CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 295527 1687097 14.91 1982624 2 289894 2765120 9.49 3055014 3 218528 3220045 6.36 3438573 4 179561 2537925 6.61 2717486 5 96751 3174540 2.96 3271291 6 79573 2180202 3.52 2259775 7 74660 2057188 3.50 2131848 8 82870 2139262 3.73 2222132 9 79424 2102241 3.64 2181665 10 78981 2086572 3.65 2165553 11 96571 2108739 4.38 2205310 12 107002 2154186 4.73 2261188 13 89474 2159578 3.98 2249052 14 77828 2188644 3.43 2266472 15 77673 2233492 3.36 2311165 16 80135 2184557 3.54 2264692 17 75688 2171547 3.37 2247235 18 73263 2278719 3.11 2351982 19 73931 2189235 3.27 2263166 20 75073 2204464 3.29 2279537 21 74275 2233916 3.22 2308191 22 74957 2239689 3.24 2314646 23 73844 2254140 3.17 2327984 24 72503 2279903 3.08 2352406 25 73539 2266206 3.14 2339745 26 74817 2274166 3.19 2348983 27 72713 2293587 3.07 2366300 28 73435 2273209 3.13 2346644 29 73920 2268206 3.16 2342126 30 72462 2282076 3.08 2354538 31 72057 2261864 3.09 2333921 32 73899 2273487 3.15 2347386 33 72290 2284149 3.07 2356439 34 71731 2270914 3.06 2342645 35 73236 2285953 3.10 2359189 36 71477 2305767 3.01 2377244 37 72907 2292157 3.08 2365064 38 72853 2289232 3.08 2362085 39 71441 2296366 3.02 2367807 40 70968 2270192 3.03 2341160 41 71984 2263238 3.08 2335222 42 70167 2271321 3.00 2341488 43 71036 2248794 3.06 2319830 44 70882 2260843 3.04 2331725 45 69770 2271680 2.98 2341450 46 70546 2247531 3.04 2318077 47 70467 2249095 3.04 2319562 48 69440 2252383 2.99 2321823 49 69316 2226831 3.02 2296147 50 69772 2217429 3.05 2287201 51 68532 2216136 3.00 2284668 52 69036 2184738 3.06 2253774 53 68520 2171838 3.06 2240358 54 67759 2166665 3.03 2234424 55 67659 2141447 3.06 2209106 56 67589 2136711 3.07 2204300 57 66432 2132473 3.02 2198905 58 66245 2096345 3.06 2162590 59 66534 2089141 3.09 2155675 60 65020 2082933 3.03 2147953 61 64963 2041144 3.08 2106107 62 64900 2021436 3.11 2086336 63 63714 2007944 3.08 2071658 64 63438 1968580 3.12 2032018 65 63248 1948524 3.14 2011772 66 62712 1940080 3.13 2002792 67 62244 1906866 3.16 1969110 68 61674 1885741 3.17 1947415 69 60732 1867988 3.15 1928720 70 60555 1836034 3.19 1896589 71 59860 1810867 3.20 1870727 72 58237 1787083 3.16 1845320 73 58906 1747926 3.26 1806832 74 57733 1724383 3.24 1782116 75 56836 1701879 3.23 1758715 76 56088 1666377 3.26 1722465 77 55252 1639899 3.26 1695151 78 54057 1623528 3.22 1677585 79 53241 1583037 3.25 1636278 80 53217 1562295 3.29 1615512 81 52234 1536661 3.29 1588895 82 51813 1500397 3.34 1552210 83 51083 1474452 3.35 1525535 84 50336 1454394 3.35 1504730 85 49794 1417123 3.39 1466917 86 48917 1392760 3.39 1441677 87 47628 1369980 3.36 1417608 88 47297 1338201 3.41 1385498 89 46114 1311457 3.40 1357571 90 45614 1285194 3.43 1330808 91 44477 1249123 3.44 1293600 92 44663 1224361 3.52 1269024 93 42915 1198854 3.46 1241769 94 42293 1168257 3.49 1210550 95 41741 1145096 3.52 1186837 96 40730 1126563 3.49 1167293 97 40305 1091893 3.56 1132198 98 39367 1067583 3.56 1106950 99 38606 1046564 3.56 1085170 100 37312 1014838 3.55 1052150 101 37479 991094 3.64 1028573 102 36316 969314 3.61 1005630 103 35144 939917 3.60 975061 104 34783 918492 3.65 953275 105 33760 899099 3.62 932859 106 33374 871464 3.69 904838 107 32591 854138 3.68 886729 108 31786 833153 3.67 864939 109 31311 808024 3.73 839335 110 30731 789757 3.75 820488 111 30008 771937 3.74 801945 112 29156 744746 3.77 773902 113 28817 726630 3.81 755447 114 28099 705892 3.83 733991 115 27449 684214 3.86 711663 116 26982 670038 3.87 697020 117 26567 650279 3.93 676846 118 25849 631394 3.93 657243 119 24887 617018 3.88 641905 120 24464 602669 3.90 627133 121 23707 580560 3.92 604267 122 23574 565686 4.00 589260 123 22879 549951 3.99 572830 124 22362 532013 4.03 554375 125 21597 514600 4.03 536197 126 20897 502324 3.99 523221 127 20814 486050 4.11 506864 128 20332 472383 4.13 492715 129 19313 458216 4.04 477529 130 19156 444296 4.13 463452 131 18744 429840 4.18 448584 132 18143 418688 4.15 436831 133 17592 403967 4.17 421559 134 17185 392005 4.20 409190 135 16894 381262 4.24 398156 136 16501 367642 4.30 384143 137 16036 357509 4.29 373545 138 15374 346572 4.25 361946 139 15410 334545 4.40 349955 140 14944 324440 4.40 339384 141 14257 314755 4.33 329012 142 13667 303864 4.30 317531 143 13229 293672 4.31 306901 144 13092 285522 4.38 298614 145 12579 275116 4.37 287695 146 12398 267149 4.44 279547 147 12644 261677 4.61 274321 148 12707 253826 4.77 266533 149 13257 248994 5.06 262251 150 11808 243778 4.62 255586 151 11450 225065 4.84 236515 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 481137 4936386 8.88 5417523 2 262761 1862561 12.36 2125322 3 184329 2758378 6.26 2942707 4 161860 2341611 6.47 2503471 5 61530 3095149 1.95 3156679 6 51168 3827296 1.32 3878464 7 47634 2508812 1.86 2556446 8 47716 2481884 1.89 2529600 9 40962 2475626 1.63 2516588 10 62904 2418396 2.54 2481300 11 59968 2475515 2.37 2535483 12 39647 2555408 1.53 2595055 13 34544 2597767 1.31 2632311 14 43114 2569027 1.65 2612141 15 34663 2559529 1.34 2594192 16 44515 2537790 1.72 2582305 17 30800 2606111 1.17 2636911 18 28309 2578440 1.09 2606749 19 27987 2590705 1.07 2618692 20 28634 2557050 1.11 2585684 21 27852 2603989 1.06 2631841 22 26319 2644703 0.99 2671022 23 25347 2630820 0.95 2656167 24 24396 2630372 0.92 2654768 25 24766 2650328 0.93 2675094 26 24257 2608679 0.92 2632936 27 23761 2632431 0.89 2656192 28 24189 2642833 0.91 2667022 29 23482 2631789 0.88 2655271 30 23287 2624654 0.88 2647941 31 23859 2640426 0.90 2664285 32 23282 2637867 0.87 2661149 33 23563 2662185 0.88 2685748 34 23244 2641609 0.87 2664853 35 23461 2649732 0.88 2673193 36 23174 2661389 0.86 2684563 37 23399 2677000 0.87 2700399 38 23544 2638358 0.88 2661902 39 22981 2647710 0.86 2670691 40 22675 2647547 0.85 2670222 41 22793 2641465 0.86 2664258 42 22919 2639474 0.86 2662393 43 22869 2643710 0.86 2666579 44 22546 2624972 0.85 2647518 45 22779 2647247 0.85 2670026 46 23044 2630045 0.87 2653089 47 23377 2606186 0.89 2629563 48 22911 2612875 0.87 2635786 49 23250 2606681 0.88 2629931 50 23319 2569586 0.90 2592905 51 22673 2572725 0.87 2595398 52 22993 2566415 0.89 2589408 53 23361 2547171 0.91 2570532 54 23049 2527565 0.90 2550614 55 23124 2516875 0.91 2539999 56 23218 2485492 0.93 2508710 57 23350 2483879 0.93 2507229 58 23933 2455632 0.97 2479565 59 24194 2425173 0.99 2449367 60 24121 2411652 0.99 2435773 61 24046 2386214 1.00 2410260 62 24172 2349182 1.02 2373354 63 24732 2338639 1.05 2363371 64 24511 2312149 1.05 2336660 65 24587 2274998 1.07 2299585 66 24544 2256145 1.08 2280689 67 25056 2230831 1.11 2255887 68 24955 2199908 1.12 2224863 69 24897 2176140 1.13 2201037 70 24940 2135788 1.15 2160728 71 25140 2105394 1.18 2130534 72 25042 2079718 1.19 2104760 73 25205 2047557 1.22 2072762 74 24860 2003473 1.23 2028333 75 24921 1982027 1.24 2006948 76 24839 1949076 1.26 1973915 77 25035 1916671 1.29 1941706 78 24964 1885603 1.31 1910567 79 24937 1855573 1.33 1880510 80 24454 1809556 1.33 1834010 81 24541 1795033 1.35 1819574 82 24276 1748953 1.37 1773229 83 24342 1713469 1.40 1737811 84 24541 1689886 1.43 1714427 85 24406 1663037 1.45 1687443 86 24071 1620702 1.46 1644773 87 23811 1596590 1.47 1620401 88 23790 1556780 1.51 1580570 89 23932 1526156 1.54 1550088 90 23465 1495784 1.54 1519249 91 23510 1458974 1.59 1482484 92 23207 1423371 1.60 1446578 93 22911 1400817 1.61 1423728 94 22729 1361407 1.64 1384136 95 22451 1331758 1.66 1354209 96 22338 1307036 1.68 1329374 97 22148 1277015 1.70 1299163 98 21831 1238724 1.73 1260555 99 21594 1214388 1.75 1235982 100 21140 1184368 1.75 1205508 101 20777 1153187 1.77 1173964 102 20682 1120666 1.81 1141348 103 20110 1098758 1.80 1118868 104 20090 1067239 1.85 1087329 105 20154 1046671 1.89 1066825 106 19485 1014331 1.88 1033816 107 19185 986932 1.91 1006117 108 18887 965673 1.92 984560 109 18837 941132 1.96 959969 110 18354 912965 1.97 931319 111 18046 889635 1.99 907681 112 17972 864210 2.04 882182 113 17580 839388 2.05 856968 114 17353 816481 2.08 833834 115 17081 793105 2.11 810186 116 16704 774431 2.11 791135 117 16493 756258 2.13 772751 118 16164 731292 2.16 747456 119 15811 707202 2.19 723013 120 15555 689858 2.21 705413 121 15167 674295 2.20 689462 122 15149 649795 2.28 664944 123 14737 635467 2.27 650204 124 14466 613378 2.30 627844 125 14219 596931 2.33 611150 126 14182 578932 2.39 593114 127 13785 562733 2.39 576518 128 13467 542773 2.42 556240 129 13050 531825 2.40 544875 130 13131 510745 2.51 523876 131 12557 494414 2.48 506971 132 12560 482245 2.54 494805 133 12359 466652 2.58 479011 134 12192 449851 2.64 462043 135 11889 437756 2.64 449645 136 11094 424533 2.55 435627 137 11496 410770 2.72 422266 138 10911 399342 2.66 410253 139 10999 384806 2.78 395805 140 10713 371428 2.80 382141 141 10236 361186 2.76 371422 142 9866 349349 2.75 359215 143 9695 336997 2.80 346692 144 9501 327179 2.82 336680 145 9364 316805 2.87 326169 146 9474 308102 2.98 317576 147 9405 299753 3.04 309158 148 9344 291428 3.11 300772 149 9584 283942 3.27 293526 150 10074 285324 3.41 295398 151 14661 259274 5.35 273935 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1380317 5166593 21.08 6546910 2 1245485 6514201 16.05 7759686 3 924961 6246170 12.90 7171131 4 882004 5830106 13.14 6712110 5 429439 6943242 5.82 7372681 6 376432 7739218 4.64 8115650 7 347925 8798060 3.80 9145985 8 323878 8578032 3.64 8901910 9 297673 8293092 3.47 8590765 10 281680 8107495 3.36 8389175 11 295286 7994505 3.56 8289791 12 264490 7931321 3.23 8195811 13 256273 7932842 3.13 8189115 14 255397 7886653 3.14 8142050 15 265791 7874105 3.27 8139896 16 278300 7863223 3.42 8141523 17 246724 7810081 3.06 8056805 18 233415 7808577 2.90 8041992 19 235840 7799173 2.94 8035013 20 246275 7843576 3.04 8089851 21 231544 7902099 2.85 8133643 22 225562 7913883 2.77 8139445 23 222722 7965552 2.72 8188274 24 208611 7985786 2.55 8194397 25 210844 8017140 2.56 8227984 26 210270 8032352 2.55 8242622 27 208925 8074824 2.52 8283749 28 203874 8125158 2.45 8329032 29 206116 8162520 2.46 8368636 30 199046 8178560 2.38 8377606 31 199523 8192951 2.38 8392474 32 194271 8233185 2.31 8427456 33 188659 8243082 2.24 8431741 34 187809 8262446 2.22 8450255 35 186838 8273166 2.21 8460004 36 180971 8277562 2.14 8458533 37 180641 8304329 2.13 8484970 38 176430 8287853 2.08 8464283 39 176948 8281649 2.09 8458597 40 169890 8305438 2.00 8475328 41 170558 8311218 2.01 8481776 42 162404 8294053 1.92 8456457 43 162699 8266215 1.93 8428914 44 158875 8267040 1.89 8425915 45 152742 8223998 1.82 8376740 46 150241 8196626 1.80 8346867 47 149268 8156558 1.80 8305826 48 141986 8141696 1.71 8283682 49 141617 8103882 1.72 8245499 50 138729 8057770 1.69 8196499 51 137813 8032575 1.69 8170388 52 133122 8000007 1.64 8133129 53 132447 7954679 1.64 8087126 54 125646 7884457 1.57 8010103 55 129456 7843966 1.62 7973422 56 124423 7750936 1.58 7875359 57 125218 7696927 1.60 7822145 58 125179 7620663 1.62 7745842 59 125857 7538032 1.64 7663889 60 120520 7469047 1.59 7589567 61 121302 7400608 1.61 7521910 62 119768 7319965 1.61 7439733 63 119789 7246644 1.63 7366433 64 118292 7167205 1.62 7285497 65 119817 7080115 1.66 7199932 66 116378 6978942 1.64 7095320 67 117598 6875575 1.68 6993173 68 115483 6777182 1.68 6892665 69 115172 6671917 1.70 6787089 70 114055 6588124 1.70 6702179 71 116887 6499326 1.77 6616213 72 112655 6402961 1.73 6515616 73 114008 6290623 1.78 6404631 74 114392 6190123 1.81 6304515 75 111198 6098117 1.79 6209315 76 111077 5993201 1.82 6104278 77 111058 5896559 1.85 6007617 78 108720 5786583 1.84 5895303 79 110387 5667832 1.91 5778219 80 108263 5566962 1.91 5675225 81 107275 5471725 1.92 5579000 82 105947 5366187 1.94 5472134 83 107035 5257317 2.00 5364352 84 103320 5159055 1.96 5262375 85 104084 5057187 2.02 5161271 86 103078 4956894 2.04 5059972 87 102632 4852400 2.07 4955032 88 101918 4749420 2.10 4851338 89 101331 4644820 2.14 4746151 90 99508 4551170 2.14 4650678 91 99153 4450937 2.18 4550090 92 98618 4353893 2.21 4452511 93 97139 4252622 2.23 4349761 94 95492 4150926 2.25 4246418 95 95740 4054319 2.31 4150059 96 92632 3963012 2.28 4055644 97 91546 3869226 2.31 3960772 98 90805 3781640 2.34 3872445 99 90081 3687747 2.38 3777828 100 87863 3595526 2.39 3683389 101 87358 3501018 2.43 3588376 102 85328 3410432 2.44 3495760 103 84051 3327545 2.46 3411596 104 82376 3244066 2.48 3326442 105 81587 3160738 2.52 3242325 106 80799 3078058 2.56 3158857 107 80260 3000960 2.60 3081220 108 77783 2917072 2.60 2994855 109 77024 2838559 2.64 2915583 110 75734 2762249 2.67 2837983 111 75177 2685775 2.72 2760952 112 72917 2616560 2.71 2689477 113 72046 2542356 2.76 2614402 114 71278 2471589 2.80 2542867 115 69124 2400060 2.80 2469184 116 68095 2339503 2.83 2407598 117 66792 2269011 2.86 2335803 118 65699 2210184 2.89 2275883 119 64634 2144645 2.93 2209279 120 62818 2084104 2.93 2146922 121 62533 2024524 3.00 2087057 122 60806 1968890 3.00 2029696 123 60329 1909756 3.06 1970085 124 58894 1853172 3.08 1912066 125 58366 1799146 3.14 1857512 126 56623 1749346 3.14 1805969 127 55605 1695367 3.18 1750972 128 54411 1645623 3.20 1700034 129 53320 1594804 3.24 1648124 130 52271 1544457 3.27 1596728 131 51373 1501551 3.31 1552924 132 49787 1453509 3.31 1503296 133 48749 1410498 3.34 1459247 134 47888 1366227 3.39 1414115 135 47555 1324668 3.47 1372223 136 46219 1281686 3.48 1327905 137 45155 1242643 3.51 1287798 138 43671 1202515 3.50 1246186 139 43668 1165464 3.61 1209132 140 41915 1125518 3.59 1167433 141 40904 1090684 3.61 1131588 142 39929 1059095 3.63 1099024 143 39689 1026117 3.72 1065806 144 39529 995022 3.82 1034551 145 39070 965202 3.89 1004272 146 37988 940532 3.88 978520 147 37892 916375 3.97 954267 148 37163 891439 4.00 928602 149 36750 866526 4.07 903276 150 35567 861733 3.96 897300 151 47490 786875 5.69 834365 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 29832 168604 15.03 198436 2 26823 286669 8.56 313492 3 20555 304155 6.33 324710 4 16842 233069 6.74 249911 5 9063 295607 2.97 304670 6 6925 178398 3.74 185323 7 6670 168181 3.81 174851 8 7975 163218 4.66 171193 9 6590 154758 4.08 161348 10 6995 148329 4.50 155324 11 9484 145873 6.10 155357 12 11659 141231 7.63 152890 13 8313 136129 5.76 144442 14 5661 134095 4.05 139756 15 5740 133616 4.12 139356 16 5853 125345 4.46 131198 17 4956 122150 3.90 127106 18 5038 121500 3.98 126538 19 4941 113651 4.17 118592 20 4849 110488 4.20 115337 21 4676 108721 4.12 113397 22 4461 105528 4.06 109989 23 4086 102371 3.84 106457 24 3868 99783 3.73 103651 25 3812 96202 3.81 100014 26 3658 93693 3.76 97351 27 3449 91215 3.64 94664 28 3373 87101 3.73 90474 29 3257 84412 3.72 87669 30 3057 81823 3.60 84880 31 2835 79003 3.46 81838 32 2914 76653 3.66 79567 33 2834 74225 3.68 77059 34 2620 72100 3.51 74720 35 2523 70568 3.45 73091 36 2387 68756 3.36 71143 37 2271 66159 3.32 68430 38 2204 63977 3.33 66181 39 2149 61555 3.37 63704 40 2026 59904 3.27 61930 41 1955 57716 3.28 59671 42 1795 56915 3.06 58710 43 1845 53684 3.32 55529 44 1776 52936 3.25 54712 45 1732 51529 3.25 53261 46 1586 49944 3.08 51530 47 1560 48428 3.12 49988 48 1610 47198 3.30 48808 49 1428 45202 3.06 46630 50 1399 44108 3.07 45507 51 1310 43029 2.95 44339 52 1334 41370 3.12 42704 53 1216 40167 2.94 41383 54 1212 39324 2.99 40536 55 1128 37603 2.91 38731 56 1123 36771 2.96 37894 57 1049 36147 2.82 37196 58 1085 34288 3.07 35373 59 1027 33359 2.99 34386 60 958 33060 2.82 34018 61 928 31190 2.89 32118 62 947 30423 3.02 31370 63 840 29698 2.75 30538 64 856 28641 2.90 29497 65 800 27595 2.82 28395 66 796 27272 2.84 28068 67 772 26299 2.85 27071 68 793 25265 3.04 26058 69 725 24423 2.88 25148 70 674 23605 2.78 24279 71 680 23585 2.80 24265 72 665 22341 2.89 23006 73 693 21293 3.15 21986 74 626 20767 2.93 21393 75 588 20461 2.79 21049 76 618 19551 3.06 20169 77 552 18521 2.89 19073 78 560 18751 2.90 19311 79 538 17737 2.94 18275 80 531 17549 2.94 18080 81 525 16797 3.03 17322 82 543 16330 3.22 16873 83 503 15701 3.10 16204 84 484 15647 3.00 16131 85 513 14652 3.38 15165 86 458 14330 3.10 14788 87 425 13898 2.97 14323 88 403 13602 2.88 14005 89 436 13151 3.21 13587 90 373 12650 2.86 13023 91 391 12278 3.09 12669 92 425 11779 3.48 12204 93 329 11488 2.78 11817 94 341 11187 2.96 11528 95 350 11070 3.06 11420 96 360 10978 3.18 11338 97 330 9958 3.21 10288 98 307 9728 3.06 10035 99 304 9537 3.09 9841 100 285 9289 2.98 9574 101 308 8881 3.35 9189 102 242 8612 2.73 8854 103 289 8130 3.43 8419 104 268 7949 3.26 8217 105 256 7855 3.16 8111 106 218 7736 2.74 7954 107 249 7634 3.16 7883 108 213 7249 2.85 7462 109 229 6790 3.26 7019 110 226 6663 3.28 6889 111 232 6733 3.33 6965 112 219 6399 3.31 6618 113 195 6453 2.93 6648 114 220 6165 3.45 6385 115 202 5717 3.41 5919 116 177 5769 2.98 5946 117 201 5516 3.52 5717 118 162 5434 2.89 5596 119 171 5195 3.19 5366 120 188 5451 3.33 5639 121 197 4699 4.02 4896 122 181 4931 3.54 5112 123 169 4785 3.41 4954 124 137 4553 2.92 4690 125 148 4473 3.20 4621 126 166 4219 3.79 4385 127 158 4044 3.76 4202 128 156 4001 3.75 4157 129 127 3890 3.16 4017 130 126 3723 3.27 3849 131 131 3542 3.57 3673 132 155 3496 4.25 3651 133 112 3393 3.20 3505 134 120 3415 3.39 3535 135 122 3264 3.60 3386 136 104 3142 3.20 3246 137 115 3023 3.66 3138 138 122 2970 3.95 3092 139 116 2783 4.00 2899 140 104 2730 3.67 2834 141 103 2784 3.57 2887 142 116 2648 4.20 2764 143 86 2540 3.27 2626 144 100 2578 3.73 2678 145 91 2490 3.53 2581 146 93 2405 3.72 2498 147 84 2442 3.33 2526 148 85 2246 3.65 2331 149 98 2214 4.24 2312 150 67 2162 3.01 2229 151 48 1722 2.71 1770 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 54457 515690 9.55 570147 2 24132 173432 12.21 197564 3 19877 231848 7.90 251725 4 15701 203346 7.17 219047 5 7296 269968 2.63 277264 6 5759 338819 1.67 344578 7 4985 196550 2.47 201535 8 4987 186765 2.60 191752 9 4606 179865 2.50 184471 10 6404 168185 3.67 174589 11 8958 165394 5.14 174352 12 4018 163184 2.40 167202 13 3907 161483 2.36 165390 14 3306 153393 2.11 156699 15 3480 147973 2.30 151453 16 3881 143214 2.64 147095 17 2836 140987 1.97 143823 18 2899 135860 2.09 138759 19 2773 131502 2.07 134275 20 2637 124754 2.07 127391 21 2566 123430 2.04 125996 22 2308 119583 1.89 121891 23 2159 116477 1.82 118636 24 1999 112194 1.75 114193 25 1890 110277 1.68 112167 26 1774 104447 1.67 106221 27 1746 101221 1.70 102967 28 1649 99691 1.63 101340 29 1514 95639 1.56 97153 30 1392 91792 1.49 93184 31 1371 89886 1.50 91257 32 1289 86931 1.46 88220 33 1271 85001 1.47 86272 34 1093 81437 1.32 82530 35 1138 79298 1.41 80436 36 994 77023 1.27 78017 37 1012 75055 1.33 76067 38 978 73117 1.32 74095 39 872 70065 1.23 70937 40 819 68169 1.19 68988 41 757 66258 1.13 67015 42 739 63881 1.14 64620 43 731 62702 1.15 63433 44 638 60249 1.05 60887 45 643 59097 1.08 59740 46 648 57942 1.11 58590 47 604 54822 1.09 55426 48 520 53654 0.96 54174 49 501 52320 0.95 52821 50 482 49925 0.96 50407 51 464 49621 0.93 50085 52 440 48073 0.91 48513 53 424 46052 0.91 46476 54 423 44588 0.94 45011 55 404 43644 0.92 44048 56 340 41652 0.81 41992 57 360 40702 0.88 41062 58 355 39885 0.88 40240 59 381 38427 0.98 38808 60 332 37356 0.88 37688 61 326 36432 0.89 36758 62 267 34532 0.77 34799 63 281 33896 0.82 34177 64 283 32466 0.86 32749 65 270 31808 0.84 32078 66 267 31000 0.85 31267 67 248 30477 0.81 30725 68 253 29422 0.85 29675 69 275 28377 0.96 28652 70 233 27299 0.85 27532 71 268 26039 1.02 26307 72 228 25429 0.89 25657 73 215 24794 0.86 25009 74 209 23851 0.87 24060 75 184 23407 0.78 23591 76 190 22695 0.83 22885 77 207 21677 0.95 21884 78 203 21067 0.95 21270 79 193 20419 0.94 20612 80 174 19656 0.88 19830 81 217 20113 1.07 20330 82 202 18748 1.07 18950 83 206 18069 1.13 18275 84 179 17880 0.99 18059 85 147 17246 0.85 17393 86 188 16453 1.13 16641 87 156 16012 0.96 16168 88 135 15656 0.85 15791 89 148 14764 0.99 14912 90 153 14511 1.04 14664 91 160 13968 1.13 14128 92 127 13436 0.94 13563 93 143 13315 1.06 13458 94 140 12582 1.10 12722 95 158 12519 1.25 12677 96 107 12055 0.88 12162 97 118 11891 0.98 12009 98 105 11048 0.94 11153 99 137 10648 1.27 10785 100 111 10383 1.06 10494 101 138 10279 1.32 10417 102 114 9726 1.16 9840 103 131 9904 1.31 10035 104 125 9111 1.35 9236 105 92 8918 1.02 9010 106 96 8568 1.11 8664 107 80 8364 0.95 8444 108 97 8296 1.16 8393 109 104 7995 1.28 8099 110 87 7794 1.10 7881 111 89 7493 1.17 7582 112 96 7334 1.29 7430 113 95 7234 1.30 7329 114 79 6779 1.15 6858 115 72 6609 1.08 6681 116 83 6595 1.24 6678 117 95 6533 1.43 6628 118 74 6093 1.20 6167 119 92 5946 1.52 6038 120 85 5709 1.47 5794 121 85 5827 1.44 5912 122 73 5325 1.35 5398 123 74 5304 1.38 5378 124 63 4943 1.26 5006 125 80 4982 1.58 5062 126 65 4967 1.29 5032 127 63 4725 1.32 4788 128 48 4455 1.07 4503 129 56 4218 1.31 4274 130 61 4191 1.43 4252 131 65 3923 1.63 3988 132 51 4077 1.24 4128 133 49 3860 1.25 3909 134 50 3703 1.33 3753 135 57 3663 1.53 3720 136 55 3500 1.55 3555 137 44 3358 1.29 3402 138 42 3322 1.25 3364 139 34 3254 1.03 3288 140 40 3104 1.27 3144 141 51 2986 1.68 3037 142 48 2857 1.65 2905 143 64 2941 2.13 3005 144 49 2797 1.72 2846 145 49 2790 1.73 2839 146 41 2678 1.51 2719 147 41 2707 1.49 2748 148 41 2588 1.56 2629 149 46 2553 1.77 2599 150 51 2460 2.03 2511 151 44 1971 2.18 2015 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 122350 455391 21.18 577741 2 112186 609821 15.54 722007 3 85892 521258 14.15 607150 4 79947 472855 14.46 552802 5 42787 574026 6.94 616813 6 38526 632536 5.74 671062 7 32892 717115 4.39 750007 8 36238 672013 5.12 708251 9 28366 632975 4.29 661341 10 27598 594163 4.44 621761 11 29782 561903 5.03 591685 12 25485 539357 4.51 564842 13 23247 522951 4.26 546198 14 22759 506852 4.30 529611 15 25184 492398 4.87 517582 16 26703 476161 5.31 502864 17 21637 461043 4.48 482680 18 20333 442131 4.40 462464 19 20745 426712 4.64 447457 20 20558 416414 4.70 436972 21 19540 401167 4.64 420707 22 18550 390777 4.53 409327 23 19208 382177 4.79 401385 24 15819 370636 4.09 386455 25 16110 359405 4.29 375515 26 15307 349488 4.20 364795 27 15908 340170 4.47 356078 28 14335 332200 4.14 346535 29 14922 321112 4.44 336034 30 13550 311039 4.17 324589 31 13737 299313 4.39 313050 32 13342 294725 4.33 308067 33 12532 285884 4.20 298416 34 12650 276775 4.37 289425 35 12785 270655 4.51 283440 36 11357 262441 4.15 273798 37 11650 255665 4.36 267315 38 11036 247694 4.27 258730 39 11541 238926 4.61 250467 40 10367 232187 4.27 242554 41 11039 225494 4.67 236533 42 9520 220203 4.14 229723 43 10561 211665 4.75 222226 44 10162 207667 4.67 217829 45 9469 200955 4.50 210424 46 9615 195841 4.68 205456 47 9659 189537 4.85 199196 48 8605 185615 4.43 194220 49 8621 179164 4.59 187785 50 8637 173813 4.73 182450 51 9074 169317 5.09 178391 52 8367 164483 4.84 172850 53 8498 160134 5.04 168632 54 7210 154966 4.45 162176 55 8001 150655 5.04 158656 56 7268 145979 4.74 153247 57 7554 141994 5.05 149548 58 7566 138052 5.20 145618 59 7764 132699 5.53 140463 60 6733 128944 4.96 135677 61 6775 124317 5.17 131092 62 6555 121317 5.13 127872 63 6535 118277 5.24 124812 64 6588 115139 5.41 121727 65 6905 112944 5.76 119849 66 5931 106814 5.26 112745 67 6291 103533 5.73 109824 68 5784 100523 5.44 106307 69 5882 97009 5.72 102891 70 5562 94630 5.55 100192 71 6433 92628 6.49 99061 72 5345 89096 5.66 94441 73 5365 86004 5.87 91369 74 5594 83096 6.31 88690 75 5244 80406 6.12 85650 76 5189 79187 6.15 84376 77 5209 76695 6.36 81904 78 4852 73725 6.17 78577 79 5220 71538 6.80 76758 80 4681 70064 6.26 74745 81 4669 67943 6.43 72612 82 4453 65249 6.39 69702 83 4983 62984 7.33 67967 84 4132 61149 6.33 65281 85 4426 59241 6.95 63667 86 4370 58226 6.98 62596 87 4198 56268 6.94 60466 88 4173 54507 7.11 58680 89 4239 52604 7.46 56843 90 3810 51332 6.91 55142 91 3850 50023 7.15 53873 92 3882 49013 7.34 52895 93 3762 46707 7.45 50469 94 3436 45373 7.04 48809 95 3805 43751 8.00 47556 96 3185 42647 6.95 45832 97 3374 41834 7.46 45208 98 3265 40973 7.38 44238 99 3397 38781 8.05 42178 100 3188 37929 7.75 41117 101 3260 36784 8.14 40044 102 2909 35445 7.58 38354 103 2933 34713 7.79 37646 104 2840 33625 7.79 36465 105 2726 31882 7.88 34608 106 2902 31564 8.42 34466 107 3060 30323 9.17 33383 108 2598 29526 8.09 32124 109 2542 28206 8.27 30748 110 2497 27205 8.41 29702 111 2534 26514 8.72 29048 112 2352 25748 8.37 28100 113 2526 24873 9.22 27399 114 2324 24390 8.70 26714 115 2284 23662 8.80 25946 116 2270 22727 9.08 24997 117 2090 22459 8.51 24549 118 2052 21636 8.66 23688 119 2172 20345 9.65 22517 120 2097 19818 9.57 21915 121 2054 19092 9.71 21146 122 1883 19343 8.87 21226 123 1856 18236 9.24 20092 124 1803 17706 9.24 19509 125 1817 17282 9.51 19099 126 1733 16907 9.30 18640 127 1773 16447 9.73 18220 128 1759 15943 9.94 17702 129 1569 15502 9.19 17071 130 1557 14874 9.48 16431 131 1555 14703 9.56 16258 132 1466 14062 9.44 15528 133 1427 13910 9.30 15337 134 1504 13374 10.11 14878 135 1382 12892 9.68 14274 136 1360 12411 9.88 13771 137 1317 12214 9.73 13531 138 1205 11630 9.39 12835 139 1280 11316 10.16 12596 140 1203 11160 9.73 12363 141 1131 10689 9.57 11820 142 1135 10687 9.60 11822 143 1099 10313 9.63 11412 144 1038 9897 9.49 10935 145 1084 9651 10.10 10735 146 1052 9655 9.83 10707 147 984 9479 9.40 10463 148 992 9258 9.68 10250 149 984 8923 9.93 9907 150 832 8684 8.74 9516 151 769 6973 9.93 7742