CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 443690 1622930 21.47 2066620 2 445787 2912703 13.27 3358490 3 375953 3318530 10.18 3694483 4 292477 2383907 10.93 2676384 5 138492 3149518 4.21 3288010 6 119790 2111596 5.37 2231386 7 114640 2028715 5.35 2143355 8 112951 2126193 5.04 2239144 9 112106 2091395 5.09 2203501 10 110761 2092770 5.03 2203531 11 114490 2133308 5.09 2247798 12 110936 2177073 4.85 2288009 13 105900 2182096 4.63 2287996 14 105069 2234199 4.49 2339268 15 104042 2289880 4.35 2393922 16 103460 2255583 4.39 2359043 17 102481 2262181 4.33 2364662 18 97967 2395406 3.93 2493373 19 96808 2320965 4.00 2417773 20 99059 2352216 4.04 2451275 21 96135 2380763 3.88 2476898 22 95574 2365980 3.88 2461554 23 94773 2393816 3.81 2488589 24 91810 2414404 3.66 2506214 25 92354 2403716 3.70 2496070 26 92915 2426842 3.69 2519757 27 90073 2463853 3.53 2553926 28 89818 2450223 3.54 2540041 29 89698 2458012 3.52 2547710 30 86980 2480969 3.39 2567949 31 87066 2462281 3.42 2549347 32 88749 2482383 3.45 2571132 33 85540 2494868 3.31 2580408 34 85344 2477452 3.33 2562796 35 85661 2500567 3.31 2586228 36 83405 2526401 3.20 2609806 37 84570 2512610 3.26 2597180 38 83783 2523767 3.21 2607550 39 81862 2537801 3.12 2619663 40 82334 2509671 3.18 2592005 41 82041 2508212 3.17 2590253 42 79764 2527735 3.06 2607499 43 79905 2501684 3.10 2581589 44 79950 2518210 3.08 2598160 45 79052 2540631 3.02 2619683 46 78758 2510147 3.04 2588905 47 79338 2527501 3.04 2606839 48 78555 2530310 3.01 2608865 49 77221 2506041 2.99 2583262 50 77715 2504518 3.01 2582233 51 76456 2513898 2.95 2590354 52 76949 2484101 3.00 2561050 53 76557 2477435 3.00 2553992 54 75660 2472272 2.97 2547932 55 75519 2449899 2.99 2525418 56 75175 2454778 2.97 2529953 57 74382 2459213 2.94 2533595 58 74080 2425381 2.96 2499461 59 75078 2429132 3.00 2504210 60 73512 2433603 2.93 2507115 61 73657 2394611 2.98 2468268 62 74038 2383832 3.01 2457870 63 72871 2379245 2.97 2452116 64 72899 2341475 3.02 2414374 65 73117 2324874 3.05 2397991 66 72549 2328725 3.02 2401274 67 72421 2296589 3.06 2369010 68 72278 2283584 3.07 2355862 69 71332 2273909 3.04 2345241 70 71277 2244810 3.08 2316087 71 71156 2234241 3.09 2305397 72 69971 2214399 3.06 2284370 73 71311 2175959 3.17 2247270 74 70563 2161877 3.16 2232440 75 69326 2146733 3.13 2216059 76 68767 2112882 3.15 2181649 77 69157 2092226 3.20 2161383 78 67756 2085326 3.15 2153082 79 67250 2048543 3.18 2115793 80 68191 2031033 3.25 2099224 81 66860 2015162 3.21 2082022 82 66664 1978205 3.26 2044869 83 66313 1962196 3.27 2028509 84 65669 1946781 3.26 2012450 85 65663 1911689 3.32 1977352 86 65228 1889250 3.34 1954478 87 64550 1869964 3.34 1934514 88 64092 1841409 3.36 1905501 89 63545 1822226 3.37 1885771 90 63337 1799410 3.40 1862747 91 62516 1767861 3.42 1830377 92 63108 1741486 3.50 1804594 93 61438 1724476 3.44 1785914 94 61660 1695714 3.51 1757374 95 60669 1671910 3.50 1732579 96 59891 1658448 3.49 1718339 97 59545 1620401 3.54 1679946 98 59092 1601975 3.56 1661067 99 58194 1578927 3.55 1637121 100 57766 1546466 3.60 1604232 101 57190 1527153 3.61 1584343 102 56237 1508383 3.59 1564620 103 56480 1475868 3.69 1532348 104 55144 1453462 3.66 1508606 105 54631 1439042 3.66 1493673 106 54663 1407596 3.74 1462259 107 54092 1392974 3.74 1447066 108 53419 1371682 3.75 1425101 109 52360 1344148 3.75 1396508 110 52216 1324374 3.79 1376590 111 51677 1310537 3.79 1362214 112 51378 1277909 3.87 1329287 113 50450 1263911 3.84 1314361 114 49618 1241292 3.84 1290910 115 49105 1214512 3.89 1263617 116 49282 1201783 3.94 1251065 117 48215 1180470 3.92 1228685 118 47778 1162656 3.95 1210434 119 47400 1139668 3.99 1187068 120 46667 1127621 3.97 1174288 121 45806 1100851 3.99 1146657 122 45767 1083469 4.05 1129236 123 45131 1068472 4.05 1113603 124 44269 1047660 4.05 1091929 125 43898 1026973 4.10 1070871 126 42911 1009332 4.08 1052243 127 42353 987676 4.11 1030029 128 42275 971964 4.17 1014239 129 41545 957173 4.16 998718 130 40545 937991 4.14 978536 131 40215 919588 4.19 959803 132 39557 908858 4.17 948415 133 39018 888796 4.21 927814 134 38552 872307 4.23 910859 135 38258 857831 4.27 896089 136 37554 838964 4.28 876518 137 37268 823067 4.33 860335 138 36619 812599 4.31 849218 139 36044 791949 4.35 827993 140 35530 776255 4.38 811785 141 34978 765275 4.37 800253 142 34386 747659 4.40 782045 143 33598 734178 4.38 767776 144 33234 721852 4.40 755086 145 32450 705152 4.40 737602 146 31988 693034 4.41 725022 147 32485 688001 4.51 720486 148 33333 675067 4.71 708400 149 35405 669276 5.02 704681 150 32381 653508 4.72 685889 151 30366 607658 4.76 638024 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 677565 5479980 11.00 6157545 2 436724 1873998 18.90 2310722 3 276333 2727393 9.20 3003726 4 245001 2361273 9.40 2606274 5 92964 3241468 2.79 3334432 6 88221 3961859 2.18 4050080 7 83339 2616375 3.09 2699714 8 80413 2614372 2.98 2694785 9 72519 2613797 2.70 2686316 10 80577 2573676 3.04 2654253 11 73406 2645034 2.70 2718440 12 66099 2737899 2.36 2803998 13 60393 2793452 2.12 2853845 14 72311 2789782 2.53 2862093 15 58838 2801424 2.06 2860262 16 65083 2804017 2.27 2869100 17 53932 2883104 1.84 2937036 18 47831 2882073 1.63 2929904 19 47081 2932142 1.58 2979223 20 48116 2890780 1.64 2938896 21 45097 2923050 1.52 2968147 22 43480 2964038 1.45 3007518 23 41784 2937738 1.40 2979522 24 39793 2951650 1.33 2991443 25 39263 3006574 1.29 3045837 26 38378 2964330 1.28 3002708 27 37168 2989860 1.23 3027028 28 36030 3010437 1.18 3046467 29 34790 3002206 1.15 3036996 30 33518 2995618 1.11 3029136 31 33175 3021674 1.09 3054849 32 31901 3023140 1.04 3055041 33 31423 3054430 1.02 3085853 34 30126 3031489 0.98 3061615 35 29865 3046996 0.97 3076861 36 28465 3049641 0.92 3078106 37 27970 3079842 0.90 3107812 38 27425 3039364 0.89 3066789 39 26728 3047642 0.87 3074370 40 26229 3064600 0.85 3090829 41 25473 3063152 0.82 3088625 42 24666 3055918 0.80 3080584 43 25031 3074550 0.81 3099581 44 23915 3063146 0.77 3087061 45 23655 3088999 0.76 3112654 46 23369 3084125 0.75 3107494 47 23049 3063274 0.75 3086323 48 22741 3066586 0.74 3089327 49 22823 3072215 0.74 3095038 50 22371 3046767 0.73 3069138 51 22195 3041960 0.72 3064155 52 22063 3058109 0.72 3080172 53 21723 3048282 0.71 3070005 54 21358 3026774 0.70 3048132 55 21626 3018969 0.71 3040595 56 21309 3000750 0.71 3022059 57 21312 3006272 0.70 3027584 58 21517 2990363 0.71 3011880 59 21874 2964657 0.73 2986531 60 21624 2954662 0.73 2976286 61 22304 2939893 0.75 2962197 62 21800 2917415 0.74 2939215 63 22695 2907941 0.77 2930636 64 23218 2889345 0.80 2912563 65 22919 2856978 0.80 2879897 66 23201 2839229 0.81 2862430 67 23417 2836196 0.82 2859613 68 23443 2801007 0.83 2824450 69 23913 2777045 0.85 2800958 70 23613 2742923 0.85 2766536 71 24139 2726496 0.88 2750635 72 24119 2702982 0.88 2727101 73 24392 2672140 0.90 2696532 74 24680 2635668 0.93 2660348 75 24816 2620592 0.94 2645408 76 25147 2595376 0.96 2620523 77 25061 2570324 0.97 2595385 78 25241 2541919 0.98 2567160 79 25879 2522888 1.02 2548767 80 25572 2478764 1.02 2504336 81 26378 2466716 1.06 2493094 82 26123 2421200 1.07 2447323 83 26194 2395176 1.08 2421370 84 26594 2374726 1.11 2401320 85 26666 2347606 1.12 2374272 86 26843 2318391 1.14 2345234 87 26953 2290752 1.16 2317705 88 27237 2255155 1.19 2282392 89 27392 2224554 1.22 2251946 90 27588 2203437 1.24 2231025 91 27659 2167201 1.26 2194860 92 27433 2136768 1.27 2164201 93 27309 2116876 1.27 2144185 94 27340 2075531 1.30 2102871 95 27637 2046545 1.33 2074182 96 27569 2022545 1.34 2050114 97 28079 2009000 1.38 2037079 98 27372 1961390 1.38 1988762 99 27878 1932098 1.42 1959976 100 27667 1902919 1.43 1930586 101 27766 1876456 1.46 1904222 102 27548 1842915 1.47 1870463 103 27663 1823488 1.49 1851151 104 27810 1787415 1.53 1815225 105 27011 1763033 1.51 1790044 106 27616 1737170 1.56 1764786 107 27499 1702294 1.59 1729793 108 27383 1682950 1.60 1710333 109 27589 1655870 1.64 1683459 110 27296 1622419 1.65 1649715 111 27266 1598162 1.68 1625428 112 27392 1575638 1.71 1603030 113 26911 1543879 1.71 1570790 114 26761 1518315 1.73 1545076 115 26909 1489733 1.77 1516642 116 26485 1471426 1.77 1497911 117 26432 1453801 1.79 1480233 118 26311 1420137 1.82 1446448 119 25986 1397085 1.83 1423071 120 26138 1374228 1.87 1400366 121 25970 1358796 1.88 1384766 122 25860 1325679 1.91 1351539 123 25489 1305088 1.92 1330577 124 25345 1279730 1.94 1305075 125 24964 1260589 1.94 1285553 126 25099 1238955 1.99 1264054 127 25072 1218647 2.02 1243719 128 24625 1191527 2.02 1216152 129 24605 1174116 2.05 1198721 130 24161 1146035 2.06 1170196 131 23695 1127281 2.06 1150976 132 23709 1108007 2.09 1131716 133 23570 1088577 2.12 1112147 134 23380 1065438 2.15 1088818 135 23179 1046456 2.17 1069635 136 22694 1025752 2.16 1048446 137 22786 1004924 2.22 1027710 138 22220 986498 2.20 1008718 139 21877 971071 2.20 992948 140 21912 949287 2.26 971199 141 21824 933983 2.28 955807 142 21117 914126 2.26 935243 143 20972 894138 2.29 915110 144 21224 880006 2.36 901230 145 21297 862822 2.41 884119 146 20788 851319 2.38 872107 147 21219 840433 2.46 861652 148 21535 825608 2.54 847143 149 22284 813734 2.67 836018 150 25541 817946 3.03 843487 151 31603 746358 4.06 777961 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2337425 6154663 27.52 8492088 2 2239907 7803689 22.30 10043596 3 1630496 7692967 17.49 9323463 4 1512950 7312740 17.14 8825690 5 617274 8833321 6.53 9450595 6 571062 9591448 5.62 10162510 7 551684 10652456 4.92 11204140 8 485469 10558041 4.40 11043510 9 474600 10336817 4.39 10811417 10 447250 10252724 4.18 10699974 11 444285 10232211 4.16 10676496 12 401013 10201014 3.78 10602027 13 384052 10209917 3.63 10593969 14 375266 10172860 3.56 10548126 15 364469 10103621 3.48 10468090 16 357332 10059119 3.43 10416451 17 335830 9977731 3.26 10313561 18 307749 9946901 3.00 10254650 19 304190 9880903 2.99 10185093 20 314440 9896411 3.08 10210851 21 288483 9869547 2.84 10158030 22 281167 9805141 2.79 10086308 23 277740 9859165 2.74 10136905 24 258515 9842406 2.56 10100921 25 254800 9829179 2.53 10083979 26 252041 9845460 2.50 10097501 27 245150 9863840 2.43 10108990 28 237154 9919896 2.33 10157050 29 234378 9947853 2.30 10182231 30 224878 9944662 2.21 10169540 31 224286 9968087 2.20 10192373 32 215441 10031846 2.10 10247287 33 207101 10047198 2.02 10254299 34 203243 10073038 1.98 10276281 35 200316 10130280 1.94 10330596 36 191381 10116119 1.86 10307500 37 188269 10168886 1.82 10357155 38 183594 10205442 1.77 10389036 39 180592 10220729 1.74 10401321 40 174339 10276623 1.67 10450962 41 171633 10316139 1.64 10487772 42 162449 10334297 1.55 10496746 43 164619 10330970 1.57 10495589 44 159083 10385258 1.51 10544341 45 151534 10347709 1.44 10499243 46 149429 10344734 1.42 10494163 47 148541 10346745 1.42 10495286 48 141399 10398232 1.34 10539631 49 140237 10378459 1.33 10518696 50 136987 10366235 1.30 10503222 51 136101 10373237 1.30 10509338 52 132232 10371338 1.26 10503570 53 129386 10365640 1.23 10495026 54 125691 10320628 1.20 10446319 55 128516 10319417 1.23 10447933 56 123662 10236824 1.19 10360486 57 122658 10209993 1.19 10332651 58 122936 10154384 1.20 10277320 59 123602 10107677 1.21 10231279 60 119039 10068084 1.17 10187123 61 120494 10028398 1.19 10148892 62 120123 9979410 1.19 10099533 63 121356 9913997 1.21 10035353 64 120141 9847896 1.21 9968037 65 121855 9778935 1.23 9900790 66 118802 9694427 1.21 9813229 67 120962 9604889 1.24 9725851 68 120327 9534032 1.25 9654359 69 121136 9442426 1.27 9563562 70 119879 9361314 1.26 9481193 71 124858 9309785 1.32 9434643 72 121766 9219866 1.30 9341632 73 124010 9105927 1.34 9229937 74 124299 9019445 1.36 9143744 75 124105 8955327 1.37 9079432 76 125943 8861659 1.40 8987602 77 126391 8777280 1.42 8903671 78 125110 8670561 1.42 8795671 79 127486 8551762 1.47 8679248 80 126714 8466569 1.47 8593283 81 127010 8377327 1.49 8504337 82 127374 8285581 1.51 8412955 83 130461 8184677 1.57 8315138 84 128793 8095214 1.57 8224007 85 130207 7995182 1.60 8125389 86 131071 7912547 1.63 8043618 87 131543 7809746 1.66 7941289 88 132134 7701718 1.69 7833852 89 132854 7612213 1.72 7745067 90 133598 7516075 1.75 7649673 91 135351 7414217 1.79 7549568 92 134608 7321224 1.81 7455832 93 134195 7209672 1.83 7343867 94 133766 7106545 1.85 7240311 95 135590 7001597 1.90 7137187 96 131879 6911920 1.87 7043799 97 133276 6812087 1.92 6945363 98 132779 6728161 1.94 6860940 99 134042 6622734 1.98 6756776 100 133207 6520588 2.00 6653795 101 133387 6434705 2.03 6568092 102 131654 6316699 2.04 6448353 103 132383 6224148 2.08 6356531 104 131950 6135563 2.11 6267513 105 131678 6032152 2.14 6163830 106 131995 5936590 2.18 6068585 107 132119 5855120 2.21 5987239 108 130858 5749761 2.23 5880619 109 130221 5652376 2.25 5782597 110 129022 5566721 2.27 5695743 111 129892 5480536 2.32 5610428 112 128803 5394212 2.33 5523015 113 129086 5289371 2.38 5418457 114 126680 5189016 2.38 5315696 115 126236 5107889 2.41 5234125 116 126335 5030920 2.45 5157255 117 124867 4954320 2.46 5079187 118 124524 4877092 2.49 5001616 119 123711 4784388 2.52 4908099 120 123116 4706044 2.55 4829160 121 122826 4623367 2.59 4746193 122 121913 4559492 2.60 4681405 123 121686 4475114 2.65 4596800 124 120209 4387333 2.67 4507542 125 119977 4320454 2.70 4440431 126 117241 4240157 2.69 4357398 127 117846 4168928 2.75 4286774 128 116382 4092813 2.76 4209195 129 115257 4019082 2.79 4134339 130 113788 3947205 2.80 4060993 131 113287 3880929 2.84 3994216 132 112121 3807325 2.86 3919446 133 111049 3741031 2.88 3852080 134 110227 3673067 2.91 3783294 135 109342 3606339 2.94 3715681 136 108130 3539591 2.96 3647721 137 107176 3475033 2.99 3582209 138 105979 3411862 3.01 3517841 139 105950 3350631 3.07 3456581 140 103483 3289759 3.05 3393242 141 102726 3223722 3.09 3326448 142 102380 3171262 3.13 3273642 143 102068 3119824 3.17 3221892 144 102463 3057416 3.24 3159879 145 102146 3005623 3.29 3107769 146 101234 2970014 3.30 3071248 147 103220 2936448 3.40 3039668 148 104025 2891609 3.47 2995634 149 106282 2845635 3.60 2951917 150 108761 2833912 3.70 2942673 151 131233 2597717 4.81 2728950 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 96464 404064 19.27 500528 2 97957 779611 11.16 877568 3 87054 826294 9.53 913348 4 68270 603855 10.16 672125 5 34559 863386 3.85 897945 6 27905 489237 5.40 517142 7 27854 469465 5.60 497319 8 28336 459050 5.81 487386 9 27677 446194 5.84 473871 10 27677 431846 6.02 459523 11 28282 436724 6.08 465006 12 27253 430928 5.95 458181 13 25714 420560 5.76 446274 14 24987 419558 5.62 444545 15 24502 421711 5.49 446213 16 23691 407486 5.49 431177 17 23172 405492 5.41 428664 18 21764 408244 5.06 430008 19 21422 390786 5.20 412208 20 20857 387255 5.11 408112 21 20091 387402 4.93 407493 22 19380 376918 4.89 396298 23 19099 373937 4.86 393036 24 17891 368289 4.63 386180 25 17708 361330 4.67 379038 26 17253 357454 4.60 374707 27 16317 355389 4.39 371706 28 16263 344953 4.50 361216 29 15580 342680 4.35 358260 30 14833 335516 4.23 350349 31 14399 328049 4.20 342448 32 14280 325218 4.21 339498 33 13709 321143 4.09 334852 34 13069 311102 4.03 324171 35 12956 310189 4.01 323145 36 12231 305597 3.85 317828 37 12087 299671 3.88 311758 38 11762 296761 3.81 308523 39 11227 291787 3.71 303014 40 10633 283262 3.62 293895 41 10363 277810 3.60 288173 42 9961 276459 3.48 286420 43 9916 269754 3.55 279670 44 9575 267147 3.46 276722 45 9209 264496 3.36 273705 46 9011 255752 3.40 264763 47 8677 254890 3.29 263567 48 8490 249828 3.29 258318 49 7975 244551 3.16 252526 50 7882 241201 3.16 249083 51 7597 239259 3.08 246856 52 7506 233418 3.12 240924 53 7455 229434 3.15 236889 54 7019 224773 3.03 231792 55 6967 219837 3.07 226804 56 6598 218719 2.93 225317 57 6541 215892 2.94 222433 58 6379 209786 2.95 216165 59 6337 207940 2.96 214277 60 5987 206367 2.82 212354 61 5974 200548 2.89 206522 62 5872 196997 2.89 202869 63 5616 193106 2.83 198722 64 5556 188481 2.86 194037 65 5446 185732 2.85 191178 66 5310 184073 2.80 189383 67 5347 178934 2.90 184281 68 5255 176271 2.89 181526 69 4984 172383 2.81 177367 70 5000 168917 2.87 173917 71 4782 168522 2.76 173304 72 4805 164252 2.84 169057 73 4832 159410 2.94 164242 74 4645 157032 2.87 161677 75 4803 155023 3.01 159826 76 4395 150988 2.83 155383 77 4355 147153 2.87 151508 78 4377 146256 2.91 150633 79 4228 141786 2.90 146014 80 4234 140846 2.92 145080 81 4246 138537 2.97 142783 82 4094 134273 2.96 138367 83 3989 132663 2.92 136652 84 3953 130456 2.94 134409 85 3797 127241 2.90 131038 86 3756 125715 2.90 129471 87 3698 123466 2.91 127164 88 3585 120300 2.89 123885 89 3714 118299 3.04 122013 90 3512 115346 2.95 118858 91 3458 114466 2.93 117924 92 3389 110825 2.97 114214 93 3259 108969 2.90 112228 94 3148 107481 2.85 110629 95 3228 105605 2.97 108833 96 3259 105417 3.00 108676 97 3111 100921 2.99 104032 98 3087 99144 3.02 102231 99 3095 97381 3.08 100476 100 2953 94586 3.03 97539 101 2957 94040 3.05 96997 102 2802 92469 2.94 95271 103 2855 89959 3.08 92814 104 2661 88018 2.93 90679 105 2649 87364 2.94 90013 106 2567 84511 2.95 87078 107 2546 83671 2.95 86217 108 2502 81756 2.97 84258 109 2451 79628 2.99 82079 110 2447 79304 2.99 81751 111 2440 78364 3.02 80804 112 2466 75820 3.15 78286 113 2398 75327 3.09 77725 114 2327 73187 3.08 75514 115 2232 71832 3.01 74064 116 2231 71137 3.04 73368 117 2176 69571 3.03 71747 118 2125 67865 3.04 69990 119 2075 67533 2.98 69608 120 2077 66500 3.03 68577 121 2068 64654 3.10 66722 122 2009 63737 3.06 65746 123 1961 62889 3.02 64850 124 1984 61982 3.10 63966 125 1884 60680 3.01 62564 126 1901 59236 3.11 61137 127 1982 57517 3.33 59499 128 1862 56640 3.18 58502 129 1835 55735 3.19 57570 130 1716 54794 3.04 56510 131 1773 53473 3.21 55246 132 1742 52472 3.21 54214 133 1669 51389 3.15 53058 134 1674 50550 3.21 52224 135 1652 50059 3.19 51711 136 1629 48959 3.22 50588 137 1563 47824 3.16 49387 138 1656 47468 3.37 49124 139 1541 45746 3.26 47287 140 1497 44953 3.22 46450 141 1455 44524 3.16 45979 142 1392 43470 3.10 44862 143 1346 42738 3.05 44084 144 1359 42275 3.11 43634 145 1293 40785 3.07 42078 146 1371 40140 3.30 41511 147 1292 39934 3.13 41226 148 1291 38741 3.22 40032 149 1176 37957 3.01 39133 150 1000 35807 2.72 36807 151 819 29323 2.72 30142 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 179041 1735453 9.35 1914494 2 95978 426838 18.36 522816 3 69661 627556 9.99 697217 4 61817 566814 9.83 628631 5 25405 833544 2.96 858949 6 24352 1056115 2.25 1080467 7 22380 578374 3.73 600754 8 21583 562666 3.69 584249 9 20990 548061 3.69 569051 10 21205 519579 3.92 540784 11 20920 519329 3.87 540249 12 18571 523471 3.43 542042 13 18031 525105 3.32 543136 14 17617 506730 3.36 524347 15 16033 500154 3.11 516187 16 15681 495719 3.07 511400 17 14520 492580 2.86 507100 18 13779 482381 2.78 496160 19 13473 482082 2.72 495555 20 12946 463857 2.72 476803 21 12316 462050 2.60 474366 22 11581 458069 2.47 469650 23 11366 447556 2.48 458922 24 10629 441707 2.35 452336 25 10059 441316 2.23 451375 26 9620 426111 2.21 435731 27 9020 422456 2.09 431476 28 8645 420565 2.01 429210 29 8283 407685 1.99 415968 30 7803 399256 1.92 407059 31 7703 395882 1.91 403585 32 7116 388298 1.80 395414 33 6810 385758 1.73 392568 34 6329 375118 1.66 381447 35 6184 369655 1.65 375839 36 5748 363860 1.56 369608 37 5573 362786 1.51 368359 38 5132 351130 1.44 356262 39 4809 345965 1.37 350774 40 4509 343790 1.29 348299 41 4404 336996 1.29 341400 42 4055 329275 1.22 333330 43 3882 326853 1.17 330735 44 3778 319837 1.17 323615 45 3539 317210 1.10 320749 46 3280 313080 1.04 316360 47 3061 303359 1.00 306420 48 2825 300926 0.93 303751 49 2706 298625 0.90 301331 50 2551 289894 0.87 292445 51 2463 286219 0.85 288682 52 2483 285099 0.86 287582 53 2259 279792 0.80 282051 54 2032 271496 0.74 273528 55 1997 268478 0.74 270475 56 1907 263185 0.72 265092 57 1748 260313 0.67 262061 58 1794 255496 0.70 257290 59 1667 250997 0.66 252664 60 1692 245908 0.68 247600 61 1536 242403 0.63 243939 62 1461 237075 0.61 238536 63 1406 234570 0.60 235976 64 1376 230674 0.59 232050 65 1391 225555 0.61 226946 66 1312 219884 0.59 221196 67 1338 218894 0.61 220232 68 1319 215175 0.61 216494 69 1280 209103 0.61 210383 70 1254 204242 0.61 205496 71 1244 201489 0.61 202733 72 1154 197243 0.58 198397 73 1164 194663 0.59 195827 74 1179 189399 0.62 190578 75 1106 186472 0.59 187578 76 1126 183511 0.61 184637 77 1027 179353 0.57 180380 78 1056 175390 0.60 176446 79 1005 174033 0.57 175038 80 1101 168560 0.65 169661 81 1063 168177 0.63 169240 82 1042 163145 0.63 164187 83 972 159393 0.61 160365 84 997 156171 0.63 157168 85 901 154832 0.58 155733 86 961 151819 0.63 152780 87 878 148280 0.59 149158 88 916 145733 0.62 146649 89 920 141710 0.65 142630 90 885 139900 0.63 140785 91 849 137598 0.61 138447 92 772 134527 0.57 135299 93 845 131690 0.64 132535 94 809 129528 0.62 130337 95 787 126408 0.62 127195 96 862 124110 0.69 124972 97 790 123108 0.64 123898 98 747 119530 0.62 120277 99 780 116762 0.66 117542 100 751 114717 0.65 115468 101 724 112778 0.64 113502 102 675 110744 0.61 111419 103 742 109182 0.68 109924 104 707 106494 0.66 107201 105 698 103869 0.67 104567 106 690 102849 0.67 103539 107 641 99960 0.64 100601 108 671 98679 0.68 99350 109 706 97198 0.72 97904 110 651 95002 0.68 95653 111 642 93086 0.68 93728 112 634 92258 0.68 92892 113 614 89818 0.68 90432 114 659 88096 0.74 88755 115 566 86968 0.65 87534 116 626 85893 0.72 86519 117 630 85526 0.73 86156 118 601 82444 0.72 83045 119 616 80138 0.76 80754 120 637 78912 0.80 79549 121 576 78693 0.73 79269 122 565 75689 0.74 76254 123 481 75062 0.64 75543 124 540 73224 0.73 73764 125 524 72071 0.72 72595 126 527 70845 0.74 71372 127 556 69371 0.80 69927 128 508 68177 0.74 68685 129 533 67438 0.78 67971 130 504 65152 0.77 65656 131 495 63714 0.77 64209 132 501 62805 0.79 63306 133 436 62033 0.70 62469 134 440 60485 0.72 60925 135 450 59600 0.75 60050 136 424 58552 0.72 58976 137 459 57635 0.79 58094 138 464 56027 0.82 56491 139 438 55741 0.78 56179 140 458 53937 0.84 54395 141 409 53581 0.76 53990 142 414 52104 0.79 52518 143 399 51016 0.78 51415 144 415 50270 0.82 50685 145 388 48924 0.79 49312 146 394 48150 0.81 48544 147 345 47121 0.73 47466 148 374 46217 0.80 46591 149 325 45029 0.72 45354 150 305 43439 0.70 43744 151 230 34699 0.66 34929 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 493283 1316566 27.26 1809849 2 483857 1911172 20.20 2395029 3 375169 1650841 18.52 2026010 4 345047 1478606 18.92 1823653 5 147099 1975560 6.93 2122659 6 134720 2148390 5.90 2283110 7 131974 2429602 5.15 2561576 8 126736 2340164 5.14 2466900 9 122097 2228105 5.20 2350202 10 118496 2136209 5.26 2254705 11 115868 2078147 5.28 2194015 12 104787 2018864 4.93 2123651 13 98879 1995161 4.72 2094040 14 95156 1952279 4.65 2047435 15 91047 1911929 4.55 2002976 16 86320 1882019 4.39 1968339 17 81218 1837882 4.23 1919100 18 75575 1794387 4.04 1869962 19 73852 1763995 4.02 1837847 20 70934 1736745 3.92 1807679 21 65686 1696056 3.73 1761742 22 64109 1664105 3.71 1728214 23 63620 1649820 3.71 1713440 24 57216 1613204 3.43 1670420 25 54620 1581459 3.34 1636079 26 52574 1556749 3.27 1609323 27 51020 1534535 3.22 1585555 28 47768 1512640 3.06 1560408 29 47082 1488431 3.07 1535513 30 43508 1456227 2.90 1499735 31 42665 1428729 2.90 1471394 32 40231 1416383 2.76 1456614 33 38578 1388913 2.70 1427491 34 37427 1365953 2.67 1403380 35 37020 1347901 2.67 1384921 36 33709 1321738 2.49 1355447 37 32466 1306852 2.42 1339318 38 31199 1290010 2.36 1321209 39 30413 1266489 2.35 1296902 40 28588 1251772 2.23 1280360 41 27876 1231946 2.21 1259822 42 25577 1212266 2.07 1237843 43 26058 1188565 2.15 1214623 44 24718 1176545 2.06 1201263 45 23031 1152842 1.96 1175873 46 22695 1139037 1.95 1161732 47 22223 1120326 1.95 1142549 48 19891 1108733 1.76 1128624 49 19341 1089804 1.74 1109145 50 18751 1076078 1.71 1094829 51 18536 1061386 1.72 1079922 52 17372 1045013 1.64 1062385 53 16385 1032718 1.56 1049103 54 14963 1014245 1.45 1029208 55 15201 999708 1.50 1014909 56 13942 979251 1.40 993193 57 13899 962997 1.42 976896 58 13749 945642 1.43 959391 59 13709 931948 1.45 945657 60 12038 912753 1.30 924791 61 11718 901893 1.28 913611 62 11214 883699 1.25 894913 63 11140 868896 1.27 880036 64 10731 857245 1.24 867976 65 10937 841136 1.28 852073 66 9753 822801 1.17 832554 67 9786 804579 1.20 814365 68 9323 790313 1.17 799636 69 9164 772496 1.17 781660 70 8929 761584 1.16 770513 71 9851 748531 1.30 758382 72 8676 732070 1.17 740746 73 8598 715790 1.19 724388 74 8871 703149 1.25 712020 75 8355 692811 1.19 701166 76 8274 679737 1.20 688011 77 8522 667691 1.26 676213 78 7881 650650 1.20 658531 79 8167 638339 1.26 646506 80 7745 627831 1.22 635576 81 7401 617731 1.18 625132 82 7459 605916 1.22 613375 83 8004 595060 1.33 603064 84 6922 582380 1.17 589302 85 7172 572133 1.24 579305 86 7156 563739 1.25 570895 87 7002 553551 1.25 560553 88 6974 541755 1.27 548729 89 6916 533914 1.28 540830 90 6637 523489 1.25 530126 91 6455 514955 1.24 521410 92 6561 505636 1.28 512197 93 6196 493850 1.24 500046 94 6249 485691 1.27 491940 95 6540 475316 1.36 481856 96 5721 467218 1.21 472939 97 5935 459671 1.27 465606 98 5850 452552 1.28 458402 99 5888 442833 1.31 448721 100 5726 434738 1.30 440464 101 5716 428271 1.32 433987 102 5423 419133 1.28 424556 103 5281 411353 1.27 416634 104 5199 405861 1.26 411060 105 5107 396272 1.27 401379 106 5343 391426 1.35 396769 107 5593 383393 1.44 388986 108 4872 375220 1.28 380092 109 4765 367353 1.28 372118 110 4711 359997 1.29 364708 111 4689 354103 1.31 358792 112 4604 349665 1.30 354269 113 4932 342771 1.42 347703 114 4623 335726 1.36 340349 115 4548 329367 1.36 333915 116 4464 323080 1.36 327544 117 4350 318525 1.35 322875 118 4395 314275 1.38 318670 119 4405 305912 1.42 310317 120 4183 299549 1.38 303732 121 4227 294568 1.41 298795 122 4074 291395 1.38 295469 123 3979 284960 1.38 288939 124 3916 279686 1.38 283602 125 3883 275653 1.39 279536 126 3833 269893 1.40 273726 127 4037 265139 1.50 269176 128 3933 260495 1.49 264428 129 3528 256313 1.36 259841 130 3660 251156 1.44 254816 131 3586 247545 1.43 251131 132 3548 242671 1.44 246219 133 3451 238215 1.43 241666 134 3415 232937 1.44 236352 135 3334 228737 1.44 232071 136 3379 225958 1.47 229337 137 3360 221857 1.49 225217 138 3162 217693 1.43 220855 139 3159 213074 1.46 216233 140 3060 209343 1.44 212403 141 3115 204945 1.50 208060 142 2918 201607 1.43 204525 143 2996 199151 1.48 202147 144 2820 194452 1.43 197272 145 2854 191065 1.47 193919 146 2834 187333 1.49 190167 147 2778 183982 1.49 186760 148 2630 181038 1.43 183668 149 2647 175845 1.48 178492 150 2041 168363 1.20 170404 151 1692 136657 1.22 138349