[2025-05-01 06:14:17,333] multiqc [DEBUG ] This is MultiQC v1.12 [2025-05-01 06:14:17,337] multiqc [DEBUG ] No MultiQC config found: /modules/uri_apps/software/MultiQC/1.12-foss-2021b/lib/python3.9/site-packages/multiqc_config.yaml [2025-05-01 06:14:17,338] multiqc [DEBUG ] No MultiQC config found: /home/zdellaert_uri_edu/.multiqc_config.yaml [2025-05-01 06:14:17,342] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2025-05-01 06:14:17,342] multiqc [DEBUG ] Command used: /modules/uri_apps/software/MultiQC/1.12-foss-2021b/bin/multiqc . [2025-05-01 06:14:17,784] multiqc [WARNING] MultiQC Version v1.28 now available! [2025-05-01 06:14:17,785] multiqc [DEBUG ] Command : /modules/uri_apps/software/MultiQC/1.12-foss-2021b/bin/multiqc . [2025-05-01 06:14:17,785] multiqc [DEBUG ] Working dir : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/F-Ptuh/output/12-Ptuh-WGBS/bismark_cutadapt [2025-05-01 06:14:17,785] multiqc [DEBUG ] Template : default [2025-05-01 06:14:17,785] multiqc [DEBUG ] Running Python 3.9.6 (default, Nov 15 2024, 16:57:16) [GCC 11.2.0] [2025-05-01 06:14:17,785] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2025-05-01 06:14:17,785] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpn07hxgee [2025-05-01 06:14:18,043] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/F-Ptuh/output/12-Ptuh-WGBS/bismark_cutadapt [2025-05-01 06:14:18,103] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POC-53-TP2_S15_PE_report.html [2025-05-01 06:14:18,104] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POC-53-TP2_S15_PE_report.html [2025-05-01 06:14:18,104] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POC-53-TP2_S15_PE_report.html [2025-05-01 06:14:18,106] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: trimmed_POC-53-TP2_S15_PE_report.html [2025-05-01 06:14:18,106] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POC-53-TP2_S15_PE_report.html [2025-05-01 06:14:18,106] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POC-53-TP2_S15_PE_report.html [2025-05-01 06:14:18,106] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POC-53-TP2_S15_PE_report.html [2025-05-01 06:14:18,106] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POC-53-TP2_S15_PE_report.html [2025-05-01 06:14:18,106] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POC-53-TP2_S15_PE_report.html [2025-05-01 06:14:18,106] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POC-53-TP2_S15_PE_report.html [2025-05-01 06:14:18,106] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POC-53-TP2_S15_PE_report.html [2025-05-01 06:14:18,112] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: trimmed_POC-53-TP2_S15_PE_report.html [2025-05-01 06:14:18,424] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POC-53-TP2_S15_PE_report.html [2025-05-01 06:14:18,451] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POC-48-TP2_S11_PE_report.html [2025-05-01 06:14:18,451] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POC-48-TP2_S11_PE_report.html [2025-05-01 06:14:18,452] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POC-48-TP2_S11_PE_report.html [2025-05-01 06:14:18,453] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: trimmed_POC-48-TP2_S11_PE_report.html [2025-05-01 06:14:18,453] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POC-48-TP2_S11_PE_report.html [2025-05-01 06:14:18,453] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POC-48-TP2_S11_PE_report.html [2025-05-01 06:14:18,453] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POC-48-TP2_S11_PE_report.html [2025-05-01 06:14:18,453] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POC-48-TP2_S11_PE_report.html [2025-05-01 06:14:18,453] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POC-48-TP2_S11_PE_report.html [2025-05-01 06:14:18,453] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POC-48-TP2_S11_PE_report.html [2025-05-01 06:14:18,453] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POC-48-TP2_S11_PE_report.html [2025-05-01 06:14:18,459] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: trimmed_POC-48-TP2_S11_PE_report.html [2025-05-01 06:14:18,773] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POC-48-TP2_S11_PE_report.html [2025-05-01 06:14:18,797] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_POC-48-TP2_S11_pe.deduplicated.bam [2025-05-01 06:14:18,798] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: POC-50-TP2_S14.sorted.bam [2025-05-01 06:14:18,798] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_POC-47-TP2_S13_pe.deduplicated.bam [2025-05-01 06:14:18,802] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POC-47-TP2_S13-bismark_summary.txt [2025-05-01 06:14:18,802] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POC-47-TP2_S13-bismark_summary.txt [2025-05-01 06:14:18,802] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POC-47-TP2_S13-bismark_summary.txt [2025-05-01 06:14:18,804] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POC-47-TP2_S13-bismark_summary.txt [2025-05-01 06:14:18,810] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POC-47-TP2_S13-bismark_summary.txt [2025-05-01 06:14:18,814] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: bismark_summary_report.txt [2025-05-01 06:14:18,814] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: bismark_summary_report.txt [2025-05-01 06:14:18,818] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_POC-47-TP2_S13_pe.bam [2025-05-01 06:14:18,819] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: POC-53-TP2_S15.sorted.bam [2025-05-01 06:14:18,823] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POC-48-TP2_S11-bismark_summary.txt [2025-05-01 06:14:18,824] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POC-48-TP2_S11-bismark_summary.txt [2025-05-01 06:14:18,824] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POC-48-TP2_S11-bismark_summary.txt [2025-05-01 06:14:18,825] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POC-48-TP2_S11-bismark_summary.txt [2025-05-01 06:14:18,833] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POC-48-TP2_S11-bismark_summary.txt [2025-05-01 06:14:18,834] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: POC-48-TP2_S11.sorted.bam [2025-05-01 06:14:18,837] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: POC-57-TP2_S12.cytosine_context_summary.txt [2025-05-01 06:14:18,838] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: POC-57-TP2_S12.cytosine_context_summary.txt [2025-05-01 06:14:18,842] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: POC-47-TP2_S13.sorted.bam [2025-05-01 06:14:18,846] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POC-50-TP2_S14-bismark_summary.txt [2025-05-01 06:14:18,847] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POC-50-TP2_S14-bismark_summary.txt [2025-05-01 06:14:18,847] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POC-50-TP2_S14-bismark_summary.txt [2025-05-01 06:14:18,849] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POC-50-TP2_S14-bismark_summary.txt [2025-05-01 06:14:18,856] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POC-50-TP2_S14-bismark_summary.txt [2025-05-01 06:14:18,861] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: POC-50-TP2_S14.cytosine_context_summary.txt [2025-05-01 06:14:18,862] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: POC-50-TP2_S14.cytosine_context_summary.txt [2025-05-01 06:14:18,866] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_POC-57-TP2_S12_pe.bam [2025-05-01 06:14:18,866] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_POC-57-TP2_S12_pe.deduplicated.bam [2025-05-01 06:14:18,866] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_POC-53-TP2_S15_pe.deduplicated.bam [2025-05-01 06:14:18,874] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POC-50-TP2_S14_PE_report.html [2025-05-01 06:14:18,875] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POC-50-TP2_S14_PE_report.html [2025-05-01 06:14:18,875] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POC-50-TP2_S14_PE_report.html [2025-05-01 06:14:18,877] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: trimmed_POC-50-TP2_S14_PE_report.html [2025-05-01 06:14:18,877] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POC-50-TP2_S14_PE_report.html [2025-05-01 06:14:18,877] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POC-50-TP2_S14_PE_report.html [2025-05-01 06:14:18,877] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POC-50-TP2_S14_PE_report.html [2025-05-01 06:14:18,877] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POC-50-TP2_S14_PE_report.html [2025-05-01 06:14:18,877] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POC-50-TP2_S14_PE_report.html [2025-05-01 06:14:18,877] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POC-50-TP2_S14_PE_report.html [2025-05-01 06:14:18,877] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POC-50-TP2_S14_PE_report.html [2025-05-01 06:14:18,884] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: trimmed_POC-50-TP2_S14_PE_report.html [2025-05-01 06:14:19,192] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POC-50-TP2_S14_PE_report.html [2025-05-01 06:14:19,214] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: POC-47-TP2_S13.cytosine_context_summary.txt [2025-05-01 06:14:19,215] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: POC-47-TP2_S13.cytosine_context_summary.txt [2025-05-01 06:14:19,219] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_POC-53-TP2_S15_pe.bam [2025-05-01 06:14:19,228] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POC-47-TP2_S13_PE_report.html [2025-05-01 06:14:19,229] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POC-47-TP2_S13_PE_report.html [2025-05-01 06:14:19,229] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POC-47-TP2_S13_PE_report.html [2025-05-01 06:14:19,231] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: trimmed_POC-47-TP2_S13_PE_report.html [2025-05-01 06:14:19,231] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POC-47-TP2_S13_PE_report.html [2025-05-01 06:14:19,231] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POC-47-TP2_S13_PE_report.html [2025-05-01 06:14:19,231] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POC-47-TP2_S13_PE_report.html [2025-05-01 06:14:19,231] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POC-47-TP2_S13_PE_report.html [2025-05-01 06:14:19,231] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POC-47-TP2_S13_PE_report.html [2025-05-01 06:14:19,231] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POC-47-TP2_S13_PE_report.html [2025-05-01 06:14:19,231] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POC-47-TP2_S13_PE_report.html [2025-05-01 06:14:19,238] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: trimmed_POC-47-TP2_S13_PE_report.html [2025-05-01 06:14:19,573] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POC-47-TP2_S13_PE_report.html [2025-05-01 06:14:19,591] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_POC-48-TP2_S11_pe.bam [2025-05-01 06:14:19,607] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 06:14:19,607] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 06:14:19,608] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 06:14:19,615] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 06:14:19,615] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 06:14:19,615] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 06:14:19,615] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 06:14:19,615] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 06:14:19,615] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 06:14:19,615] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 06:14:19,615] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 06:14:19,622] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 06:14:19,935] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: bismark_summary_report.html [2025-05-01 06:14:19,958] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POC-53-TP2_S15-bismark_summary.txt [2025-05-01 06:14:19,959] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POC-53-TP2_S15-bismark_summary.txt [2025-05-01 06:14:19,959] multiqc [DEBUG ] File ignored by lima/summary because it exceeded 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exceeded search pattern filesize limit: trimmed_POC-57-TP2_S12-bismark_summary.txt [2025-05-01 06:14:19,989] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POC-57-TP2_S12-bismark_summary.txt [2025-05-01 06:14:19,995] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: POC-48-TP2_S11.cytosine_context_summary.txt [2025-05-01 06:14:19,996] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: POC-48-TP2_S11.cytosine_context_summary.txt [2025-05-01 06:14:20,000] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_POC-50-TP2_S14_pe.bam [2025-05-01 06:14:20,001] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: POC-57-TP2_S12.sorted.bam [2025-05-01 06:14:20,001] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_POC-50-TP2_S14_pe.deduplicated.bam [2025-05-01 06:14:20,007] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: POC-53-TP2_S15.cytosine_context_summary.txt [2025-05-01 06:14:20,008] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: POC-53-TP2_S15.cytosine_context_summary.txt [2025-05-01 06:14:20,022] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POC-57-TP2_S12_PE_report.html [2025-05-01 06:14:20,023] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POC-57-TP2_S12_PE_report.html [2025-05-01 06:14:20,023] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POC-57-TP2_S12_PE_report.html [2025-05-01 06:14:20,024] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: trimmed_POC-57-TP2_S12_PE_report.html [2025-05-01 06:14:20,024] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POC-57-TP2_S12_PE_report.html [2025-05-01 06:14:20,024] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POC-57-TP2_S12_PE_report.html [2025-05-01 06:14:20,024] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POC-57-TP2_S12_PE_report.html [2025-05-01 06:14:20,024] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POC-57-TP2_S12_PE_report.html [2025-05-01 06:14:20,024] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POC-57-TP2_S12_PE_report.html [2025-05-01 06:14:20,024] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POC-57-TP2_S12_PE_report.html [2025-05-01 06:14:20,024] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POC-57-TP2_S12_PE_report.html [2025-05-01 06:14:20,031] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: trimmed_POC-57-TP2_S12_PE_report.html [2025-05-01 06:14:20,355] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POC-57-TP2_S12_PE_report.html [2025-05-01 06:14:20,377] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 06:14:20,378] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 06:14:20,378] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 06:14:20,380] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 06:14:20,403] 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06:14:20,544] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:20,545] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:20,552] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:20,560] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:20,560] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:20,561] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:20,562] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:20,574] multiqc [DEBUG ] File ignored by 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06:14:20,655] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 06:14:20,669] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pygments.css [2025-05-01 06:14:20,670] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pygments.css [2025-05-01 06:14:20,671] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2025-05-01 06:14:20,680] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: jquery.js [2025-05-01 06:14:20,681] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2025-05-01 06:14:20,681] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: jquery.js [2025-05-01 06:14:20,683] multiqc [DEBUG ] File ignored by 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limit: websupport.js [2025-05-01 06:14:20,709] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:20,709] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:20,711] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:20,722] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:20,727] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 06:14:20,728] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 06:14:20,728] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 06:14:20,729] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 06:14:20,738] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 06:14:20,742] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: underscore.js [2025-05-01 06:14:20,742] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2025-05-01 06:14:20,743] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: underscore.js [2025-05-01 06:14:20,744] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2025-05-01 06:14:20,747] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: underscore.js [2025-05-01 06:14:20,757] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:20,758] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:20,758] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:20,759] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:20,766] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:20,770] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: basic.css [2025-05-01 06:14:20,771] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2025-05-01 06:14:20,771] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 06:14:20,808] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 06:14:20,809] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 06:14:20,809] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 06:14:20,810] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 06:14:20,819] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 06:14:20,840] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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ignored by lima/summary because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 06:14:20,857] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 06:14:20,866] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 06:14:20,876] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 06:14:20,877] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 06:14:20,877] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 06:14:20,879] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 06:14:20,902] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 06:14:20,931] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 06:14:20,932] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 06:14:20,932] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 06:14:20,933] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 06:14:20,943] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 06:14:20,946] multiqc [DEBUG ] File ignored by 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[DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 06:14:20,983] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 06:14:21,004] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: underscore.js [2025-05-01 06:14:21,004] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2025-05-01 06:14:21,005] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: underscore.js [2025-05-01 06:14:21,006] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2025-05-01 06:14:21,009] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: underscore.js [2025-05-01 06:14:21,013] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: doctools.js [2025-05-01 06:14:21,013] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2025-05-01 06:14:21,014] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: doctools.js [2025-05-01 06:14:21,015] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2025-05-01 06:14:21,020] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: doctools.js [2025-05-01 06:14:21,023] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:21,023] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:21,024] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:21,025] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:21,032] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:21,036] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: basic.css [2025-05-01 06:14:21,037] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2025-05-01 06:14:21,037] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: basic.css [2025-05-01 06:14:21,038] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2025-05-01 06:14:21,046] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: basic.css [2025-05-01 06:14:21,064] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: jquery.js [2025-05-01 06:14:21,064] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2025-05-01 06:14:21,064] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: jquery.js [2025-05-01 06:14:21,066] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2025-05-01 06:14:21,073] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: jquery.js [2025-05-01 06:14:21,076] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pygments.css [2025-05-01 06:14:21,077] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pygments.css [2025-05-01 06:14:21,078] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2025-05-01 06:14:21,085] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:21,086] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:21,086] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:21,087] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:21,099] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:21,103] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 06:14:21,104] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 06:14:21,104] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 06:14:21,106] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 06:14:21,115] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 06:14:21,123] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 06:14:21,124] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 06:14:21,124] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 06:14:21,126] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 06:14:21,150] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 06:14:21,177] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pygments.css [2025-05-01 06:14:21,178] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pygments.css [2025-05-01 06:14:21,179] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2025-05-01 06:14:21,186] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: underscore.js [2025-05-01 06:14:21,187] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2025-05-01 06:14:21,187] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: underscore.js [2025-05-01 06:14:21,188] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2025-05-01 06:14:21,191] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: underscore.js [2025-05-01 06:14:21,197] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:21,198] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:21,198] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:21,200] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:21,207] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:21,212] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: basic.css [2025-05-01 06:14:21,213] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2025-05-01 06:14:21,213] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: basic.css [2025-05-01 06:14:21,214] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2025-05-01 06:14:21,222] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: basic.css [2025-05-01 06:14:21,225] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:21,226] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:21,226] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:21,228] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:21,240] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:21,244] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 06:14:21,245] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 06:14:21,245] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 06:14:21,246] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 06:14:21,255] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 06:14:21,258] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: doctools.js [2025-05-01 06:14:21,259] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2025-05-01 06:14:21,259] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: doctools.js [2025-05-01 06:14:21,260] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2025-05-01 06:14:21,265] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: doctools.js [2025-05-01 06:14:21,280] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: jquery.js [2025-05-01 06:14:21,281] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2025-05-01 06:14:21,281] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: jquery.js [2025-05-01 06:14:21,283] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2025-05-01 06:14:21,290] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: jquery.js [2025-05-01 06:14:21,302] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 06:14:21,303] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 06:14:21,303] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 06:14:21,304] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 06:14:21,309] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 06:14:21,312] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 06:14:21,313] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 06:14:21,313] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 06:14:21,315] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 06:14:21,323] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 06:14:21,335] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 06:14:21,336] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 06:14:21,336] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 06:14:21,338] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 06:14:21,347] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 06:14:21,350] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 06:14:21,351] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 06:14:21,351] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 06:14:21,353] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 06:14:21,362] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 06:14:21,374] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 06:14:21,374] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 06:14:21,375] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 06:14:21,376] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 06:14:21,401] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: qualimapReport.html [2025-05-01 06:14:21,409] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:21,410] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:21,410] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:21,412] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:21,424] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: websupport.js [2025-05-01 06:14:21,431] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:21,432] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:21,432] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:21,433] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:21,440] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: agogo.css [2025-05-01 06:14:21,444] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: basic.css [2025-05-01 06:14:21,445] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2025-05-01 06:14:21,445] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: basic.css [2025-05-01 06:14:21,446] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2025-05-01 06:14:21,454] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: basic.css [2025-05-01 06:14:21,458] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 06:14:21,458] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 06:14:21,459] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 06:14:21,460] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 06:14:21,469] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: searchtools.js [2025-05-01 06:14:21,472] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: pygments.css [2025-05-01 06:14:21,473] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: pygments.css [2025-05-01 06:14:21,474] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2025-05-01 06:14:21,496] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: doctools.js [2025-05-01 06:14:21,497] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2025-05-01 06:14:21,497] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: doctools.js [2025-05-01 06:14:21,499] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2025-05-01 06:14:21,504] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: doctools.js [2025-05-01 06:14:21,507] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: underscore.js [2025-05-01 06:14:21,508] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2025-05-01 06:14:21,508] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: underscore.js [2025-05-01 06:14:21,509] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2025-05-01 06:14:21,512] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: underscore.js [2025-05-01 06:14:21,515] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: jquery.js [2025-05-01 06:14:21,516] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2025-05-01 06:14:21,516] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: jquery.js [2025-05-01 06:14:21,517] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2025-05-01 06:14:21,524] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: jquery.js [2025-05-01 06:14:21,551] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 06:14:21,552] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 06:14:21,552] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 06:14:21,554] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 06:14:21,562] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2025-05-01 06:14:21,566] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 06:14:21,567] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 06:14:21,567] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 06:14:21,569] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 06:14:21,577] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2025-05-01 06:14:21,582] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 06:14:21,582] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 06:14:21,583] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 06:14:21,584] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 06:14:21,593] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: coverage_across_reference.txt [2025-05-01 06:14:21,597] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 06:14:21,598] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 06:14:21,598] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 06:14:21,600] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 06:14:21,604] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2025-05-01 06:14:24,036] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2025-05-01 06:14:24,053] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2025-05-01 06:14:24,099] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50 [2025-05-01 06:14:24,131] multiqc.modules.qualimap.qualimap [INFO ] Found 5 BamQC reports [2025-05-01 06:14:24,236] multiqc.modules.bismark.bismark [INFO ] Found 5 alignment reports [2025-05-01 06:14:24,239] multiqc.modules.bismark.bismark [INFO ] Found 5 dedup reports [2025-05-01 06:14:24,239] multiqc.modules.bismark.bismark [INFO ] Found 5 methextract reports [2025-05-01 06:14:24,247] multiqc.modules.bismark.bismark [INFO ] Found 5 bismark bam2nuc reports [2025-05-01 06:14:24,263] multiqc [INFO ] Compressing plot data [2025-05-01 06:14:24,447] multiqc [INFO ] Report : multiqc_report.html [2025-05-01 06:14:24,447] multiqc [INFO ] Data : multiqc_data [2025-05-01 06:14:24,447] multiqc [DEBUG ] Moving data file from '/tmp/tmpn07hxgee/multiqc_data' to '/scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/F-Ptuh/output/12-Ptuh-WGBS/bismark_cutadapt/multiqc_data' [2025-05-01 06:14:24,802] multiqc [INFO ] MultiQC complete