ]apul_pasa.gene_struc..>2026-02-21 10:02 169M 
[ ]apul_pasa.gene_struc..>2026-03-01 10:56 6.2M 
[ ]apul_pasa.gene_struc..>2026-03-11 16:08 90  
[ ]apul_pasa.gene_struc..>2026-03-01 10:56 84M 
[ ]apul_pasa.gene_struc..>2026-03-11 16:08 91  
[ ]apul_pasa.indiv_spli..>2026-02-20 00:03 410M 
[ ]apul_pasa.pasa_align..>2026-01-27 19:01 945M 
[ ]apul_pasa.pasa_assem..>2026-01-29 01:40 41M 
[ ]apul_pasa.pasa_assem..>2026-01-29 01:36 130M 
[ ]apul_pasa.pasa_assem..>2026-01-29 01:48 209M 
[TXT]apul_pasa.pasa_assem..>2026-01-29 01:54 143M 
[ ]apul_pasa.polyAsites..>2026-01-17 10:24 273K 
[ ]apul_pasa.valid_blat..>2026-01-17 06:41 138M 
[ ]apul_pasa.valid_blat..>2026-01-17 06:33 230M 
[ ]apul_pasa.valid_blat..>2026-01-17 07:00 578M 
[ ]apul_pasa.valid_gmap..>2026-01-17 07:46 141M 
[ ]apul_pasa.valid_gmap..>2026-01-17 07:36 241M 
[ ]apul_pasa.valid_gmap..>2026-01-17 08:09 603M 
[ ]apul_pasa.valid_mini..>2026-01-17 09:06 148M 
[ ]apul_pasa.valid_mini..>2026-01-17 08:51 261M 
[ ]apul_pasa.valid_mini..>2026-01-17 09:33 641M 
[ ]apul_pasa_backup.sql 2026-03-11 15:01 9.6G 
[ ]blat.spliced_alignme..>2026-01-09 10:40 484M 
[TXT]cdna_alignment_mysql..>2025-12-21 10:51 16K 
[TXT]conf.txt 2026-01-30 12:27 263  
[TXT]err_seqcl_transcript..>2026-01-08 12:21 1.3K 
[ ]gmap.spliced_alignme..>2026-01-08 23:01 798M 
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[TXT]minimap2.splice_alig..>2026-01-09 11:50 0  
[ ]minimap2.spliced_ali..>2026-01-09 11:50 631M 
[ ]outparts_cln.sort 2026-01-08 12:20 109K 
[DIR]pasa_run.log.dir/ 2026-02-21 12:41 -  
[ ]pasapipeline.v2.5.3...>2025-12-20 22:33 472M 
[DIR]pblat_outdir/ 2026-01-09 10:40 -  
[ ]pipeliner.2076430.cmds 2026-01-15 04:02 294  
[ ]pipeliner.2076530.cmds 2026-01-15 05:35 3.0K 
[ ]pipeliner.2076693.cmds 2026-01-15 05:27 2.9K 
[ ]proteins-PASA.fasta 2026-03-11 16:09 20M 
[ ]proteins-PASA.fasta.fai2026-03-11 16:09 2.0M 
[ ]proteins-PASA.fasta.md52026-03-11 16:09 54  
[TXT]seqcl_transcripts.fa..>2026-01-08 12:21 1.1K 
[ ]tdn.accs 2025-12-20 22:35 45M 
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[TXT]tmp-41350-90107-out...>2026-01-08 23:02 0  
[ ]transcripts.fasta 2025-12-20 22:35 1.8G 
[ ]transcripts.fasta.cidx 2026-01-08 12:16 137M 
[ ]transcripts.fasta.clean2026-01-08 12:21 1.8G 
[ ]transcripts.fasta.cl..>2026-01-08 12:35 111M 
[ ]transcripts.fasta.cl..>2026-01-09 11:46 450M 
[ ]transcripts.fasta.cl..>2026-01-09 11:46 613K 
[TXT]transcripts.fasta.cl..>2026-01-09 11:46 0  
[ ]transcripts.fasta.cln 2026-01-08 12:20 155M