CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 251243 1380337 15.40 1631580 2 246836 2357601 9.48 2604437 3 190896 2659252 6.70 2850148 4 159607 2059544 7.19 2219151 5 87275 2595276 3.25 2682551 6 71184 1712074 3.99 1783258 7 66093 1637233 3.88 1703326 8 76738 1691017 4.34 1767755 9 70559 1672991 4.05 1743550 10 70482 1655180 4.08 1725662 11 98472 1674456 5.55 1772928 12 123777 1710414 6.75 1834191 13 90584 1719196 5.01 1809780 14 65262 1741994 3.61 1807256 15 65158 1787715 3.52 1852873 16 67950 1749973 3.74 1817923 17 62526 1760790 3.43 1823316 18 61498 1843650 3.23 1905148 19 60815 1791169 3.28 1851984 20 63664 1799987 3.42 1863651 21 62835 1826450 3.33 1889285 22 61385 1830545 3.24 1891930 23 60418 1841349 3.18 1901767 24 59218 1862089 3.08 1921307 25 60141 1846384 3.15 1906525 26 60918 1853121 3.18 1914039 27 58942 1874997 3.05 1933939 28 59588 1855806 3.11 1915394 29 59473 1858354 3.10 1917827 30 57946 1867485 3.01 1925431 31 58164 1858470 3.03 1916634 32 58264 1869986 3.02 1928250 33 57541 1883179 2.96 1940720 34 57411 1874580 2.97 1931991 35 57668 1889193 2.96 1946861 36 57031 1908801 2.90 1965832 37 57350 1894841 2.94 1952191 38 57850 1900268 2.95 1958118 39 56638 1910250 2.88 1966888 40 55983 1890751 2.88 1946734 41 56814 1888588 2.92 1945402 42 55413 1900148 2.83 1955561 43 55973 1881431 2.89 1937404 44 55586 1898985 2.84 1954571 45 55677 1909947 2.83 1965624 46 55561 1893523 2.85 1949084 47 56273 1906413 2.87 1962686 48 55636 1909158 2.83 1964794 49 54880 1890438 2.82 1945318 50 55403 1888910 2.85 1944313 51 54457 1898642 2.79 1953099 52 55106 1877322 2.85 1932428 53 54745 1872212 2.84 1926957 54 54430 1876664 2.82 1931094 55 54175 1859240 2.83 1913415 56 54250 1859661 2.83 1913911 57 54209 1865122 2.82 1919331 58 53601 1839242 2.83 1892843 59 54481 1844821 2.87 1899302 60 52882 1847573 2.78 1900455 61 53515 1819540 2.86 1873055 62 53931 1816570 2.88 1870501 63 53113 1808725 2.85 1861838 64 53517 1783633 2.91 1837150 65 52841 1768903 2.90 1821744 66 52406 1773098 2.87 1825504 67 52823 1750826 2.93 1803649 68 52689 1738818 2.94 1791507 69 52246 1731766 2.93 1784012 70 52380 1712827 2.97 1765207 71 51742 1702705 2.95 1754447 72 50974 1691598 2.93 1742572 73 51771 1660918 3.02 1712689 74 51380 1651045 3.02 1702425 75 50722 1641723 3.00 1692445 76 50266 1616066 3.02 1666332 77 50230 1600823 3.04 1651053 78 49578 1592837 3.02 1642415 79 49414 1566227 3.06 1615641 80 49456 1555591 3.08 1605047 81 48841 1541041 3.07 1589882 82 49030 1515788 3.13 1564818 83 48046 1499499 3.10 1547545 84 48099 1488358 3.13 1536457 85 48170 1461210 3.19 1509380 86 47573 1446616 3.18 1494189 87 46618 1430400 3.16 1477018 88 46321 1408540 3.18 1454861 89 46385 1394411 3.22 1440796 90 45698 1373432 3.22 1419130 91 45194 1347401 3.25 1392595 92 45400 1328130 3.31 1373530 93 44213 1311719 3.26 1355932 94 43945 1291061 3.29 1335006 95 43811 1275027 3.32 1318838 96 42741 1260733 3.28 1303474 97 42716 1229462 3.36 1272178 98 42300 1213295 3.37 1255595 99 41460 1198984 3.34 1240444 100 41108 1170766 3.39 1211874 101 41032 1154844 3.43 1195876 102 40239 1136364 3.42 1176603 103 39363 1110221 3.42 1149584 104 39444 1093883 3.48 1133327 105 39152 1079727 3.50 1118879 106 38327 1055199 3.50 1093526 107 38143 1042180 3.53 1080323 108 37274 1023015 3.52 1060289 109 36445 1001582 3.51 1038027 110 36511 986355 3.57 1022866 111 36011 971348 3.57 1007359 112 35519 946328 3.62 981847 113 35022 931563 3.62 966585 114 34219 912438 3.61 946657 115 33622 891018 3.64 924640 116 33806 877943 3.71 911749 117 33230 863094 3.71 896324 118 32774 842197 3.75 874971 119 32008 826190 3.73 858198 120 31562 815859 3.72 847421 121 31349 792911 3.80 824260 122 30756 777257 3.81 808013 123 30281 765355 3.81 795636 124 29803 744819 3.85 774622 125 29346 730043 3.86 759389 126 28584 713236 3.85 741820 127 28244 696094 3.90 724338 128 28063 683744 3.94 711807 129 27397 670117 3.93 697514 130 26836 652753 3.95 679589 131 26501 638300 3.99 664801 132 25949 625960 3.98 651909 133 25713 609504 4.05 635217 134 25229 597114 4.05 622343 135 24516 586044 4.02 610560 136 24475 568214 4.13 592689 137 24247 556262 4.18 580509 138 23231 544657 4.09 567888 139 22951 529105 4.16 552056 140 22257 517695 4.12 539952 141 21251 506152 4.03 527403 142 20553 492894 4.00 513447 143 20272 481077 4.04 501349 144 19799 471538 4.03 491337 145 19395 457397 4.07 476792 146 18950 449379 4.05 468329 147 19479 443913 4.20 463392 148 19787 433012 4.37 452799 149 20611 424580 4.63 445191 150 18716 418683 4.28 437399 151 17817 386512 4.41 404329 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 401572 4088932 8.94 4490504 2 242675 1471060 14.16 1713735 3 183068 2128509 7.92 2311577 4 157033 1854598 7.81 2011631 5 70220 2417459 2.82 2487679 6 51369 3059571 1.65 3110940 7 49216 1950174 2.46 1999390 8 52039 1922374 2.64 1974413 9 42475 1927125 2.16 1969600 10 73409 1881170 3.76 1954579 11 83682 1922129 4.17 2005811 12 42982 1987732 2.12 2030714 13 37476 2036579 1.81 2074055 14 45658 2024342 2.21 2070000 15 37233 2015275 1.81 2052508 16 50524 2007500 2.45 2058024 17 32243 2072812 1.53 2105055 18 29111 2074781 1.38 2103892 19 28267 2084736 1.34 2113003 20 30219 2042834 1.46 2073053 21 28121 2075442 1.34 2103563 22 26143 2125829 1.21 2151972 23 24849 2114848 1.16 2139697 24 24058 2107003 1.13 2131061 25 24028 2124256 1.12 2148284 26 23415 2095220 1.11 2118635 27 23090 2116365 1.08 2139455 28 22884 2127594 1.06 2150478 29 22151 2119863 1.03 2142014 30 21842 2116826 1.02 2138668 31 21556 2137164 1.00 2158720 32 21014 2134919 0.97 2155933 33 20913 2154601 0.96 2175514 34 20495 2143869 0.95 2164364 35 20514 2150779 0.94 2171293 36 20188 2163460 0.92 2183648 37 20023 2178098 0.91 2198121 38 19567 2149557 0.90 2169124 39 19164 2163576 0.88 2182740 40 18821 2169055 0.86 2187876 41 18869 2167659 0.86 2186528 42 18212 2163503 0.83 2181715 43 18807 2176730 0.86 2195537 44 18078 2164345 0.83 2182423 45 18117 2185429 0.82 2203546 46 18323 2180302 0.83 2198625 47 17944 2161600 0.82 2179544 48 17990 2172508 0.82 2190498 49 18030 2171978 0.82 2190008 50 18084 2151042 0.83 2169126 51 17854 2155761 0.82 2173615 52 17885 2162600 0.82 2180485 53 18028 2150188 0.83 2168216 54 17935 2138747 0.83 2156682 55 18080 2140317 0.84 2158397 56 18025 2125148 0.84 2143173 57 18184 2129340 0.85 2147524 58 18253 2116902 0.85 2135155 59 18114 2097189 0.86 2115303 60 18729 2095607 0.89 2114336 61 18981 2088148 0.90 2107129 62 18961 2059867 0.91 2078828 63 19549 2062654 0.94 2082203 64 19591 2051950 0.95 2071541 65 19234 2028130 0.94 2047364 66 19739 2017966 0.97 2037705 67 19832 2012779 0.98 2032611 68 19942 1989578 0.99 2009520 69 20223 1980143 1.01 2000366 70 19994 1954812 1.01 1974806 71 20583 1941161 1.05 1961744 72 20557 1929226 1.05 1949783 73 20851 1910382 1.08 1931233 74 20660 1878233 1.09 1898893 75 20957 1872999 1.11 1893956 76 20834 1854044 1.11 1874878 77 20908 1834001 1.13 1854909 78 21401 1812401 1.17 1833802 79 21632 1799789 1.19 1821421 80 21574 1765095 1.21 1786669 81 21803 1765485 1.22 1787288 82 21898 1732473 1.25 1754371 83 21686 1711255 1.25 1732941 84 21741 1694758 1.27 1716499 85 22227 1679172 1.31 1701399 86 22000 1651171 1.31 1673171 87 22365 1636689 1.35 1659054 88 22238 1608428 1.36 1630666 89 22553 1585296 1.40 1607849 90 22351 1566502 1.41 1588853 91 22642 1541396 1.45 1564038 92 22609 1517135 1.47 1539744 93 22524 1501390 1.48 1523914 94 22412 1472599 1.50 1495011 95 22440 1448742 1.53 1471182 96 22341 1432192 1.54 1454533 97 22420 1412174 1.56 1434594 98 22489 1383501 1.60 1405990 99 22516 1362239 1.63 1384755 100 22415 1336200 1.65 1358615 101 22212 1314378 1.66 1336590 102 21956 1291564 1.67 1313520 103 22262 1274951 1.72 1297213 104 22258 1246274 1.75 1268532 105 22195 1230848 1.77 1253043 106 22027 1205560 1.79 1227587 107 21625 1182273 1.80 1203898 108 21485 1164176 1.81 1185661 109 21635 1142792 1.86 1164427 110 20810 1116055 1.83 1136865 111 21376 1098892 1.91 1120268 112 21232 1075905 1.94 1097137 113 20934 1055545 1.94 1076479 114 20661 1034968 1.96 1055629 115 20946 1012042 2.03 1032988 116 20428 997243 2.01 1017671 117 20417 980870 2.04 1001287 118 20237 956466 2.07 976703 119 19961 934330 2.09 954291 120 19892 917915 2.12 937807 121 19377 902091 2.10 921468 122 19176 877446 2.14 896622 123 19291 863784 2.18 883075 124 19028 840732 2.21 859760 125 18992 822942 2.26 841934 126 18460 809788 2.23 828248 127 18395 792223 2.27 810618 128 18231 771343 2.31 789574 129 18015 757687 2.32 775702 130 17764 736613 2.35 754377 131 17488 719944 2.37 737432 132 17352 706293 2.40 723645 133 17037 692334 2.40 709371 134 17004 671043 2.47 688047 135 16675 657106 2.47 673781 136 16450 643702 2.49 660152 137 16114 626287 2.51 642401 138 15998 613217 2.54 629215 139 15717 600013 2.55 615730 140 15453 582001 2.59 597454 141 15163 571311 2.59 586474 142 14649 554959 2.57 569608 143 14387 541013 2.59 555400 144 14015 530798 2.57 544813 145 13796 517323 2.60 531119 146 13825 505252 2.66 519077 147 13546 497409 2.65 510955 148 13672 487245 2.73 500917 149 14388 475097 2.94 489485 150 15214 479709 3.07 494923 151 21150 436631 4.62 457781 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1123812 3884182 22.44 5007994 2 1064988 5078626 17.33 6143614 3 774273 4724166 14.08 5498439 4 758985 4478650 14.49 5237635 5 401961 5409252 6.92 5811213 6 360749 6067136 5.61 6427885 7 318249 6990307 4.35 7308556 8 310881 6796058 4.37 7106939 9 259193 6609525 3.77 6868718 10 241861 6443362 3.62 6685223 11 265814 6325044 4.03 6590858 12 231152 6278326 3.55 6509478 13 214464 6304039 3.29 6518503 14 211739 6286031 3.26 6497770 15 229135 6304072 3.51 6533207 16 254303 6263030 3.90 6517333 17 202159 6260502 3.13 6462661 18 188622 6243620 2.93 6432242 19 190658 6250937 2.96 6441595 20 202886 6253431 3.14 6456317 21 186234 6305517 2.87 6491751 22 175247 6306996 2.70 6482243 23 173793 6371214 2.66 6545007 24 160635 6382529 2.46 6543164 25 161862 6412388 2.46 6574250 26 160550 6419066 2.44 6579616 27 158999 6461513 2.40 6620512 28 152845 6490496 2.30 6643341 29 154891 6521460 2.32 6676351 30 146997 6526132 2.20 6673129 31 148487 6528284 2.22 6676771 32 144868 6557230 2.16 6702098 33 141378 6569888 2.11 6711266 34 138819 6580403 2.07 6719222 35 139648 6591002 2.07 6730650 36 133368 6605478 1.98 6738846 37 133269 6625569 1.97 6758838 38 129935 6625791 1.92 6755726 39 130033 6622112 1.93 6752145 40 124113 6650581 1.83 6774694 41 125785 6659771 1.85 6785556 42 118721 6657964 1.75 6776685 43 121407 6649448 1.79 6770855 44 118085 6664270 1.74 6782355 45 114208 6647194 1.69 6761402 46 112613 6645447 1.67 6758060 47 112749 6635054 1.67 6747803 48 106133 6640378 1.57 6746511 49 107835 6632485 1.60 6740320 50 106470 6618425 1.58 6724895 51 106397 6611563 1.58 6717960 52 103190 6615770 1.54 6718960 53 103630 6593073 1.55 6696703 54 98226 6556322 1.48 6654548 55 101277 6550107 1.52 6651384 56 98171 6504740 1.49 6602911 57 99006 6495335 1.50 6594341 58 99470 6455016 1.52 6554486 59 101101 6421620 1.55 6522721 60 96031 6389125 1.48 6485156 61 97981 6360796 1.52 6458777 62 96470 6321181 1.50 6417651 63 97737 6291520 1.53 6389257 64 97252 6257954 1.53 6355206 65 99690 6215939 1.58 6315629 66 96128 6160473 1.54 6256601 67 98206 6107821 1.58 6206027 68 97843 6063585 1.59 6161428 69 97687 6000746 1.60 6098433 70 96515 5958587 1.59 6055102 71 99874 5920586 1.66 6020460 72 96555 5866748 1.62 5963303 73 99811 5804629 1.69 5904440 74 99753 5751520 1.70 5851273 75 98316 5698509 1.70 5796825 76 98833 5644243 1.72 5743076 77 100388 5588301 1.76 5688689 78 98108 5519748 1.75 5617856 79 100938 5453116 1.82 5554054 80 99150 5395196 1.80 5494346 81 99163 5336059 1.82 5435222 82 99183 5275421 1.85 5374604 83 101790 5205026 1.92 5306816 84 98340 5142625 1.88 5240965 85 100321 5085388 1.93 5185709 86 100782 5023741 1.97 5124523 87 100899 4952202 2.00 5053101 88 101167 4883050 2.03 4984217 89 102291 4817804 2.08 4920095 90 100835 4751821 2.08 4852656 91 101616 4685935 2.12 4787551 92 102131 4622454 2.16 4724585 93 100992 4542117 2.18 4643109 94 100059 4476276 2.19 4576335 95 102231 4404625 2.27 4506856 96 97212 4337933 2.19 4435145 97 98574 4274143 2.25 4372717 98 98291 4211334 2.28 4309625 99 98995 4133378 2.34 4232373 100 97454 4064218 2.34 4161672 101 98264 3996660 2.40 4094924 102 96747 3918064 2.41 4014811 103 95548 3853605 2.42 3949153 104 95010 3790447 2.45 3885457 105 94455 3716000 2.48 3810455 106 94595 3652735 2.52 3747330 107 95494 3589556 2.59 3685050 108 93217 3521686 2.58 3614903 109 92521 3451839 2.61 3544360 110 91837 3385059 2.64 3476896 111 91591 3323286 2.68 3414877 112 89419 3263378 2.67 3352797 113 90799 3193337 2.76 3284136 114 88387 3129340 2.75 3217727 115 87713 3063829 2.78 3151542 116 87385 3009212 2.82 3096597 117 86232 2949562 2.84 3035794 118 85464 2887200 2.87 2972664 119 84665 2827895 2.91 2912560 120 83210 2772939 2.91 2856149 121 83884 2710692 3.00 2794576 122 82769 2659666 3.02 2742435 123 81825 2603209 3.05 2685034 124 80810 2542078 3.08 2622888 125 80086 2493291 3.11 2573377 126 77850 2437630 3.09 2515480 127 78082 2383494 3.17 2461576 128 76933 2336602 3.19 2413535 129 75638 2280651 3.21 2356289 130 75337 2225828 3.27 2301165 131 74000 2181445 3.28 2255445 132 72827 2131836 3.30 2204663 133 72100 2083810 3.34 2155910 134 71705 2037041 3.40 2108746 135 70697 1990221 3.43 2060918 136 70180 1941074 3.49 2011254 137 69060 1897440 3.51 1966500 138 66696 1851887 3.48 1918583 139 66584 1805671 3.56 1872255 140 65103 1764116 3.56 1829219 141 64207 1722899 3.59 1787106 142 63355 1682235 3.63 1745590 143 62675 1646171 3.67 1708846 144 61644 1606831 3.69 1668475 145 61787 1570194 3.79 1631981 146 60975 1539136 3.81 1600111 147 60369 1510691 3.84 1571060 148 59468 1479679 3.86 1539147 149 59453 1453386 3.93 1512839 150 58415 1450335 3.87 1508750 151 75119 1329715 5.35 1404834 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 53607 291644 15.53 345251 2 48326 489339 8.99 537665 3 38787 525775 6.87 564562 4 32205 402151 7.41 434356 5 17736 504749 3.39 522485 6 13899 308299 4.31 322198 7 13111 293250 4.28 306361 8 16947 285835 5.60 302782 9 13124 277609 4.51 290733 10 14382 266642 5.12 281024 11 21408 265418 7.46 286826 12 29698 260051 10.25 289749 13 20243 254749 7.36 274992 14 11302 252272 4.29 263574 15 11375 252654 4.31 264029 16 12108 239837 4.81 251945 17 10079 238519 4.05 248598 18 10247 239458 4.10 249705 19 10098 225696 4.28 235794 20 10014 223143 4.29 233157 21 9928 220641 4.31 230569 22 9302 215173 4.14 224475 23 8908 211025 4.05 219933 24 8043 206606 3.75 214649 25 8077 200992 3.86 209069 26 7911 197161 3.86 205072 27 7604 194215 3.77 201819 28 7527 185954 3.89 193481 29 7168 182690 3.78 189858 30 6633 178507 3.58 185140 31 6479 173755 3.59 180234 32 6331 170082 3.59 176413 33 6099 167378 3.52 173477 34 5817 160998 3.49 166815 35 5659 158628 3.44 164287 36 5359 156595 3.31 161954 37 5171 151830 3.29 157001 38 4970 148492 3.24 153462 39 4914 144611 3.29 149525 40 4720 140335 3.25 145055 41 4526 137022 3.20 141548 42 4171 135855 2.98 140026 43 4058 130692 3.01 134750 44 4160 128700 3.13 132860 45 3998 126166 3.07 130164 46 3726 121698 2.97 125424 47 3719 119996 3.01 123715 48 3521 117172 2.92 120693 49 3340 113442 2.86 116782 50 3339 111590 2.91 114929 51 3147 110202 2.78 113349 52 2979 105920 2.74 108899 53 2895 103995 2.71 106890 54 2790 101610 2.67 104400 55 2740 99406 2.68 102146 56 2765 97975 2.74 100740 57 2501 95368 2.56 97869 58 2484 91094 2.65 93578 59 2562 90866 2.74 93428 60 2384 88316 2.63 90700 61 2283 85910 2.59 88193 62 2238 83902 2.60 86140 63 2201 82042 2.61 84243 64 2092 79592 2.56 81684 65 2090 77248 2.63 79338 66 1998 76414 2.55 78412 67 1941 74135 2.55 76076 68 1966 71628 2.67 73594 69 1798 69954 2.51 71752 70 1759 67761 2.53 69520 71 1789 67379 2.59 69168 72 1606 64780 2.42 66386 73 1731 62362 2.70 64093 74 1623 61286 2.58 62909 75 1679 59609 2.74 61288 76 1582 57833 2.66 59415 77 1555 56719 2.67 58274 78 1516 55203 2.67 56719 79 1462 53544 2.66 55006 80 1377 52353 2.56 53730 81 1332 51185 2.54 52517 82 1348 49701 2.64 51049 83 1308 48232 2.64 49540 84 1343 48072 2.72 49415 85 1240 45590 2.65 46830 86 1317 44833 2.85 46150 87 1111 43911 2.47 45022 88 1189 42861 2.70 44050 89 1143 41627 2.67 42770 90 1179 40464 2.83 41643 91 1107 39516 2.73 40623 92 1008 38041 2.58 39049 93 1001 37594 2.59 38595 94 969 36491 2.59 37460 95 976 36084 2.63 37060 96 964 35405 2.65 36369 97 916 33732 2.64 34648 98 947 32270 2.85 33217 99 890 31767 2.73 32657 100 902 30234 2.90 31136 101 752 30108 2.44 30860 102 802 29727 2.63 30529 103 772 28496 2.64 29268 104 780 27887 2.72 28667 105 737 27205 2.64 27942 106 760 26537 2.78 27297 107 742 25940 2.78 26682 108 672 25292 2.59 25964 109 690 24158 2.78 24848 110 687 23769 2.81 24456 111 667 23422 2.77 24089 112 660 22620 2.84 23280 113 617 22719 2.64 23336 114 590 21890 2.62 22480 115 573 20803 2.68 21376 116 627 20650 2.95 21277 117 550 20094 2.66 20644 118 581 19537 2.89 20118 119 553 18909 2.84 19462 120 535 19362 2.69 19897 121 551 18303 2.92 18854 122 524 18141 2.81 18665 123 525 17532 2.91 18057 124 514 16811 2.97 17325 125 495 16357 2.94 16852 126 473 15987 2.87 16460 127 485 15483 3.04 15968 128 471 15284 2.99 15755 129 403 14883 2.64 15286 130 391 14254 2.67 14645 131 377 13968 2.63 14345 132 422 13738 2.98 14160 133 391 13692 2.78 14083 134 407 13149 3.00 13556 135 376 12809 2.85 13185 136 340 12327 2.68 12667 137 373 11859 3.05 12232 138 386 11981 3.12 12367 139 359 11160 3.12 11519 140 384 11106 3.34 11490 141 353 10804 3.16 11157 142 322 10683 2.93 11005 143 300 10207 2.86 10507 144 313 10366 2.93 10679 145 308 9806 3.05 10114 146 295 9691 2.95 9986 147 310 9547 3.14 9857 148 267 9181 2.83 9448 149 267 9074 2.86 9341 150 210 8409 2.44 8619 151 175 7216 2.37 7391 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 91885 848820 9.77 940705 2 48052 298700 13.86 346752 3 42364 392310 9.75 434674 4 32135 342162 8.59 374297 5 18033 453159 3.83 471192 6 11871 573355 2.03 585226 7 10704 337461 3.07 348165 8 11034 320300 3.33 331334 9 10136 313263 3.13 323399 10 16376 297001 5.23 313377 11 24210 292934 7.63 317144 12 9468 294075 3.12 303543 13 9020 294796 2.97 303816 14 7108 287000 2.42 294108 15 8129 276141 2.86 284270 16 9879 267507 3.56 277386 17 6528 269405 2.37 275933 18 6714 264278 2.48 270992 19 6417 254715 2.46 261132 20 6250 243912 2.50 250162 21 5973 241128 2.42 247101 22 5261 238528 2.16 243789 23 5061 234026 2.12 239087 24 4864 226933 2.10 231797 25 4635 223991 2.03 228626 26 4102 215261 1.87 219363 27 4222 211213 1.96 215435 28 3996 207604 1.89 211600 29 3584 200585 1.76 204169 30 3361 195342 1.69 198703 31 3332 192449 1.70 195781 32 3121 187830 1.63 190951 33 2952 184585 1.57 187537 34 2854 178516 1.57 181370 35 2725 174231 1.54 176956 36 2560 172328 1.46 174888 37 2307 168225 1.35 170532 38 2215 162660 1.34 164875 39 2137 160137 1.32 162274 40 1944 156312 1.23 158256 41 1875 152103 1.22 153978 42 1776 148427 1.18 150203 43 1763 146308 1.19 148071 44 1631 141877 1.14 143508 45 1545 140022 1.09 141567 46 1520 137466 1.09 138986 47 1465 132170 1.10 133635 48 1283 130083 0.98 131366 49 1280 128110 0.99 129390 50 1185 123188 0.95 124373 51 1111 120898 0.91 122009 52 1058 118740 0.88 119798 53 1018 116272 0.87 117290 54 920 112626 0.81 113546 55 933 110340 0.84 111273 56 860 106592 0.80 107452 57 823 105025 0.78 105848 58 841 102586 0.81 103427 59 787 99439 0.79 100226 60 782 97088 0.80 97870 61 741 95337 0.77 96078 62 720 91831 0.78 92551 63 660 90575 0.72 91235 64 658 88550 0.74 89208 65 648 85601 0.75 86249 66 601 83504 0.71 84105 67 607 82231 0.73 82838 68 563 80166 0.70 80729 69 573 77854 0.73 78427 70 614 75444 0.81 76058 71 533 73512 0.72 74045 72 597 71291 0.83 71888 73 534 69483 0.76 70017 74 545 67037 0.81 67582 75 507 66375 0.76 66882 76 487 64727 0.75 65214 77 461 62744 0.73 63205 78 485 60644 0.79 61129 79 482 59428 0.80 59910 80 465 58071 0.79 58536 81 463 57868 0.79 58331 82 477 55068 0.86 55545 83 441 53539 0.82 53980 84 400 51829 0.77 52229 85 408 51966 0.78 52374 86 425 49512 0.85 49937 87 400 48256 0.82 48656 88 355 47538 0.74 47893 89 395 45414 0.86 45809 90 346 44216 0.78 44562 91 339 43294 0.78 43633 92 354 41780 0.84 42134 93 346 41028 0.84 41374 94 313 39961 0.78 40274 95 339 38486 0.87 38825 96 315 37974 0.82 38289 97 310 37221 0.83 37531 98 306 35440 0.86 35746 99 295 34829 0.84 35124 100 257 34128 0.75 34385 101 309 33379 0.92 33688 102 271 31986 0.84 32257 103 289 31988 0.90 32277 104 280 30465 0.91 30745 105 267 30093 0.88 30360 106 263 29244 0.89 29507 107 241 27929 0.86 28170 108 288 27824 1.02 28112 109 240 27156 0.88 27396 110 227 25788 0.87 26015 111 220 25382 0.86 25602 112 205 24975 0.81 25180 113 220 24343 0.90 24563 114 221 23821 0.92 24042 115 223 22967 0.96 23190 116 213 22598 0.93 22811 117 221 22173 0.99 22394 118 210 21562 0.96 21772 119 174 20702 0.83 20876 120 184 20145 0.91 20329 121 208 20348 1.01 20556 122 191 18895 1.00 19086 123 201 18945 1.05 19146 124 195 18393 1.05 18588 125 203 17823 1.13 18026 126 196 17607 1.10 17803 127 179 16999 1.04 17178 128 150 16477 0.90 16627 129 168 16012 1.04 16180 130 163 15343 1.05 15506 131 168 14850 1.12 15018 132 149 14714 1.00 14863 133 123 14254 0.86 14377 134 132 13758 0.95 13890 135 127 13553 0.93 13680 136 136 13230 1.02 13366 137 135 12867 1.04 13002 138 105 12890 0.81 12995 139 152 12424 1.21 12576 140 124 12005 1.02 12129 141 134 11944 1.11 12078 142 129 11507 1.11 11636 143 124 11049 1.11 11173 144 154 10752 1.41 10906 145 127 10658 1.18 10785 146 127 10228 1.23 10355 147 107 9930 1.07 10037 148 115 9840 1.16 9955 149 93 9594 0.96 9687 150 94 9378 0.99 9472 151 85 7588 1.11 7673 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 222055 779332 22.17 1001387 2 208759 1034278 16.79 1243037 3 157340 894811 14.95 1052151 4 149958 813930 15.56 963888 5 85805 990968 7.97 1076773 6 76382 1096044 6.51 1172426 7 61362 1249993 4.68 1311355 8 72400 1170093 5.83 1242493 9 50103 1116950 4.29 1167053 10 49771 1049576 4.53 1099347 11 54167 991247 5.18 1045414 12 47613 956466 4.74 1004079 13 40819 940257 4.16 981076 14 39345 918819 4.11 958164 15 45966 902383 4.85 948349 16 53195 871564 5.75 924759 17 37303 854388 4.18 891691 18 36663 823391 4.26 860054 19 36544 805155 4.34 841699 20 36062 785295 4.39 821357 21 34814 765207 4.35 800021 22 31451 751318 4.02 782769 23 31975 740929 4.14 772904 24 27451 722027 3.66 749478 25 27274 706474 3.72 733748 26 26022 691068 3.63 717090 27 26265 677396 3.73 703661 28 24416 662837 3.55 687253 29 24421 649589 3.62 674010 30 21974 634018 3.35 655992 31 21829 616825 3.42 638654 32 21711 607770 3.45 629481 33 21055 593012 3.43 614067 34 19879 578556 3.32 598435 35 19992 565961 3.41 585953 36 18081 553362 3.16 571443 37 17836 543067 3.18 560903 38 16921 530382 3.09 547303 39 17287 515641 3.24 532928 40 16272 506175 3.11 522447 41 16114 493887 3.16 510001 42 14205 482656 2.86 496861 43 15262 469894 3.15 485156 44 14840 462458 3.11 477298 45 14013 449449 3.02 463462 46 13660 440834 3.01 454494 47 13653 429864 3.08 443517 48 11825 421143 2.73 432968 49 11761 410425 2.79 422186 50 11869 402154 2.87 414023 51 12296 392628 3.04 404924 52 11685 384770 2.95 396455 53 11404 375315 2.95 386719 54 9680 365453 2.58 375133 55 10384 357304 2.82 367688 56 9911 348842 2.76 358753 57 10050 340906 2.86 350956 58 10305 332301 3.01 342606 59 10104 323731 3.03 333835 60 8687 314916 2.68 323603 61 8696 306728 2.76 315424 62 8570 299734 2.78 308304 63 8660 292560 2.87 301220 64 8603 285484 2.93 294087 65 8980 279175 3.12 288155 66 7595 270226 2.73 277821 67 7868 263428 2.90 271296 68 7551 257348 2.85 264899 69 7581 249340 2.95 256921 70 7514 242726 3.00 250240 71 8161 238106 3.31 246267 72 6960 231783 2.92 238743 73 6973 225562 3.00 232535 74 7385 218236 3.27 225621 75 6897 213237 3.13 220134 76 6803 208600 3.16 215403 77 7156 203839 3.39 210995 78 6338 197635 3.11 203973 79 6748 191133 3.41 197881 80 6373 188131 3.28 194504 81 6282 183332 3.31 189614 82 6072 178200 3.30 184272 83 6776 173512 3.76 180288 84 5633 169056 3.22 174689 85 5852 164245 3.44 170097 86 6065 161106 3.63 167171 87 5855 156755 3.60 162610 88 5720 152983 3.60 158703 89 5850 149137 3.77 154987 90 5363 144731 3.57 150094 91 5310 142185 3.60 147495 92 5312 138476 3.69 143788 93 5235 134020 3.76 139255 94 5171 129955 3.83 135126 95 5513 127127 4.16 132640 96 4522 123493 3.53 128015 97 4735 121352 3.76 126087 98 4687 118963 3.79 123650 99 4829 114382 4.05 119211 100 4675 112167 4.00 116842 101 4724 109217 4.15 113941 102 4310 106297 3.90 110607 103 4202 103385 3.91 107587 104 4200 100670 4.00 104870 105 4121 97858 4.04 101979 106 4274 96217 4.25 100491 107 4625 93169 4.73 97794 108 3822 90725 4.04 94547 109 3780 87843 4.13 91623 110 3721 85867 4.15 89588 111 3792 83795 4.33 87587 112 3567 81830 4.18 85397 113 3769 79275 4.54 83044 114 3479 76979 4.32 80458 115 3511 74956 4.47 78467 116 3481 73198 4.54 76679 117 3276 72217 4.34 75493 118 3275 70128 4.46 73403 119 3427 67635 4.82 71062 120 3055 65870 4.43 68925 121 3104 63730 4.64 66834 122 2954 62836 4.49 65790 123 3028 61000 4.73 64028 124 2805 59097 4.53 61902 125 3012 58071 4.93 61083 126 2571 56390 4.36 58961 127 2735 54876 4.75 57611 128 2738 53812 4.84 56550 129 2632 52014 4.82 54646 130 2573 50973 4.81 53546 131 2649 49816 5.05 52465 132 2321 48567 4.56 50888 133 2303 47576 4.62 49879 134 2327 45760 4.84 48087 135 2263 45040 4.78 47303 136 2300 44091 4.96 46391 137 2245 42571 5.01 44816 138 2049 41358 4.72 43407 139 2074 39793 4.95 41867 140 1940 39503 4.68 41443 141 1930 38290 4.80 40220 142 1984 37836 4.98 39820 143 2024 36806 5.21 38830 144 1845 35496 4.94 37341 145 1786 34480 4.92 36266 146 1708 33950 4.79 35658 147 1634 33351 4.67 34985 148 1665 32983 4.81 34648 149 1746 31517 5.25 33263 150 1419 30436 4.45 31855 151 1252 25144 4.74 26396