CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 381893 1539755 19.87 1921648 2 376673 2700057 12.24 3076730 3 315150 3066754 9.32 3381904 4 248491 2255422 9.92 2503913 5 119019 2975752 3.85 3094771 6 101768 2004780 4.83 2106548 7 98336 1911585 4.89 2009921 8 98219 1993933 4.69 2092152 9 95544 1965309 4.64 2060853 10 95553 1960926 4.65 2056479 11 100371 1999880 4.78 2100251 12 100786 2036843 4.71 2137629 13 92250 2038453 4.33 2130703 14 91063 2079947 4.19 2171010 15 90026 2129461 4.06 2219487 16 90108 2094208 4.13 2184316 17 88327 2099054 4.04 2187381 18 84633 2209020 3.69 2293653 19 84055 2136158 3.79 2220213 20 85572 2167076 3.80 2252648 21 83785 2197173 3.67 2280958 22 83204 2186292 3.67 2269496 23 82581 2209877 3.60 2292458 24 80319 2232155 3.47 2312474 25 80284 2221616 3.49 2301900 26 81089 2238129 3.50 2319218 27 78684 2270661 3.35 2349345 28 78902 2256948 3.38 2335850 29 77762 2263720 3.32 2341482 30 76232 2277960 3.24 2354192 31 77235 2264897 3.30 2342132 32 77672 2279197 3.30 2356869 33 75722 2291387 3.20 2367109 34 75755 2275479 3.22 2351234 35 75452 2299415 3.18 2374867 36 73507 2322338 3.07 2395845 37 74950 2307637 3.15 2382587 38 74208 2312867 3.11 2387075 39 72703 2323851 3.03 2396554 40 71960 2300778 3.03 2372738 41 72316 2299194 3.05 2371510 42 70900 2313595 2.97 2384495 43 70657 2291964 2.99 2362621 44 71288 2305556 3.00 2376844 45 70106 2325076 2.93 2395182 46 69815 2300338 2.95 2370153 47 70706 2313251 2.97 2383957 48 69662 2319220 2.92 2388882 49 68860 2296408 2.91 2365268 50 69440 2298698 2.93 2368138 51 68259 2300609 2.88 2368868 52 68708 2272244 2.94 2340952 53 68558 2266386 2.94 2334944 54 67341 2267790 2.88 2335131 55 68048 2243955 2.94 2312003 56 67785 2246307 2.93 2314092 57 66617 2253064 2.87 2319681 58 66833 2218995 2.92 2285828 59 67497 2220368 2.95 2287865 60 66676 2222197 2.91 2288873 61 66534 2187576 2.95 2254110 62 66458 2176098 2.96 2242556 63 65740 2168816 2.94 2234556 64 65476 2134472 2.98 2199948 65 64781 2119406 2.97 2184187 66 64763 2121630 2.96 2186393 67 64773 2090196 3.01 2154969 68 65830 2077045 3.07 2142875 69 63620 2065010 2.99 2128630 70 64022 2037097 3.05 2101119 71 63836 2024893 3.06 2088729 72 62761 2003417 3.04 2066178 73 63443 1964954 3.13 2028397 74 62792 1948152 3.12 2010944 75 61628 1931552 3.09 1993180 76 61223 1902903 3.12 1964126 77 61443 1879084 3.17 1940527 78 60653 1871630 3.14 1932283 79 60055 1834773 3.17 1894828 80 60500 1815460 3.23 1875960 81 59271 1796576 3.19 1855847 82 59177 1760969 3.25 1820146 83 58746 1741733 3.26 1800479 84 58338 1727229 3.27 1785567 85 57559 1691982 3.29 1749541 86 57105 1671142 3.30 1728247 87 56163 1648900 3.29 1705063 88 56118 1619528 3.35 1675646 89 56633 1599257 3.42 1655890 90 54832 1570408 3.37 1625240 91 55072 1538722 3.46 1593794 92 55083 1518057 3.50 1573140 93 53551 1498427 3.45 1551978 94 52827 1465866 3.48 1518693 95 52235 1444100 3.49 1496335 96 51823 1430225 3.50 1482048 97 51101 1392982 3.54 1444083 98 50588 1372252 3.56 1422840 99 50599 1350845 3.61 1401444 100 49658 1314359 3.64 1364017 101 49458 1297370 3.67 1346828 102 48176 1274517 3.64 1322693 103 47859 1245389 3.70 1293248 104 47065 1224003 3.70 1271068 105 46481 1208182 3.70 1254663 106 45430 1176240 3.72 1221670 107 45309 1159677 3.76 1204986 108 44322 1136511 3.75 1180833 109 43502 1113929 3.76 1157431 110 43337 1093696 3.81 1137033 111 42942 1075728 3.84 1118670 112 42588 1045680 3.91 1088268 113 41783 1031001 3.89 1072784 114 40715 1008816 3.88 1049531 115 40214 983621 3.93 1023835 116 39896 968530 3.96 1008426 117 39433 949508 3.99 988941 118 39104 929689 4.04 968793 119 38162 910672 4.02 948834 120 37784 896173 4.05 933957 121 37240 871350 4.10 908590 122 36474 855365 4.09 891839 123 35655 839054 4.08 874709 124 35249 818003 4.13 853252 125 35202 800241 4.21 835443 126 34207 783838 4.18 818045 127 33533 764108 4.20 797641 128 33257 747060 4.26 780317 129 32776 734291 4.27 767067 130 32070 716647 4.28 748717 131 31719 700399 4.33 732118 132 30634 686440 4.27 717074 133 30413 667634 4.36 698047 134 29853 655991 4.35 685844 135 29352 640625 4.38 669977 136 28902 624328 4.42 653230 137 28305 610265 4.43 638570 138 27678 599656 4.41 627334 139 27271 580060 4.49 607331 140 26936 568196 4.53 595132 141 25913 556771 4.45 582684 142 25716 542466 4.53 568182 143 25154 528551 4.54 553705 144 24652 517817 4.54 542469 145 24354 504159 4.61 528513 146 23905 493748 4.62 517653 147 24095 487111 4.71 511206 148 24275 477869 4.83 502144 149 26409 470632 5.31 497041 150 23657 459572 4.90 483229 151 23173 426199 5.16 449372 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 599069 5116402 10.48 5715471 2 361590 1744109 17.17 2105699 3 235812 2565790 8.42 2801602 4 207031 2181484 8.67 2388515 5 78468 3009960 2.54 3088428 6 74113 3707664 1.96 3781777 7 68979 2424109 2.77 2493088 8 65492 2422530 2.63 2488022 9 60864 2422368 2.45 2483232 10 67147 2374615 2.75 2441762 11 66051 2436112 2.64 2502163 12 54152 2515615 2.11 2569767 13 50319 2561778 1.93 2612097 14 55857 2548352 2.14 2604209 15 48552 2550788 1.87 2599340 16 52107 2552824 2.00 2604931 17 44118 2625394 1.65 2669512 18 40399 2612032 1.52 2652431 19 39606 2642611 1.48 2682217 20 40049 2616296 1.51 2656345 21 37534 2653428 1.39 2690962 22 36364 2683209 1.34 2719573 23 35312 2668014 1.31 2703326 24 33668 2680848 1.24 2714516 25 32948 2716439 1.20 2749387 26 32050 2682840 1.18 2714890 27 30756 2705035 1.12 2735791 28 30469 2726053 1.11 2756522 29 29474 2715634 1.07 2745108 30 28292 2711492 1.03 2739784 31 27920 2733217 1.01 2761137 32 26900 2734803 0.97 2761703 33 26476 2759802 0.95 2786278 34 25440 2735016 0.92 2760456 35 25257 2756418 0.91 2781675 36 24477 2756423 0.88 2780900 37 24191 2777710 0.86 2801901 38 23161 2748874 0.84 2772035 39 22749 2756001 0.82 2778750 40 22213 2766983 0.80 2789196 41 21948 2766207 0.79 2788155 42 21327 2760896 0.77 2782223 43 21238 2774835 0.76 2796073 44 20952 2767094 0.75 2788046 45 20580 2787395 0.73 2807975 46 20306 2782844 0.72 2803150 47 20543 2759041 0.74 2779584 48 20267 2772074 0.73 2792341 49 19967 2779485 0.71 2799452 50 19794 2750407 0.71 2770201 51 19428 2745309 0.70 2764737 52 19567 2758982 0.70 2778549 53 19774 2748599 0.71 2768373 54 19764 2730469 0.72 2750233 55 19593 2723414 0.71 2743007 56 19431 2706791 0.71 2726222 57 19637 2710382 0.72 2730019 58 19783 2692534 0.73 2712317 59 20103 2672062 0.75 2692165 60 20102 2660982 0.75 2681084 61 20650 2644784 0.77 2665434 62 20245 2618722 0.77 2638967 63 21307 2611683 0.81 2632990 64 21200 2596876 0.81 2618076 65 21180 2562534 0.82 2583714 66 21118 2545951 0.82 2567069 67 21602 2539640 0.84 2561242 68 22064 2507337 0.87 2529401 69 22087 2488398 0.88 2510485 70 22568 2453921 0.91 2476489 71 22684 2434873 0.92 2457557 72 22996 2412247 0.94 2435243 73 23474 2383410 0.98 2406884 74 23529 2345664 0.99 2369193 75 23514 2329736 1.00 2353250 76 23470 2301698 1.01 2325168 77 24023 2275308 1.04 2299331 78 24416 2246617 1.08 2271033 79 24700 2227018 1.10 2251718 80 24461 2182328 1.11 2206789 81 24743 2170653 1.13 2195396 82 25273 2129475 1.17 2154748 83 25036 2097003 1.18 2122039 84 25327 2074004 1.21 2099331 85 25115 2054703 1.21 2079818 86 25267 2017225 1.24 2042492 87 25399 1991172 1.26 2016571 88 25639 1957011 1.29 1982650 89 25663 1925241 1.32 1950904 90 25627 1902735 1.33 1928362 91 25874 1866379 1.37 1892253 92 26043 1832697 1.40 1858740 93 25887 1811667 1.41 1837554 94 26157 1771727 1.45 1797884 95 26110 1745351 1.47 1771461 96 26006 1720935 1.49 1746941 97 26157 1695777 1.52 1721934 98 26117 1654481 1.55 1680598 99 25876 1630413 1.56 1656289 100 26043 1595866 1.61 1621909 101 25373 1567925 1.59 1593298 102 25520 1538970 1.63 1564490 103 25677 1511524 1.67 1537201 104 25448 1478432 1.69 1503880 105 25302 1453855 1.71 1479157 106 24849 1426279 1.71 1451128 107 24822 1398388 1.74 1423210 108 24866 1375533 1.78 1400399 109 24957 1349464 1.82 1374421 110 24323 1317695 1.81 1342018 111 24530 1294988 1.86 1319518 112 24628 1267850 1.91 1292478 113 24187 1241929 1.91 1266116 114 24122 1215274 1.95 1239396 115 23821 1189592 1.96 1213413 116 23733 1168318 1.99 1192051 117 23599 1148497 2.01 1172096 118 23308 1120040 2.04 1143348 119 22830 1096849 2.04 1119679 120 22794 1072710 2.08 1095504 121 22876 1057252 2.12 1080128 122 22510 1026391 2.15 1048901 123 22178 1010001 2.15 1032179 124 21923 984030 2.18 1005953 125 21684 965940 2.20 987624 126 21771 945117 2.25 966888 127 21289 925932 2.25 947221 128 20829 901532 2.26 922361 129 20830 885323 2.30 906153 130 20443 861018 2.32 881461 131 20238 842408 2.35 862646 132 20273 824370 2.40 844643 133 19682 808971 2.38 828653 134 19636 785525 2.44 805161 135 19375 767550 2.46 786925 136 18977 749620 2.47 768597 137 18865 734205 2.51 753070 138 18496 715727 2.52 734223 139 18391 700669 2.56 719060 140 17885 682123 2.55 700008 141 17754 667988 2.59 685742 142 17478 653079 2.61 670557 143 16950 634932 2.60 651882 144 17165 619982 2.69 637147 145 17016 606030 2.73 623046 146 17006 596459 2.77 613465 147 17034 586084 2.82 603118 148 17140 572711 2.91 589851 149 17871 560892 3.09 578763 150 20517 564793 3.51 585310 151 25728 514172 4.77 539900 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1996000 5511858 26.59 7507858 2 1853122 6994910 20.94 8848032 3 1380029 6782362 16.91 8162391 4 1284922 6405148 16.71 7690070 5 530951 7782369 6.39 8313320 6 489279 8503056 5.44 8992335 7 466268 9491454 4.68 9957722 8 423709 9391454 4.32 9815163 9 402751 9159914 4.21 9562665 10 381401 9044454 4.05 9425855 11 378817 8993246 4.04 9372063 12 341276 8947438 3.67 9288714 13 327881 8946177 3.54 9274058 14 317736 8912228 3.44 9229964 15 312330 8863638 3.40 9175968 16 308124 8838111 3.37 9146235 17 287518 8761788 3.18 9049306 18 267316 8723392 2.97 8990708 19 267605 8684332 2.99 8951937 20 269930 8707187 3.01 8977117 21 249776 8695295 2.79 8945071 22 245113 8668559 2.75 8913672 23 242011 8705737 2.70 8947748 24 224718 8703474 2.52 8928192 25 222125 8704924 2.49 8927049 26 220385 8719361 2.47 8939746 27 214776 8742892 2.40 8957668 28 207688 8791519 2.31 8999207 29 205566 8827282 2.28 9032848 30 195355 8835111 2.16 9030466 31 197317 8849901 2.18 9047218 32 189981 8912035 2.09 9102016 33 183056 8935676 2.01 9118732 34 180567 8957606 1.98 9138173 35 178418 9000736 1.94 9179154 36 170237 9001994 1.86 9172231 37 168234 9040959 1.83 9209193 38 163786 9062920 1.78 9226706 39 162960 9082942 1.76 9245902 40 155554 9119037 1.68 9274591 41 154753 9158455 1.66 9313208 42 146230 9166179 1.57 9312409 43 148818 9172571 1.60 9321389 44 144308 9200459 1.54 9344767 45 137470 9176623 1.48 9314093 46 136121 9164153 1.46 9300274 47 135603 9166515 1.46 9302118 48 129141 9195632 1.38 9324773 49 128335 9178853 1.38 9307188 50 126834 9160179 1.37 9287013 51 125199 9161769 1.35 9286968 52 121931 9160186 1.31 9282117 53 120974 9145190 1.31 9266164 54 116124 9101149 1.26 9217273 55 120652 9081697 1.31 9202349 56 114816 9019333 1.26 9134149 57 115597 8984516 1.27 9100113 58 115825 8929728 1.28 9045553 59 117280 8884855 1.30 9002135 60 113338 8843687 1.27 8957025 61 115321 8797523 1.29 8912844 62 113675 8738323 1.28 8851998 63 115982 8678811 1.32 8794793 64 115012 8617733 1.32 8732745 65 115961 8557740 1.34 8673701 66 113541 8469265 1.32 8582806 67 116930 8380340 1.38 8497270 68 115379 8314068 1.37 8429447 69 116973 8222954 1.40 8339927 70 115597 8139671 1.40 8255268 71 119762 8082715 1.46 8202477 72 116838 7991788 1.44 8108626 73 120272 7885648 1.50 8005920 74 120575 7798630 1.52 7919205 75 119666 7729466 1.52 7849132 76 120928 7633032 1.56 7753960 77 121725 7545523 1.59 7667248 78 121302 7439802 1.60 7561104 79 124424 7325648 1.67 7450072 80 122689 7234973 1.67 7357662 81 123479 7149860 1.70 7273339 82 123215 7047988 1.72 7171203 83 126033 6948686 1.78 7074719 84 123166 6855253 1.76 6978419 85 124933 6759256 1.81 6884189 86 125096 6662901 1.84 6787997 87 125673 6564112 1.88 6689785 88 126195 6455800 1.92 6581995 89 126205 6359427 1.95 6485632 90 126751 6268971 1.98 6395722 91 127698 6168040 2.03 6295738 92 127946 6068158 2.06 6196104 93 126628 5963558 2.08 6090186 94 126407 5856803 2.11 5983210 95 127133 5757383 2.16 5884516 96 124299 5658137 2.15 5782436 97 124507 5560410 2.19 5684917 98 124953 5471224 2.23 5596177 99 124619 5372211 2.27 5496830 100 124168 5273218 2.30 5397386 101 123448 5176617 2.33 5300065 102 122402 5072277 2.36 5194679 103 122696 4977579 2.41 5100275 104 122269 4888632 2.44 5010901 105 121445 4792546 2.47 4913991 106 120508 4703436 2.50 4823944 107 120748 4620818 2.55 4741566 108 118398 4519978 2.55 4638376 109 118648 4425673 2.61 4544321 110 117105 4337988 2.63 4455093 111 117460 4257532 2.68 4374992 112 115003 4176788 2.68 4291791 113 115191 4081409 2.74 4196600 114 113028 3993254 2.75 4106282 115 112475 3912103 2.79 4024578 116 112017 3838826 2.84 3950843 117 110351 3764786 2.85 3875137 118 110054 3683693 2.90 3793747 119 108998 3607956 2.93 3716954 120 107268 3532028 2.95 3639296 121 107611 3454361 3.02 3561972 122 105867 3388630 3.03 3494497 123 105480 3318725 3.08 3424205 124 104090 3237048 3.12 3341138 125 103498 3172730 3.16 3276228 126 100474 3104288 3.14 3204762 127 100308 3040330 3.19 3140638 128 99247 2970784 3.23 3070031 129 97879 2905693 3.26 3003572 130 96649 2835494 3.30 2932143 131 95501 2779340 3.32 2874841 132 94663 2717072 3.37 2811735 133 92946 2653504 3.38 2746450 134 91736 2596310 3.41 2688046 135 91579 2531051 3.49 2622630 136 90365 2478083 3.52 2568448 137 89169 2420654 3.55 2509823 138 87607 2366641 3.57 2454248 139 87208 2310840 3.64 2398048 140 85217 2256106 3.64 2341323 141 83772 2204826 3.66 2288598 142 82888 2155172 3.70 2238060 143 82155 2108227 3.75 2190382 144 82186 2059903 3.84 2142089 145 81615 2015607 3.89 2097222 146 81236 1984425 3.93 2065661 147 81697 1950478 4.02 2032175 148 82260 1914335 4.12 1996595 149 83169 1873909 4.25 1957078 150 85111 1871096 4.35 1956207 151 105694 1716727 5.80 1822421 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 67085 285993 19.00 353078 2 64972 531495 10.89 596467 3 57327 563233 9.24 620560 4 45138 415671 9.80 460809 5 22697 584542 3.74 607239 6 18485 335928 5.22 354413 7 18339 319581 5.43 337920 8 18634 311466 5.64 330100 9 17528 302339 5.48 319867 10 18023 291034 5.83 309057 11 19072 293040 6.11 312112 12 18882 288527 6.14 307409 13 16507 280399 5.56 296906 14 15983 277651 5.44 293634 15 15713 276851 5.37 292564 16 15075 266221 5.36 281296 17 14324 263746 5.15 278070 18 13571 264207 4.89 277778 19 13519 249514 5.14 263033 20 12957 246925 4.99 259882 21 12510 246193 4.84 258703 22 12103 238033 4.84 250136 23 11882 235486 4.80 247368 24 10804 229100 4.50 239904 25 10705 224675 4.55 235380 26 10482 221987 4.51 232469 27 9938 219020 4.34 228958 28 9736 210682 4.42 220418 29 9436 207995 4.34 217431 30 8732 202819 4.13 211551 31 8557 198390 4.13 206947 32 8428 195136 4.14 203564 33 7885 191603 3.95 199488 34 7513 184319 3.92 191832 35 7467 182717 3.93 190184 36 7106 180533 3.79 187639 37 6853 174386 3.78 181239 38 6770 172229 3.78 178999 39 6403 169056 3.65 175459 40 6070 162302 3.61 168372 41 5906 159311 3.57 165217 42 5521 157567 3.39 163088 43 5302 152473 3.36 157775 44 5298 150045 3.41 155343 45 4865 148075 3.18 152940 46 4754 143158 3.21 147912 47 4840 141480 3.31 146320 48 4549 137426 3.20 141975 49 4239 134347 3.06 138586 50 4225 132855 3.08 137080 51 3996 130263 2.98 134259 52 3961 126480 3.04 130441 53 3862 123689 3.03 127551 54 3701 120575 2.98 124276 55 3572 117368 2.95 120940 56 3472 115904 2.91 119376 57 3355 114485 2.85 117840 58 3160 109931 2.79 113091 59 3241 109157 2.88 112398 60 3037 106515 2.77 109552 61 2935 103539 2.76 106474 62 2895 102135 2.76 105030 63 2733 99871 2.66 102604 64 2642 95978 2.68 98620 65 2584 94161 2.67 96745 66 2658 92969 2.78 95627 67 2451 90274 2.64 92725 68 2554 87146 2.85 89700 69 2466 85686 2.80 88152 70 2565 83203 2.99 85768 71 2331 83487 2.72 85818 72 2254 80357 2.73 82611 73 2264 77307 2.85 79571 74 2157 76437 2.74 78594 75 2064 75046 2.68 77110 76 1995 72274 2.69 74269 77 1974 69911 2.75 71885 78 1925 69515 2.69 71440 79 1854 66695 2.70 68549 80 1918 66378 2.81 68296 81 1781 64742 2.68 66523 82 1752 62137 2.74 63889 83 1771 61271 2.81 63042 84 1727 60175 2.79 61902 85 1658 58022 2.78 59680 86 1673 56938 2.85 58611 87 1643 54847 2.91 56490 88 1573 53927 2.83 55500 89 1415 52902 2.61 54317 90 1511 51726 2.84 53237 91 1457 50669 2.80 52126 92 1422 48921 2.82 50343 93 1337 47901 2.72 49238 94 1302 46491 2.72 47793 95 1329 46417 2.78 47746 96 1264 45455 2.71 46719 97 1278 43442 2.86 44720 98 1292 42240 2.97 43532 99 1325 41651 3.08 42976 100 1132 39970 2.75 41102 101 1132 39190 2.81 40322 102 1113 38643 2.80 39756 103 1169 37472 3.03 38641 104 1083 36347 2.89 37430 105 1024 35881 2.77 36905 106 993 34331 2.81 35324 107 981 34479 2.77 35460 108 928 33140 2.72 34068 109 935 32144 2.83 33079 110 933 31923 2.84 32856 111 917 31439 2.83 32356 112 864 30380 2.77 31244 113 904 30110 2.91 31014 114 851 28949 2.86 29800 115 836 28312 2.87 29148 116 853 27961 2.96 28814 117 781 27208 2.79 27989 118 728 26586 2.67 27314 119 726 25933 2.72 26659 120 787 25762 2.96 26549 121 763 24631 3.00 25394 122 749 24239 3.00 24988 123 712 23671 2.92 24383 124 695 23378 2.89 24073 125 689 22514 2.97 23203 126 632 21835 2.81 22467 127 670 21429 3.03 22099 128 604 21085 2.78 21689 129 663 20734 3.10 21397 130 604 19836 2.95 20440 131 629 19250 3.16 19879 132 610 19046 3.10 19656 133 559 18841 2.88 19400 134 588 18021 3.16 18609 135 560 17889 3.04 18449 136 536 17519 2.97 18055 137 523 16947 2.99 17470 138 537 16629 3.13 17166 139 520 15749 3.20 16269 140 487 15554 3.04 16041 141 498 15371 3.14 15869 142 480 14779 3.15 15259 143 435 15035 2.81 15470 144 450 14489 3.01 14939 145 466 13757 3.28 14223 146 406 13626 2.89 14032 147 441 13415 3.18 13856 148 418 13047 3.10 13465 149 442 12803 3.34 13245 150 367 11947 2.98 12314 151 234 9680 2.36 9914 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 122616 1144858 9.67 1267474 2 62646 296497 17.44 359143 3 46790 428478 9.84 475268 4 40856 380072 9.71 420928 5 16582 555926 2.90 572508 6 15774 700811 2.20 716585 7 14585 386711 3.63 401296 8 14068 374391 3.62 388459 9 13601 364169 3.60 377770 10 14189 344042 3.96 358231 11 14720 341615 4.13 356335 12 11761 341730 3.33 353491 13 11174 342967 3.16 354141 14 10884 327153 3.22 338037 15 10311 321870 3.10 332181 16 10026 315664 3.08 325690 17 9422 314137 2.91 323559 18 8716 304646 2.78 313362 19 8521 301275 2.75 309796 20 8201 289457 2.76 297658 21 7719 288147 2.61 295866 22 7313 283440 2.52 290753 23 6858 275062 2.43 281920 24 6560 270161 2.37 276721 25 6258 267476 2.29 273734 26 5926 256114 2.26 262040 27 5559 253309 2.15 258868 28 5223 250825 2.04 256048 29 5084 242948 2.05 248032 30 4645 237216 1.92 241861 31 4581 232868 1.93 237449 32 4302 227472 1.86 231774 33 4165 224707 1.82 228872 34 3861 216308 1.75 220169 35 3673 212390 1.70 216063 36 3286 208283 1.55 211569 37 3215 205866 1.54 209081 38 3107 199102 1.54 202209 39 2825 195330 1.43 198155 40 2728 191911 1.40 194639 41 2588 187645 1.36 190233 42 2324 182206 1.26 184530 43 2307 180264 1.26 182571 44 2223 174835 1.26 177058 45 2038 173229 1.16 175267 46 1940 169926 1.13 171866 47 1719 164445 1.03 166164 48 1618 161683 0.99 163301 49 1583 159607 0.98 161190 50 1440 154568 0.92 156008 51 1474 151924 0.96 153398 52 1315 149458 0.87 150773 53 1226 145858 0.83 147084 54 1118 142042 0.78 143160 55 1080 139344 0.77 140424 56 1003 136039 0.73 137042 57 916 133017 0.68 133933 58 990 130728 0.75 131718 59 928 128000 0.72 128928 60 804 124179 0.64 124983 61 801 122292 0.65 123093 62 781 118274 0.66 119055 63 761 116553 0.65 117314 64 706 114703 0.61 115409 65 720 110935 0.64 111655 66 642 107732 0.59 108374 67 642 106897 0.60 107539 68 629 104953 0.60 105582 69 638 101382 0.63 102020 70 594 98113 0.60 98707 71 643 96252 0.66 96895 72 620 93953 0.66 94573 73 601 92037 0.65 92638 74 547 88891 0.61 89438 75 583 87466 0.66 88049 76 510 85599 0.59 86109 77 508 83361 0.61 83869 78 495 81218 0.61 81713 79 448 79025 0.56 79473 80 482 77242 0.62 77724 81 509 77698 0.65 78207 82 467 73236 0.63 73703 83 458 71381 0.64 71839 84 453 69510 0.65 69963 85 462 68666 0.67 69128 86 415 66785 0.62 67200 87 425 64721 0.65 65146 88 437 63761 0.68 64198 89 400 61247 0.65 61647 90 412 60155 0.68 60567 91 407 58729 0.69 59136 92 406 57537 0.70 57943 93 371 56519 0.65 56890 94 361 54493 0.66 54854 95 327 53567 0.61 53894 96 347 52604 0.66 52951 97 332 51303 0.64 51635 98 360 49318 0.72 49678 99 338 47922 0.70 48260 100 317 46598 0.68 46915 101 323 46138 0.70 46461 102 315 44577 0.70 44892 103 345 44360 0.77 44705 104 339 42746 0.79 43085 105 307 41948 0.73 42255 106 278 41034 0.67 41312 107 297 39455 0.75 39752 108 285 38961 0.73 39246 109 284 38503 0.73 38787 110 259 37086 0.69 37345 111 282 36473 0.77 36755 112 264 35815 0.73 36079 113 256 34358 0.74 34614 114 226 33861 0.66 34087 115 244 32717 0.74 32961 116 228 32079 0.71 32307 117 252 32272 0.77 32524 118 236 30660 0.76 30896 119 246 29431 0.83 29677 120 218 29064 0.74 29282 121 221 28864 0.76 29085 122 219 27810 0.78 28029 123 220 27445 0.80 27665 124 204 26510 0.76 26714 125 202 25929 0.77 26131 126 220 25618 0.85 25838 127 237 25225 0.93 25462 128 201 23935 0.83 24136 129 202 24077 0.83 24279 130 176 23118 0.76 23294 131 177 22407 0.78 22584 132 188 21891 0.85 22079 133 170 21631 0.78 21801 134 171 21008 0.81 21179 135 181 20207 0.89 20388 136 179 20019 0.89 20198 137 160 19352 0.82 19512 138 170 19116 0.88 19286 139 169 18675 0.90 18844 140 175 17979 0.96 18154 141 164 17953 0.91 18117 142 135 17337 0.77 17472 143 166 16835 0.98 17001 144 150 16513 0.90 16663 145 141 16234 0.86 16375 146 157 15578 1.00 15735 147 145 15429 0.93 15574 148 137 14914 0.91 15051 149 147 14374 1.01 14521 150 107 13993 0.76 14100 151 100 11111 0.89 11211 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 330324 918240 26.46 1248564 2 320022 1295863 19.80 1615885 3 246793 1113906 18.14 1360699 4 227484 988044 18.71 1215528 5 97601 1295259 7.01 1392860 6 90546 1402392 6.06 1492938 7 86629 1578150 5.20 1664779 8 84799 1512111 5.31 1596910 9 79049 1427023 5.25 1506072 10 76967 1358208 5.36 1435175 11 76167 1309175 5.50 1385342 12 68492 1261640 5.15 1330132 13 63872 1241228 4.89 1305100 14 61084 1207424 4.82 1268508 15 60463 1175379 4.89 1235842 16 57953 1150700 4.79 1208653 17 52750 1116455 4.51 1169205 18 49378 1086656 4.35 1136034 19 48770 1058568 4.40 1107338 20 46680 1036095 4.31 1082775 21 42980 1005993 4.10 1048973 22 41335 986015 4.02 1027350 23 42130 972074 4.15 1014204 24 36900 945191 3.76 982091 25 35821 923225 3.74 959046 26 34084 903568 3.64 937652 27 33513 883933 3.65 917446 28 31202 869259 3.47 900461 29 30790 852116 3.49 882906 30 28337 829767 3.30 858104 31 28393 809922 3.39 838315 32 26762 798686 3.24 825448 33 24798 780748 3.08 805546 34 24393 761639 3.10 786032 35 24573 749641 3.17 774214 36 22010 731137 2.92 753147 37 21323 720000 2.88 741323 38 20279 707225 2.79 727504 39 20258 688544 2.86 708802 40 18690 677760 2.68 696450 41 18643 663646 2.73 682289 42 16541 650976 2.48 667517 43 17465 634244 2.68 651709 44 16637 624457 2.60 641094 45 15365 610457 2.46 625822 46 15066 598247 2.46 613313 47 14807 585016 2.47 599823 48 13420 576032 2.28 589452 49 12721 563811 2.21 576532 50 12499 553960 2.21 566459 51 12606 542284 2.27 554890 52 11778 532353 2.16 544131 53 11395 521885 2.14 533280 54 9912 511281 1.90 521193 55 10579 499192 2.08 509771 56 9651 487292 1.94 496943 57 9303 477829 1.91 487132 58 9271 466062 1.95 475333 59 9652 456714 2.07 466366 60 8285 445743 1.82 454028 61 7943 435922 1.79 443865 62 7669 426173 1.77 433842 63 7754 417904 1.82 425658 64 7414 408008 1.78 415422 65 7716 400527 1.89 408243 66 6588 387601 1.67 394189 67 7103 378509 1.84 385612 68 6459 369900 1.72 376359 69 6419 360271 1.75 366690 70 6252 351350 1.75 357602 71 6949 343661 1.98 350610 72 6094 335995 1.78 342089 73 5870 326055 1.77 331925 74 6070 318067 1.87 324137 75 5859 311763 1.84 317622 76 5784 304071 1.87 309855 77 5708 298702 1.88 304410 78 5184 288075 1.77 293259 79 5851 281525 2.04 287376 80 5140 277173 1.82 282313 81 5081 269320 1.85 274401 82 4962 263453 1.85 268415 83 5515 256391 2.11 261906 84 4765 251126 1.86 255891 85 4648 243250 1.87 247898 86 4902 240900 1.99 245802 87 4927 234089 2.06 239016 88 4635 229068 1.98 233703 89 4545 224126 1.99 228671 90 4296 218616 1.93 222912 91 4374 213096 2.01 217470 92 4185 209359 1.96 213544 93 4210 202616 2.04 206826 94 4054 197255 2.01 201309 95 4471 192096 2.27 196567 96 3651 188436 1.90 192087 97 3751 185211 1.99 188962 98 3658 181216 1.98 184874 99 3946 175811 2.20 179757 100 3808 171774 2.17 175582 101 3578 168641 2.08 172219 102 3350 164109 2.00 167459 103 3408 161121 2.07 164529 104 3307 157085 2.06 160392 105 3099 153253 1.98 156352 106 3332 149435 2.18 152767 107 3537 144927 2.38 148464 108 2984 142244 2.05 145228 109 3015 138301 2.13 141316 110 2852 135520 2.06 138372 111 3074 132049 2.27 135123 112 2774 130189 2.09 132963 113 2886 125380 2.25 128266 114 2738 123065 2.18 125803 115 2767 119676 2.26 122443 116 2709 117227 2.26 119936 117 2471 115438 2.10 117909 118 2527 112301 2.20 114828 119 2659 109901 2.36 112560 120 2362 106801 2.16 109163 121 2609 104221 2.44 106830 122 2348 102117 2.25 104465 123 2350 99041 2.32 101391 124 2179 96737 2.20 98916 125 2261 94933 2.33 97194 126 2044 92592 2.16 94636 127 2309 91066 2.47 93375 128 2155 89525 2.35 91680 129 2064 86370 2.33 88434 130 2008 84744 2.31 86752 131 2045 82997 2.40 85042 132 1879 81022 2.27 82901 133 1947 79417 2.39 81364 134 1927 77177 2.44 79104 135 1845 75793 2.38 77638 136 1821 74562 2.38 76383 137 1802 72092 2.44 73894 138 1602 70109 2.23 71711 139 1727 68579 2.46 70306 140 1559 67214 2.27 68773 141 1599 65662 2.38 67261 142 1618 64242 2.46 65860 143 1639 63088 2.53 64727 144 1509 61176 2.41 62685 145 1447 59683 2.37 61130 146 1455 58387 2.43 59842 147 1409 57495 2.39 58904 148 1366 56141 2.38 57507 149 1318 54211 2.37 55529 150 1054 51393 2.01 52447 151 962 41848 2.25 42810