[2025-04-10 18:05:49,581] multiqc [DEBUG ] This is MultiQC v1.12 [2025-04-10 18:05:49,582] multiqc [DEBUG ] No MultiQC config found: /modules/uri_apps/software/MultiQC/1.12-foss-2021b/lib/python3.9/site-packages/multiqc_config.yaml [2025-04-10 18:05:49,583] multiqc [DEBUG ] No MultiQC config found: /home/zdellaert_uri_edu/.multiqc_config.yaml [2025-04-10 18:05:49,584] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2025-04-10 18:05:49,584] multiqc [DEBUG ] Command used: /modules/uri_apps/software/MultiQC/1.12-foss-2021b/bin/multiqc trimmed_POR-71-TP2_S9_R1_001_fastqc.html trimmed_POR-71-TP2_S9_R1_001_fastqc.zip trimmed_POR-71-TP2_S9_R2_001_fastqc.html trimmed_POR-71-TP2_S9_R2_001_fastqc.zip trimmed_POR-73-TP2_S7_R1_001_fastqc.html trimmed_POR-73-TP2_S7_R1_001_fastqc.zip trimmed_POR-73-TP2_S7_R2_001_fastqc.html trimmed_POR-73-TP2_S7_R2_001_fastqc.zip trimmed_POR-76-TP2_S6_R1_001_fastqc.html trimmed_POR-76-TP2_S6_R1_001_fastqc.zip trimmed_POR-76-TP2_S6_R2_001_fastqc.html trimmed_POR-76-TP2_S6_R2_001_fastqc.zip trimmed_POR-79-TP2_S10_R1_001_fastqc.html trimmed_POR-79-TP2_S10_R1_001_fastqc.zip trimmed_POR-79-TP2_S10_R2_001_fastqc.html trimmed_POR-79-TP2_S10_R2_001_fastqc.zip trimmed_POR-82-TP2_S8_R1_001_fastqc.html trimmed_POR-82-TP2_S8_R1_001_fastqc.zip trimmed_POR-82-TP2_S8_R2_001_fastqc.html trimmed_POR-82-TP2_S8_R2_001_fastqc.zip [2025-04-10 18:05:50,089] multiqc [WARNING] MultiQC Version v1.28 now available! [2025-04-10 18:05:50,089] multiqc [DEBUG ] Command : /modules/uri_apps/software/MultiQC/1.12-foss-2021b/bin/multiqc trimmed_POR-71-TP2_S9_R1_001_fastqc.html trimmed_POR-71-TP2_S9_R1_001_fastqc.zip trimmed_POR-71-TP2_S9_R2_001_fastqc.html trimmed_POR-71-TP2_S9_R2_001_fastqc.zip trimmed_POR-73-TP2_S7_R1_001_fastqc.html trimmed_POR-73-TP2_S7_R1_001_fastqc.zip trimmed_POR-73-TP2_S7_R2_001_fastqc.html trimmed_POR-73-TP2_S7_R2_001_fastqc.zip trimmed_POR-76-TP2_S6_R1_001_fastqc.html trimmed_POR-76-TP2_S6_R1_001_fastqc.zip trimmed_POR-76-TP2_S6_R2_001_fastqc.html trimmed_POR-76-TP2_S6_R2_001_fastqc.zip trimmed_POR-79-TP2_S10_R1_001_fastqc.html trimmed_POR-79-TP2_S10_R1_001_fastqc.zip trimmed_POR-79-TP2_S10_R2_001_fastqc.html trimmed_POR-79-TP2_S10_R2_001_fastqc.zip trimmed_POR-82-TP2_S8_R1_001_fastqc.html trimmed_POR-82-TP2_S8_R1_001_fastqc.zip trimmed_POR-82-TP2_S8_R2_001_fastqc.html trimmed_POR-82-TP2_S8_R2_001_fastqc.zip [2025-04-10 18:05:50,089] multiqc [DEBUG ] Working dir : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc [2025-04-10 18:05:50,089] multiqc [DEBUG ] Template : default [2025-04-10 18:05:50,090] multiqc [DEBUG ] Running Python 3.9.6 (default, Nov 15 2024, 16:57:16) [GCC 11.2.0] [2025-04-10 18:05:50,091] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2025-04-10 18:05:50,091] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpej7pqzv8 [2025-04-10 18:05:50,432] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_POR-71-TP2_S9_R1_001_fastqc.html [2025-04-10 18:05:50,432] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_POR-71-TP2_S9_R1_001_fastqc.zip [2025-04-10 18:05:50,433] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_POR-71-TP2_S9_R2_001_fastqc.html [2025-04-10 18:05:50,433] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_POR-71-TP2_S9_R2_001_fastqc.zip [2025-04-10 18:05:50,433] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_POR-73-TP2_S7_R1_001_fastqc.html [2025-04-10 18:05:50,433] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_POR-73-TP2_S7_R1_001_fastqc.zip [2025-04-10 18:05:50,433] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_POR-73-TP2_S7_R2_001_fastqc.html [2025-04-10 18:05:50,433] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_POR-73-TP2_S7_R2_001_fastqc.zip [2025-04-10 18:05:50,433] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_POR-76-TP2_S6_R1_001_fastqc.html [2025-04-10 18:05:50,433] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_POR-76-TP2_S6_R1_001_fastqc.zip [2025-04-10 18:05:50,434] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_POR-76-TP2_S6_R2_001_fastqc.html [2025-04-10 18:05:50,434] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_POR-76-TP2_S6_R2_001_fastqc.zip [2025-04-10 18:05:50,434] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_POR-79-TP2_S10_R1_001_fastqc.html [2025-04-10 18:05:50,434] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_POR-79-TP2_S10_R1_001_fastqc.zip [2025-04-10 18:05:50,434] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_POR-79-TP2_S10_R2_001_fastqc.html [2025-04-10 18:05:50,434] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_POR-79-TP2_S10_R2_001_fastqc.zip [2025-04-10 18:05:50,434] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_POR-82-TP2_S8_R1_001_fastqc.html [2025-04-10 18:05:50,435] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_POR-82-TP2_S8_R1_001_fastqc.zip [2025-04-10 18:05:50,435] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_POR-82-TP2_S8_R2_001_fastqc.html [2025-04-10 18:05:50,435] multiqc [INFO ] Search path : /scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/trimmed_POR-82-TP2_S8_R2_001_fastqc.zip [2025-04-10 18:05:50,480] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_R1_001_fastqc.html [2025-04-10 18:05:50,482] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_R1_001_fastqc.html [2025-04-10 18:05:50,482] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_R1_001_fastqc.html [2025-04-10 18:05:50,484] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_R1_001_fastqc.html [2025-04-10 18:05:50,485] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_R1_001_fastqc.html [2025-04-10 18:05:50,485] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_R1_001_fastqc.html [2025-04-10 18:05:50,485] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_R1_001_fastqc.html [2025-04-10 18:05:50,485] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_R1_001_fastqc.html [2025-04-10 18:05:50,485] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_R1_001_fastqc.html [2025-04-10 18:05:50,485] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_R1_001_fastqc.html [2025-04-10 18:05:50,513] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_R1_001_fastqc.html [2025-04-10 18:05:50,519] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_R2_001_fastqc.html [2025-04-10 18:05:50,520] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_R2_001_fastqc.html [2025-04-10 18:05:50,520] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_R2_001_fastqc.html [2025-04-10 18:05:50,522] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_R2_001_fastqc.html [2025-04-10 18:05:50,522] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_R2_001_fastqc.html [2025-04-10 18:05:50,522] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_R2_001_fastqc.html [2025-04-10 18:05:50,522] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_R2_001_fastqc.html [2025-04-10 18:05:50,522] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_R2_001_fastqc.html [2025-04-10 18:05:50,522] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_R2_001_fastqc.html [2025-04-10 18:05:50,522] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_R2_001_fastqc.html [2025-04-10 18:05:50,548] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POR-71-TP2_S9_R2_001_fastqc.html [2025-04-10 18:05:50,553] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_R1_001_fastqc.html [2025-04-10 18:05:50,554] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_R1_001_fastqc.html [2025-04-10 18:05:50,554] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_R1_001_fastqc.html [2025-04-10 18:05:50,556] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_R1_001_fastqc.html [2025-04-10 18:05:50,556] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_R1_001_fastqc.html [2025-04-10 18:05:50,556] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_R1_001_fastqc.html [2025-04-10 18:05:50,556] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_R1_001_fastqc.html [2025-04-10 18:05:50,556] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_R1_001_fastqc.html [2025-04-10 18:05:50,556] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_R1_001_fastqc.html [2025-04-10 18:05:50,556] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_R1_001_fastqc.html [2025-04-10 18:05:50,582] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_R1_001_fastqc.html [2025-04-10 18:05:50,587] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_R2_001_fastqc.html [2025-04-10 18:05:50,588] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_R2_001_fastqc.html [2025-04-10 18:05:50,588] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_R2_001_fastqc.html [2025-04-10 18:05:50,590] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_R2_001_fastqc.html [2025-04-10 18:05:50,590] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_R2_001_fastqc.html [2025-04-10 18:05:50,590] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_R2_001_fastqc.html [2025-04-10 18:05:50,590] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_R2_001_fastqc.html [2025-04-10 18:05:50,590] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_R2_001_fastqc.html [2025-04-10 18:05:50,590] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_R2_001_fastqc.html [2025-04-10 18:05:50,590] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_R2_001_fastqc.html [2025-04-10 18:05:50,616] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POR-73-TP2_S7_R2_001_fastqc.html [2025-04-10 18:05:50,621] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_R1_001_fastqc.html [2025-04-10 18:05:50,622] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_R1_001_fastqc.html [2025-04-10 18:05:50,622] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_R1_001_fastqc.html [2025-04-10 18:05:50,624] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_R1_001_fastqc.html [2025-04-10 18:05:50,624] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_R1_001_fastqc.html [2025-04-10 18:05:50,624] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_R1_001_fastqc.html [2025-04-10 18:05:50,624] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_R1_001_fastqc.html [2025-04-10 18:05:50,624] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_R1_001_fastqc.html [2025-04-10 18:05:50,624] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_R1_001_fastqc.html [2025-04-10 18:05:50,624] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_R1_001_fastqc.html [2025-04-10 18:05:50,651] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_R1_001_fastqc.html [2025-04-10 18:05:50,656] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_R2_001_fastqc.html [2025-04-10 18:05:50,657] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_R2_001_fastqc.html [2025-04-10 18:05:50,657] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_R2_001_fastqc.html [2025-04-10 18:05:50,658] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_R2_001_fastqc.html [2025-04-10 18:05:50,658] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_R2_001_fastqc.html [2025-04-10 18:05:50,658] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_R2_001_fastqc.html [2025-04-10 18:05:50,659] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_R2_001_fastqc.html [2025-04-10 18:05:50,659] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_R2_001_fastqc.html [2025-04-10 18:05:50,659] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_R2_001_fastqc.html [2025-04-10 18:05:50,659] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_R2_001_fastqc.html [2025-04-10 18:05:50,686] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POR-76-TP2_S6_R2_001_fastqc.html [2025-04-10 18:05:50,691] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_R1_001_fastqc.html [2025-04-10 18:05:50,692] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_R1_001_fastqc.html [2025-04-10 18:05:50,692] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_R1_001_fastqc.html [2025-04-10 18:05:50,693] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_R1_001_fastqc.html [2025-04-10 18:05:50,693] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_R1_001_fastqc.html [2025-04-10 18:05:50,693] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_R1_001_fastqc.html [2025-04-10 18:05:50,693] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_R1_001_fastqc.html [2025-04-10 18:05:50,693] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_R1_001_fastqc.html [2025-04-10 18:05:50,693] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_R1_001_fastqc.html [2025-04-10 18:05:50,694] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_R1_001_fastqc.html [2025-04-10 18:05:50,720] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_R1_001_fastqc.html [2025-04-10 18:05:50,726] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_R2_001_fastqc.html [2025-04-10 18:05:50,727] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_R2_001_fastqc.html [2025-04-10 18:05:50,727] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_R2_001_fastqc.html [2025-04-10 18:05:50,728] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_R2_001_fastqc.html [2025-04-10 18:05:50,728] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_R2_001_fastqc.html [2025-04-10 18:05:50,729] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_R2_001_fastqc.html [2025-04-10 18:05:50,729] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_R2_001_fastqc.html [2025-04-10 18:05:50,729] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_R2_001_fastqc.html [2025-04-10 18:05:50,729] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_R2_001_fastqc.html [2025-04-10 18:05:50,729] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_R2_001_fastqc.html [2025-04-10 18:05:50,755] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POR-79-TP2_S10_R2_001_fastqc.html [2025-04-10 18:05:50,760] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_R1_001_fastqc.html [2025-04-10 18:05:50,761] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_R1_001_fastqc.html [2025-04-10 18:05:50,761] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_R1_001_fastqc.html [2025-04-10 18:05:50,763] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_R1_001_fastqc.html [2025-04-10 18:05:50,763] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_R1_001_fastqc.html [2025-04-10 18:05:50,763] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_R1_001_fastqc.html [2025-04-10 18:05:50,763] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_R1_001_fastqc.html [2025-04-10 18:05:50,763] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_R1_001_fastqc.html [2025-04-10 18:05:50,763] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_R1_001_fastqc.html [2025-04-10 18:05:50,763] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_R1_001_fastqc.html [2025-04-10 18:05:50,790] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_R1_001_fastqc.html [2025-04-10 18:05:50,795] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_R2_001_fastqc.html [2025-04-10 18:05:50,796] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_R2_001_fastqc.html [2025-04-10 18:05:50,796] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_R2_001_fastqc.html [2025-04-10 18:05:50,798] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_R2_001_fastqc.html [2025-04-10 18:05:50,798] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_R2_001_fastqc.html [2025-04-10 18:05:50,798] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_R2_001_fastqc.html [2025-04-10 18:05:50,798] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_R2_001_fastqc.html [2025-04-10 18:05:50,798] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_R2_001_fastqc.html [2025-04-10 18:05:50,798] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_R2_001_fastqc.html [2025-04-10 18:05:50,798] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_R2_001_fastqc.html [2025-04-10 18:05:50,825] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: trimmed_POR-82-TP2_S8_R2_001_fastqc.html [2025-04-10 18:05:52,616] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2025-04-10 18:05:52,624] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2025-04-10 18:05:53,724] multiqc.modules.fastqc.fastqc [INFO ] Found 10 reports [2025-04-10 18:05:53,856] multiqc [INFO ] Compressing plot data [2025-04-10 18:05:54,031] multiqc [INFO ] Report : multiqc_report.html [2025-04-10 18:05:54,031] multiqc [INFO ] Data : multiqc_data [2025-04-10 18:05:54,031] multiqc [DEBUG ] Moving data file from '/tmp/tmpej7pqzv8/multiqc_data' to '/scratch3/workspace/zdellaert_uri_edu-deep_dive/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-cutadapt-FastQC-MultiQC/trimmed_qc/multiqc_data' [2025-04-10 18:05:54,337] multiqc [INFO ] MultiQC complete