Bowtie 2 seems to be working fine (tested command 'bowtie2 --version' [2.5.2]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/modules/uri_apps/software/SAMtools/1.14-GCC-11.2.0/bin/samtools' Reference genome folder provided is ../data/ (absolute path is '/scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/F-Ptuh/data/)' FastQ format assumed (by default) Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Each Bowtie 2 instance is going to be run with 8 threads. Please monitor performance closely and tune down if necessary! Input files to be analysed (in current folder '/scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/F-Ptuh/code'): ../output/01.00-F-Ptuh-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_POC-57-TP2_S12_R1_001.fastq.gz ../output/01.00-F-Ptuh-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_POC-57-TP2_S12_R2_001.fastq.gz Library was specified to be not strand-specific (non-directional), therefore alignments to all four possible bisulfite strands (OT, CTOT, OB and CTOB) will be reported Output will be written into the directory: /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/F-Ptuh/output/12-Ptuh-WGBS/bismark_cutadapt/ Setting parallelization to single-threaded (default) Summary of all aligner options: -q --score-min L,0,-1.0 -p 8 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Current working directory is: /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/F-Ptuh/code Now reading in and storing sequence information of the genome specified in: /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/F-Ptuh/data/ Single-core mode: setting pid to 1 Paired-end alignments will be performed ======================================= The provided filenames for paired-end alignments are ../output/01.00-F-Ptuh-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_POC-57-TP2_S12_R1_001.fastq.gz and ../output/01.00-F-Ptuh-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_POC-57-TP2_S12_R2_001.fastq.gz Input files are in FastQ format Writing a C -> T converted version of the input file trimmed_POC-57-TP2_S12_R1_001.fastq.gz to trimmed_POC-57-TP2_S12_R1_001.fastq.gz_C_to_T.fastq Writing a G -> A converted version of the input file trimmed_POC-57-TP2_S12_R1_001.fastq.gz to trimmed_POC-57-TP2_S12_R1_001.fastq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file trimmed_POC-57-TP2_S12_R1_001.fastq.gz (241592172 sequences in total) Writing a C -> T converted version of the input file trimmed_POC-57-TP2_S12_R2_001.fastq.gz to trimmed_POC-57-TP2_S12_R2_001.fastq.gz_C_to_T.fastq Writing a G -> A converted version of the input file trimmed_POC-57-TP2_S12_R2_001.fastq.gz to trimmed_POC-57-TP2_S12_R2_001.fastq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file trimmed_POC-57-TP2_S12_R2_001.fastq.gz (241592172 sequences in total) Input files are trimmed_POC-57-TP2_S12_R1_001.fastq.gz_C_to_T.fastq and trimmed_POC-57-TP2_S12_R1_001.fastq.gz_G_to_A.fastq and trimmed_POC-57-TP2_S12_R2_001.fastq.gz_C_to_T.fastq and trimmed_POC-57-TP2_S12_R2_001.fastq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/F-Ptuh/data/ with the specified options: -q --score-min L,0,-1.0 -p 8 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from trimmed_POC-57-TP2_S12_R1_001.fastq.gz_C_to_T.fastq and trimmed_POC-57-TP2_S12_R2_001.fastq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-1.0 -p 8 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: LH00260:131:22L7V3LT4:3:1101:2044:1014_1:N:0:CTTGGTAT+GNACTTGG/1 77 * 0 0 * * 0 0 TNTGGATAATAGAATTTATTTTTAGAATGTAAGTTTTTGATGTTTTAGATTATTATATAGTTATATGTGTTGTTATTTTGTATAG 9#IIIII9I9IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII YT:Z:UP LH00260:131:22L7V3LT4:3:1101:2044:1014_2:N:0:CTTGGTAT+GNACTTGG/2 141 * 0 0 * * 0 0 CTATACAAAATAACAACACATATAACTATATAATAATCTAAAACATCAAAAACTTACATTCTAAAAATAAATTCTATTATCCACA IIIIIIIIIIIIIIII-I9III9I9IIIIIIIIII9IIIIIII99I99IIIIIIIIII9IIIIIIIIIIIII9IIIIIIIIII9I YT:Z:UP Now starting a Bowtie 2 paired-end alignment for GAread1CTread2GAgenome (reading in sequences from trimmed_POC-57-TP2_S12_R1_001.fastq.gz_G_to_A.fastq and trimmed_POC-57-TP2_S12_R2_001.fastq.gz_C_to_T.fastq, with the options: -q --score-min L,0,-1.0 -p 8 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: LH00260:131:22L7V3LT4:3:1101:2044:1014_1:N:0:CTTGGTAT+GNACTTGG/1 77 * 0 0 * * 0 0 TNTAAATAATAAAATTTATTTTTAAAATATAAATCTTTAATATTTTAAATTATTATATAATTATATATATTATTATTTTATATAA 9#IIIII9I9IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII YT:Z:UP LH00260:131:22L7V3LT4:3:1101:2044:1014_2:N:0:CTTGGTAT+GNACTTGG/2 141 * 0 0 * * 0 0 TTATATAAAATAATAATATATATAATTATATAATAATTTAAAATATTAAAGATTTATATTTTAAAAATAAATTTTATTATTTATA IIIIIIIIIIIIIIII-I9III9I9IIIIIIIIII9IIIIIII99I99IIIIIIIIII9IIIIIIIIIIIII9IIIIIIIIII9I YT:Z:UP Now starting a Bowtie 2 paired-end alignment for GAread1CTread2CTgenome (reading in sequences from trimmed_POC-57-TP2_S12_R1_001.fastq.gz_G_to_A.fastq and trimmed_POC-57-TP2_S12_R2_001.fastq.gz_C_to_T.fastq, with the options: -q --score-min L,0,-1.0 -p 8 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw)) Found first alignment: LH00260:131:22L7V3LT4:3:1101:2044:1014_1:N:0:CTTGGTAT+GNACTTGG/1 77 * 0 0 * * 0 0 TNTAAATAATAAAATTTATTTTTAAAATATAAATCTTTAATATTTTAAATTATTATATAATTATATATATTATTATTTTATATAA 9#IIIII9I9IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII YT:Z:UP LH00260:131:22L7V3LT4:3:1101:2044:1014_2:N:0:CTTGGTAT+GNACTTGG/2 141 * 0 0 * * 0 0 TTATATAAAATAATAATATATATAATTATATAATAATTTAAAATATTAAAGATTTATATTTTAAAAATAAATTTTATTATTTATA IIIIIIIIIIIIIIII-I9III9I9IIIIIIIIII9IIIIIII99I99IIIIIIIIII9IIIIIIIIIIIII9IIIIIIIIII9I YT:Z:UP Now starting a Bowtie 2 paired-end alignment for CTread1GAread2GAgenome (reading in sequences from trimmed_POC-57-TP2_S12_R1_001.fastq.gz_C_to_T.fastq and trimmed_POC-57-TP2_S12_R2_001.fastq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-1.0 -p 8 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --nofw)) Found first alignment: LH00260:131:22L7V3LT4:3:1101:2044:1014_1:N:0:CTTGGTAT+GNACTTGG/1 83 Pocillopora_meandrina_HIv1___Sc0000037_GA_converted 1270107 3 31M4D54M = 1270107 -89 CTATACAAAATAACAACACATATAACTATATAATAATCTAAAACATCAAAAACTTACATTCTAAAAATAAATTCTATTATCCANA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII9I9IIIII#9 AS:i:-30 XS:i:-62 XN:i:0 XM:i:3 XO:i:1 XG:i:4 NM:i:7 MD:Z:22A8^AAAA15T36A1 YS:i:-35 YT:Z:CP LH00260:131:22L7V3LT4:3:1101:2044:1014_2:N:0:CTTGGTAT+GNACTTGG/2 163 Pocillopora_meandrina_HIv1___Sc0000037_GA_converted 1270107 3 31M4D54M = 1270107 89 CTATACAAAATAACAACACATATAACTATATAATAATCTAAAACATCAAAAACTTACATTCTAAAAATAAATTCTATTATCCACA IIIIIIIIIIIIIIII-I9III9I9IIIIIIIIII9IIIIIII99I99IIIIIIIIII9IIIIIIIIIIIII9IIIIIIIIII9I AS:i:-35 XS:i:-67 XN:i:0 XM:i:3 XO:i:1 XG:i:4 NM:i:7 MD:Z:22A8^AAAA15T36A1 YS:i:-30 YT:Z:CP >>> Writing bisulfite mapping results to trimmed_POC-57-TP2_S12_pe.bam <<< Reading in the sequence files ../output/01.00-F-Ptuh-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_POC-57-TP2_S12_R1_001.fastq.gz and ../output/01.00-F-Ptuh-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_POC-57-TP2_S12_R2_001.fastq.gz Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1101:41688:8144_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000010 1 Processed 1000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1105:8825:9447_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000343 3 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1106:28174:25990_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Processed 2000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1107:25989:28315_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000272 51955 Processed 3000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1113:5548:8564_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000288 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1113:5556:8578_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000288 1 Processed 4000000 sequence pairs so far Processed 5000000 sequence pairs so far Processed 6000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1121:30003:13551_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000205 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1122:12669:27979_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000811 2 Processed 7000000 sequence pairs so far Processed 8000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1128:43039:25332_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000010 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1128:28271:26998_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 1 Processed 9000000 sequence pairs so far Processed 10000000 sequence pairs so far Processed 11000000 sequence pairs so far Processed 12000000 sequence pairs so far Processed 13000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1145:51253:14167_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000004 14584367 Processed 14000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1148:24646:11842_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 1 Processed 15000000 sequence pairs so far Processed 16000000 sequence pairs so far Processed 17000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1158:15809:2653_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000057 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1158:15801:2667_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000057 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1158:15153:6197_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001273 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1159:4763:16927_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000288 1 Processed 18000000 sequence pairs so far Processed 19000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1163:11763:23020_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000019 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1164:9553:3563_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 3 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1164:50104:4810_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000272 2 Processed 20000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1168:26021:21928_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Processed 21000000 sequence pairs so far Processed 22000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1174:48696:4502_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000004 14584379 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1175:31063:7486_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000003 19417365 Processed 23000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1176:2732:10441_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000019 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1178:13875:14630_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Processed 24000000 sequence pairs so far Processed 25000000 sequence pairs so far Processed 26000000 sequence pairs so far Processed 27000000 sequence pairs so far Processed 28000000 sequence pairs so far Processed 29000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1195:12499:17067_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1195:12491:17081_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1195:9950:26578_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001273 1 Processed 30000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1197:29647:14616_1:N:0:CCTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 1 Processed 31000000 sequence pairs so far Processed 32000000 sequence pairs so far Processed 33000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1211:42262:15022_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000205 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1211:42270:15036_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000205 1 Processed 34000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1213:46932:21255_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000005 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1213:46940:21269_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000005 1 Processed 35000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1217:17387:29450_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000272 3 Processed 36000000 sequence pairs so far Processed 37000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1224:44908:10918_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000003 19417364 Processed 38000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1227:42278:4908_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1228:12499:1490_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000621 1 Processed 39000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1229:26167:2149_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000272 2 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1229:43549:23160_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000288 2 Processed 40000000 sequence pairs so far Processed 41000000 sequence pairs so far Processed 42000000 sequence pairs so far Processed 43000000 sequence pairs so far Processed 44000000 sequence pairs so far Processed 45000000 sequence pairs so far Processed 46000000 sequence pairs so far Processed 47000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1255:28659:20751_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000621 3 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1255:16092:27909_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000004 14584367 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1255:16100:27923_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000004 14584367 Processed 48000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1257:1696:17809_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0001170 1 Processed 49000000 sequence pairs so far Processed 50000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1266:21303:7598_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000272 3 Processed 51000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1269:14028:6995_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000083 65166 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1269:14045:6995_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000083 65166 Processed 52000000 sequence pairs so far Processed 53000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1274:19369:25205_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000016 9288053 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1275:49392:11114_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000021 2 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1275:2772:14433_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000021 95640 Processed 54000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1278:26507:13803_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000621 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1278:26482:13817_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000621 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1278:26499:13817_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000621 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1278:26515:13817_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000621 1 Processed 55000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1282:4366:7304_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 1 Processed 56000000 sequence pairs so far Processed 57000000 sequence pairs so far Processed 58000000 sequence pairs so far Processed 59000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1293:27364:15232_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1294:9100:22530_1:N:0:CTTGGTAT+AGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1295:22242:6421_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000003 19417344 Processed 60000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1296:21077:28693_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000272 2 Processed 61000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1301:19466:29520_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000621 3 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1302:28344:4124_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000488 1 Processed 62000000 sequence pairs so far Processed 63000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1309:4561:8564_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000012 10024543 Processed 64000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1312:20017:7107_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1312:20033:7107_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 1 Processed 65000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1315:38961:8438_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000037 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1315:38969:8452_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000037 1 Processed 66000000 sequence pairs so far Processed 67000000 sequence pairs so far Processed 68000000 sequence pairs so far Processed 69000000 sequence pairs so far Processed 70000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1330:3153:28651_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000003 19417344 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1333:4989:5300_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1333:5006:5300_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Processed 71000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1333:4415:28231_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000030 1 Processed 72000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1338:35861:12458_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 1 Processed 73000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1341:12119:6799_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1341:6770:27096_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000055 121482 Processed 74000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1345:19847:16226_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Processed 75000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1347:47239:4194_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000019 2 Processed 76000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1349:32697:29422_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000030 1 Processed 77000000 sequence pairs so far Processed 78000000 sequence pairs so far Processed 79000000 sequence pairs so far Processed 80000000 sequence pairs so far Processed 81000000 sequence pairs so far Processed 82000000 sequence pairs so far Processed 83000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1374:44908:2989_1:N:0:CTTGGTCT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000288 2 Processed 84000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1378:31872:16311_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Processed 85000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1379:4561:24841_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1380:37933:8060_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000482 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1381:21425:15876_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000005 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1381:34057:19784_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000046 755307 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1381:34073:19784_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000046 755307 Processed 86000000 sequence pairs so far Processed 87000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1385:35060:25135_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000621 3 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1387:24370:15932_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000527 44116 Processed 88000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1389:46333:18510_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000272 3 Processed 89000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1393:31046:14602_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 1 Processed 90000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1396:17047:11660_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000023 5766974 Processed 91000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1401:41348:1476_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000272 3 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1402:33102:25528_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000057 3 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1402:33110:25542_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000057 3 Processed 92000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1404:22574:15204_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1404:22590:15204_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 1 Processed 93000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1407:33701:12416_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000527 44094 Processed 94000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1411:4909:5160_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Processed 95000000 sequence pairs so far Processed 96000000 sequence pairs so far Processed 97000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1421:15169:17627_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000272 3 Processed 98000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1422:4739:18454_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000019 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1422:16812:28707_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0001122 29030 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1423:29145:23496_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000788 2 Processed 99000000 sequence pairs so far Processed 100000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1428:46041:4558_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000010 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1428:30739:7037_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000083 65168 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1428:30731:7051_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000083 65168 Processed 101000000 sequence pairs so far Processed 102000000 sequence pairs so far Processed 103000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1438:10775:19126_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1440:47506:4992_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000010 1 Processed 104000000 sequence pairs so far Processed 105000000 sequence pairs so far Processed 106000000 sequence pairs so far Processed 107000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1451:34478:21297_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000061 75318 Processed 108000000 sequence pairs so far Processed 109000000 sequence pairs so far Processed 110000000 sequence pairs so far Processed 111000000 sequence pairs so far Processed 112000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1466:34558:29226_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1467:11196:8116_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000168 56572 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1467:11204:8130_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000168 56572 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1468:23763:26116_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000034 3122679 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1468:23772:26130_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000034 3122679 Processed 113000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1470:9019:4488_1:N:0:ATTGGTAT+GGACTCGG Pocillopora_meandrina_HIv1___xfSc0000428 1 Processed 114000000 sequence pairs so far Processed 115000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1475:28255:28231_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000343 3 Processed 116000000 sequence pairs so far Processed 117000000 sequence pairs so far Processed 118000000 sequence pairs so far Processed 119000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1488:44431:9811_1:N:0:TTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1490:8955:7318_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000019 1 Processed 120000000 sequence pairs so far Processed 121000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1495:15776:17977_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:1495:34995:23146_1:N:0:CTTGGTAT+AGACTTGG Pocillopora_meandrina_HIv1___Sc0000016 9288054 Processed 122000000 sequence pairs so far Processed 123000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2105:15153:5553_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 1 Processed 124000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2109:50800:1616_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000010 1 Processed 125000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2111:46130:6813_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000288 1 Processed 126000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2113:22453:29590_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2115:45807:2779_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 1 Processed 127000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2120:22113:12865_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Processed 128000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2121:35853:10315_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000005 1 Processed 129000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2125:35076:16563_1:N:0:CTTGATAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000527 44142 Processed 130000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2127:43120:18664_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000885 36342 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2128:9027:13607_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000010 2 Processed 131000000 sequence pairs so far Processed 132000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2137:5774:14083_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000005 1 Processed 133000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2140:32576:18622_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2140:32584:18636_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Processed 134000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2142:47223:13215_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000010 2 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2142:30893:20247_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2143:11892:3998_1:N:0:CTTGGTAT+AGACTTGG Pocillopora_meandrina_HIv1___xfSc0000205 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2143:11884:4012_1:N:0:CTTGGTAT+AGACTTGG Pocillopora_meandrina_HIv1___xfSc0000205 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2143:11876:4026_1:N:0:CTTGGTAC+AGACTTGG Pocillopora_meandrina_HIv1___xfSc0000205 1 Processed 135000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2145:10759:23693_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000032 2 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2146:38111:20835_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000488 1 Processed 136000000 sequence pairs so far Processed 137000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2153:29023:24743_1:N:0:CTTGGTAT+AGACTTGG Pocillopora_meandrina_HIv1___xfSc0000083 65167 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2153:29031:24757_1:N:0:CTTGGTAT+AGACTTGG Pocillopora_meandrina_HIv1___xfSc0000083 65167 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2153:29023:24771_1:N:0:CTTGGTAT+AGACTTGG Pocillopora_meandrina_HIv1___xfSc0000083 65167 Processed 138000000 sequence pairs so far Processed 139000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2159:10800:3199_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000817 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2160:27551:4292_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000272 3 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2160:27567:4292_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000272 3 Processed 140000000 sequence pairs so far Processed 141000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2164:6317:13901_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000019 1 Processed 142000000 sequence pairs so far Processed 143000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2171:12475:11758_1:N:0:CTTGGTAT+AGACTTGG Pocillopora_meandrina_HIv1___xfSc0001122 2 Processed 144000000 sequence pairs so far Processed 145000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2176:7951:5188_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 1 Processed 146000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2179:6996:4600_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000023 5766974 Processed 147000000 sequence pairs so far Processed 148000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2184:32511:22320_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001281 3 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2184:32527:22320_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001281 3 Processed 149000000 sequence pairs so far Processed 150000000 sequence pairs so far Processed 151000000 sequence pairs so far Processed 152000000 sequence pairs so far Processed 153000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2201:21401:20205_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2202:34542:8550_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000527 44089 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2203:26701:25402_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000005 1 Processed 154000000 sequence pairs so far Processed 155000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2208:40765:21479_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000004 14584367 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2209:22800:9685_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000488 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2209:22817:9685_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000488 1 Processed 156000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2213:21401:7738_1:N:0:CTTGGTAT+AGACTTGG Pocillopora_meandrina_HIv1___xfSc0000264 2 Processed 157000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2215:45337:22558_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 2 Processed 158000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2219:26118:20415_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000817 2 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2220:46381:13719_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 1 Processed 159000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2222:26013:16311_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000343 3 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2223:13689:4250_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 3466 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2223:13681:4264_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 3466 Processed 160000000 sequence pairs so far Processed 161000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2231:45556:7332_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000019 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2231:27567:9335_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Processed 162000000 sequence pairs so far Processed 163000000 sequence pairs so far Processed 164000000 sequence pairs so far Processed 165000000 sequence pairs so far Processed 166000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2245:39212:4866_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Processed 167000000 sequence pairs so far Processed 168000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2253:22582:12865_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Processed 169000000 sequence pairs so far Processed 170000000 sequence pairs so far Processed 171000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2263:41348:1280_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000019 2 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2263:41340:1294_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000019 2 Processed 172000000 sequence pairs so far Processed 173000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2269:5637:7962_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2269:5629:7976_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2269:5645:7976_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2269:5661:7976_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2269:5653:7990_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Processed 174000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2271:46470:5581_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000019 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2271:43031:9181_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000272 3 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2271:19248:13845_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000974 1 Processed 175000000 sequence pairs so far Processed 176000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2279:9189:4446_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 3466 Processed 177000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2283:3687:22628_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Processed 178000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2286:39632:10049_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000083 65166 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2286:39624:10063_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000083 65166 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2286:39640:10063_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000083 65166 Processed 179000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2288:45540:8788_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0001170 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2290:30051:4054_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000083 65166 Processed 180000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2291:6737:6981_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Processed 181000000 sequence pairs so far Processed 182000000 sequence pairs so far Processed 183000000 sequence pairs so far Processed 184000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2308:48768:29674_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000205 1 Processed 185000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2311:51115:14265_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000343 3 Processed 186000000 sequence pairs so far Processed 187000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2319:2343:6659_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000010 2 Processed 188000000 sequence pairs so far Processed 189000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2326:40790:16703_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000974 1 Processed 190000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2329:10589:17907_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000004 14584379 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2330:32794:2695_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 2 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2330:48251:15274_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 1 Processed 191000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2333:45143:15918_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000272 3 Processed 192000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2335:21716:21367_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2336:6292:19826_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 1 Processed 193000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2339:30423:17109_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000004 14584367 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2339:3411:24505_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000005 1 Processed 194000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2341:50630:2443_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2342:3776:6225_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000288 1 Processed 195000000 sequence pairs so far Processed 196000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2348:17209:18524_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000288 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2350:14765:15358_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000061 75280 Processed 197000000 sequence pairs so far Processed 198000000 sequence pairs so far Processed 199000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2360:38694:4138_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2360:38710:4138_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 2 Processed 200000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2360:33507:14714_1:N:0:CTTGGTAT+AGACTTGG Pocillopora_meandrina_HIv1___xfSc0000205 1 Processed 201000000 sequence pairs so far Processed 202000000 sequence pairs so far Processed 203000000 sequence pairs so far Processed 204000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2374:7822:7962_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000205 1 Processed 205000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2378:32859:5749_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000704 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2378:49909:14055_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000527 44095 Processed 206000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2383:45960:6743_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 1 Processed 207000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2386:22461:6435_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000083 65198 Processed 208000000 sequence pairs so far Processed 209000000 sequence pairs so far Processed 210000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2395:17694:27125_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000527 44091 Processed 211000000 sequence pairs so far Processed 212000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2404:8874:4292_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000272 3 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2405:44989:2345_1:N:0:CTTGGTAT+AGACTTGG Pocillopora_meandrina_HIv1___Sc0000004 14584367 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2405:50055:7163_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000037 3 Processed 213000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2406:47393:19392_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2408:30901:6029_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000788 2 Processed 214000000 sequence pairs so far Processed 215000000 sequence pairs so far Processed 216000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2418:34793:6967_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 1 Processed 217000000 sequence pairs so far Processed 218000000 sequence pairs so far Processed 219000000 sequence pairs so far Processed 220000000 sequence pairs so far Processed 221000000 sequence pairs so far Processed 222000000 sequence pairs so far Processed 223000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2441:13915:26242_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000004 14584367 Processed 224000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2445:30779:28904_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000272 3 Processed 225000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2448:34227:20639_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 1 Processed 226000000 sequence pairs so far Processed 227000000 sequence pairs so far Processed 228000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2459:9723:1420_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000005 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2459:9740:1420_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000005 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2459:9732:1434_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000005 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2459:9748:1434_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000005 1 Processed 229000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2460:20421:25654_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2462:33474:19420_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0001179 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2462:33466:19434_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0001179 1 Processed 230000000 sequence pairs so far Processed 231000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2467:30585:1392_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 1 Processed 232000000 sequence pairs so far 241592172 reads; of these: 241592172 (100.00%) were paired; of these: 196623976 (81.39%) aligned concordantly 0 times 23302775 (9.65%) aligned concordantly exactly 1 time 21665421 (8.97%) aligned concordantly >1 times 18.61% overall alignment rate Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2469:10646:12066_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000272 2 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2471:31386:22558_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2471:31378:22572_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xpSc0001355 1 Processed 233000000 sequence pairs so far Processed 234000000 sequence pairs so far 241592172 reads; of these: 241592172 (100.00%) were paired; of these: 172448972 (71.38%) aligned concordantly 0 times 35649643 (14.76%) aligned concordantly exactly 1 time 33493557 (13.86%) aligned concordantly >1 times 28.62% overall alignment rate 241592172 reads; of these: 241592172 (100.00%) were paired; of these: 172545954 (71.42%) aligned concordantly 0 times 35526943 (14.71%) aligned concordantly exactly 1 time 33519275 (13.87%) aligned concordantly >1 times 28.58% overall alignment rate Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2477:8995:16100_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000205 1 Processed 235000000 sequence pairs so far Processed 236000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2483:12321:21157_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000428 2 Processed 237000000 sequence pairs so far Processed 238000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2489:6244:24729_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000205 1 Processed 239000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2490:44739:4040_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000704 1 Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2490:42165:9839_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___xfSc0000083 65168 Processed 240000000 sequence pairs so far Chromosomal sequence could not be extracted for LH00260:131:22L7V3LT4:3:2495:11172:20065_1:N:0:CTTGGTAT+GGACTTGG Pocillopora_meandrina_HIv1___Sc0000066 66534 Processed 241000000 sequence pairs so far 241592172 reads; of these: 241592172 (100.00%) were paired; of these: 196675214 (81.41%) aligned concordantly 0 times 23242312 (9.62%) aligned concordantly exactly 1 time 21674646 (8.97%) aligned concordantly >1 times 18.59% overall alignment rate Processed 241592172 sequences in total Successfully deleted the temporary files trimmed_POC-57-TP2_S12_R1_001.fastq.gz_C_to_T.fastq, trimmed_POC-57-TP2_S12_R1_001.fastq.gz_G_to_A.fastq, trimmed_POC-57-TP2_S12_R2_001.fastq.gz_C_to_T.fastq and trimmed_POC-57-TP2_S12_R2_001.fastq.gz_G_to_A.fastq Final Alignment report ====================== Sequence pairs analysed in total: 241592172 Final Cytosine Methylation Report ================================= Total number of C's analysed: 5592250056 Total methylated C's in CpG context: 36067872 Total methylated C's in CHG context: 18974329 Total methylated C's in CHH context: 97064058 Total methylated C's in Unknown context: 17354214 Total unmethylated C's in CpG context: 864973038 Total unmethylated C's in CHG context: 1061369484 Total unmethylated C's in CHH context: 3513801275 Total unmethylated C's in Unknown context: 64120788 C methylated in CpG context: 4.0% C methylated in CHG context: 1.8% C methylated in CHH context: 2.7% C methylated in unknown context (CN or CHN): 21.3% Bismark completed in 0d 18h 26m 20s ==================== Bismark run complete ====================