diamond v2.1.8.162 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
Documentation, support and updates available at http://www.diamondsearch.org
Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)

#CPU threads: 40
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: ../output/30.00-Peve-transcriptome-GOslims
#Target sequences to report alignments for: 1
Opening the database...  [0.082s]
Database: ../../M-multi-species/data/blastdbs/20250620-diamond.dmnd (type: Diamond database, sequences: 573661, letters: 207922125)
Block size = 15000000000
Opening the input file...  [0.038s]
Opening the output file...  [0s]
Loading query sequences...  [1.889s]
Masking queries...  [0.894s]
Algorithm: Double-indexed
Building query histograms...  [1.328s]
Seeking in database...  [0s]
Loading reference sequences...  [0.445s]
Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
Building reference seed array...  [0.152s]
Building query seed array...  [0.127s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.021s]
Searching alignments...  [0.251s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
Building reference seed array...  [0.162s]
Building query seed array...  [0.136s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.244s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
Building reference seed array...  [0.167s]
Building query seed array...  [0.135s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.25s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
Building reference seed array...  [0.129s]
Building query seed array...  [0.117s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.238s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
Building reference seed array...  [0.129s]
Building query seed array...  [0.116s]
Computing hash join...  [0.07s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.221s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
Building reference seed array...  [0.157s]
Building query seed array...  [0.131s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.218s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
Building reference seed array...  [0.161s]
Building query seed array...  [0.133s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.218s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
Building reference seed array...  [0.128s]
Building query seed array...  [0.115s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.22s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
Building reference seed array...  [0.131s]
Building query seed array...  [0.117s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.24s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
Building reference seed array...  [0.158s]
Building query seed array...  [0.134s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.236s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
Building reference seed array...  [0.163s]
Building query seed array...  [0.134s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.242s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
Building reference seed array...  [0.132s]
Building query seed array...  [0.117s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.235s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
Building reference seed array...  [0.129s]
Building query seed array...  [0.118s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.23s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
Building reference seed array...  [0.156s]
Building query seed array...  [0.139s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.246s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
Building reference seed array...  [0.164s]
Building query seed array...  [0.131s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.232s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
Building reference seed array...  [0.128s]
Building query seed array...  [0.124s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.232s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
Building reference seed array...  [0.129s]
Building query seed array...  [0.119s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.225s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
Building reference seed array...  [0.157s]
Building query seed array...  [0.133s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.223s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
Building reference seed array...  [0.158s]
Building query seed array...  [0.132s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.226s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
Building reference seed array...  [0.13s]
Building query seed array...  [0.117s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.227s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
Building reference seed array...  [0.13s]
Building query seed array...  [0.117s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.237s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
Building reference seed array...  [0.156s]
Building query seed array...  [0.133s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.232s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
Building reference seed array...  [0.17s]
Building query seed array...  [0.139s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.228s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
Building reference seed array...  [0.129s]
Building query seed array...  [0.117s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.228s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
Building reference seed array...  [0.132s]
Building query seed array...  [0.117s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.219s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
Building reference seed array...  [0.157s]
Building query seed array...  [0.135s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.215s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
Building reference seed array...  [0.161s]
Building query seed array...  [0.135s]
Computing hash join...  [0.07s]
Masking low complexity seeds...  [0.021s]
Searching alignments...  [0.221s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
Building reference seed array...  [0.128s]
Building query seed array...  [0.116s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.216s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
Building reference seed array...  [0.137s]
Building query seed array...  [0.119s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.226s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
Building reference seed array...  [0.154s]
Building query seed array...  [0.133s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.222s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
Building reference seed array...  [0.165s]
Building query seed array...  [0.13s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.223s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
Building reference seed array...  [0.128s]
Building query seed array...  [0.118s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.229s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
Building reference seed array...  [0.13s]
Building query seed array...  [0.122s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.021s]
Searching alignments...  [0.231s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
Building reference seed array...  [0.156s]
Building query seed array...  [0.139s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.235s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
Building reference seed array...  [0.164s]
Building query seed array...  [0.135s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.234s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
Building reference seed array...  [0.131s]
Building query seed array...  [0.124s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.234s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
Building reference seed array...  [0.13s]
Building query seed array...  [0.117s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.215s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
Building reference seed array...  [0.154s]
Building query seed array...  [0.129s]
Computing hash join...  [0.07s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.217s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
Building reference seed array...  [0.16s]
Building query seed array...  [0.13s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.219s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4.
Building reference seed array...  [0.128s]
Building query seed array...  [0.115s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.214s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
Building reference seed array...  [0.132s]
Building query seed array...  [0.118s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.226s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
Building reference seed array...  [0.155s]
Building query seed array...  [0.132s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.231s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
Building reference seed array...  [0.167s]
Building query seed array...  [0.134s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.226s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
Building reference seed array...  [0.13s]
Building query seed array...  [0.115s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.226s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
Building reference seed array...  [0.132s]
Building query seed array...  [0.12s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.213s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
Building reference seed array...  [0.157s]
Building query seed array...  [0.129s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.217s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
Building reference seed array...  [0.159s]
Building query seed array...  [0.136s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.218s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
Building reference seed array...  [0.129s]
Building query seed array...  [0.122s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.211s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
Building reference seed array...  [0.133s]
Building query seed array...  [0.118s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.211s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
Building reference seed array...  [0.152s]
Building query seed array...  [0.13s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.21s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
Building reference seed array...  [0.159s]
Building query seed array...  [0.131s]
Computing hash join...  [0.07s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.214s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
Building reference seed array...  [0.133s]
Building query seed array...  [0.121s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.218s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
Building reference seed array...  [0.132s]
Building query seed array...  [0.12s]
Computing hash join...  [0.07s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.218s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
Building reference seed array...  [0.156s]
Building query seed array...  [0.136s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.221s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
Building reference seed array...  [0.161s]
Building query seed array...  [0.13s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.223s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
Building reference seed array...  [0.127s]
Building query seed array...  [0.118s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.215s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
Building reference seed array...  [0.13s]
Building query seed array...  [0.119s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.223s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
Building reference seed array...  [0.158s]
Building query seed array...  [0.134s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.222s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
Building reference seed array...  [0.162s]
Building query seed array...  [0.136s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.22s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
Building reference seed array...  [0.13s]
Building query seed array...  [0.119s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.216s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
Building reference seed array...  [0.127s]
Building query seed array...  [0.117s]
Computing hash join...  [0.07s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.211s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
Building reference seed array...  [0.15s]
Building query seed array...  [0.139s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.213s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
Building reference seed array...  [0.163s]
Building query seed array...  [0.129s]
Computing hash join...  [0.069s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.216s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
Building reference seed array...  [0.129s]
Building query seed array...  [0.116s]
Computing hash join...  [0.07s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.211s]
Deallocating memory...  [0s]
Loading trace points...  [0.178s]
Sorting trace points...  [0.029s]
Computing alignments...  [7.611s]
Deallocating buffers...  [0.007s]
Loading trace points...  [0s]
Loading reference sequences...  [0s]
Deallocating buffers...  [0s]
Deallocating queries...  [0.027s]
Loading query sequences...  [0s]
Closing the input file...  [0s]
Closing the output file...  [0s]
Closing the database...  [0.003s]
Cleaning up...  [0s]
Total time = 52.53s
Reported 8966 pairwise alignments, 8966 HSPs.
8966 queries aligned.