FastQCFastQC Report
Fri 11 Apr 2025
trimmed_POC-47-TP2_S13_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenametrimmed_POC-47-TP2_S13_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences151987190
Total Bases13.8 Gbp
Sequences flagged as poor quality0
Sequence length20-151
%GC25

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTGGTCGCCGTATCATTAGG6625140.43590120983222336No Hit
CGGTGGTCGCCGTATCATTAGGA4378160.28806111883508073No Hit
CGGTGGTCGCCGTATCATTAGGG3750630.2467727707841694No Hit
CGGTGGTCGCCGTATCATTAGGT2747150.18074878547330206No Hit
CGGTGGTCGCCGTATCATTAAG2699750.17763010158948264No Hit
CGGTGGTCGCCGTATCATTAGGC2602830.17125324838231434No Hit
CGGTGGTCGCCGTATCATTAGAG2265400.14905203524060154No Hit
CGGTGGTCGCCGTATCATTAGT2030860.13362047156737356No Hit
CGGTGGTCGCCGTATCATTA2000450.13161964505034932No Hit
CGGTGGTCGCCGTATCATTAGA1971800.129734617766142No Hit
CGGTGGTCGCCGTATCATTAG1719950.11316414232015212No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)