../output/01.00-F-Ptuh-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_POC-50-TP2_S14_R1_001.fastq.gz and ../output/01.00-F-Ptuh-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_POC-50-TP2_S14_R2_001.fastq.gz
Data processed at 06:14:03 on 2025-05-01
Alignment Stats
Sequence pairs analysed in total
167114293
Paired-end alignments with a unique best hit
95287182
Pairs without alignments under any condition
44781799
Pairs that did not map uniquely
27045312
Genomic sequence context not extractable (edges of chromosomes)
87
Cytosine Methylation
Total C's analysed
3215206295
Methylated C's in CpG context
24480584
Methylated C's in CHG context
18188843
Methylated C's in CHH context
65242926
Methylated C's in Unknown context
6833414
Unmethylated C's in CpG context
553212268
Unmethylated C's in CHG context
643381408
Unmethylated C's in CHH context
1910700266
Unmethylated C's in Unknown context
35089127
Percentage methylation (CpG context)
4.2%
Percentage methylation (CHG context)
2.7%
Percentage methylation (CHH context)
3.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
27818348
original top strand
CTOT
21421024
complementary to original top strand
CTOB
21393822
complementary to original bottom strand
OB
24653901
original bottom strand
Deduplication
Alignments analysed
95287095
Unique alignments
75134038
Duplicates removed
20153057
Duplicated alignments were found at 12141545 different positions
