../output/01.00-F-Ptuh-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_POC-57-TP2_S12_R1_001.fastq.gz and ../output/01.00-F-Ptuh-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_POC-57-TP2_S12_R2_001.fastq.gz
Data processed at 06:14:03 on 2025-05-01
Alignment Stats
Sequence pairs analysed in total
241592172
Paired-end alignments with a unique best hit
141174678
Pairs without alignments under any condition
71647653
Pairs that did not map uniquely
28769841
Genomic sequence context not extractable (edges of chromosomes)
232
Cytosine Methylation
Total C's analysed
5592250056
Methylated C's in CpG context
36067872
Methylated C's in CHG context
18974329
Methylated C's in CHH context
97064058
Methylated C's in Unknown context
17354214
Unmethylated C's in CpG context
864973038
Unmethylated C's in CHG context
1061369484
Unmethylated C's in CHH context
3513801275
Unmethylated C's in Unknown context
64120788
Percentage methylation (CpG context)
4.0%
Percentage methylation (CHG context)
1.8%
Percentage methylation (CHH context)
2.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
43695068
original top strand
CTOT
26967206
complementary to original top strand
CTOB
26927590
complementary to original bottom strand
OB
43584582
original bottom strand
Deduplication
Alignments analysed
141174446
Unique alignments
91172395
Duplicates removed
50002051
Duplicated alignments were found at 29739029 different positions
