```bash
# Load bash variables into memory
source .bashvars

# Copy genome FastA to ShortStack-compatible filename (ending with .fa)
cp ${genome_fasta_dir}/${genome_fasta_name} ${genome_fasta_dir}/${shortstack_genome_fasta_name}

# Confirm
ls -lh ${genome_fasta_dir}/${shortstack_genome_fasta_name}
```

```
-rw-r--r-- 1 sam sam 460M Nov  6 12:40 /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/data/Amil/ncbi_dataset/data/GCF_013753865.1/GCF_013753865.1_Amil_v2.1_genomic.fa
```