diamond v2.1.8.162 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen
Documentation, support and updates available at http://www.diamondsearch.org
Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)

#CPU threads: 40
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: ../output/30.00-Apul-transcriptome-GOslims
#Target sequences to report alignments for: 1
Opening the database...  [0.08s]
Database: ../../M-multi-species/data/blastdbs/20250618-diamond.dmnd (type: Diamond database, sequences: 573661, letters: 207922125)
Block size = 15000000000
Opening the input file...  [0.036s]
Opening the output file...  [0s]
Loading query sequences...  [2.042s]
Masking queries...  [0.854s]
Algorithm: Double-indexed
Building query histograms...  [1.264s]
Seeking in database...  [0s]
Loading reference sequences...  [0.58s]
Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4.
Building reference seed array...  [0.233s]
Building query seed array...  [0.149s]
Computing hash join...  [0.075s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.256s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4.
Building reference seed array...  [0.156s]
Building query seed array...  [0.121s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.252s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4.
Building reference seed array...  [0.164s]
Building query seed array...  [0.126s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.251s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4.
Building reference seed array...  [0.133s]
Building query seed array...  [0.111s]
Computing hash join...  [0.075s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.245s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4.
Building reference seed array...  [0.133s]
Building query seed array...  [0.107s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.226s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4.
Building reference seed array...  [0.154s]
Building query seed array...  [0.122s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.219s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4.
Building reference seed array...  [0.159s]
Building query seed array...  [0.126s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.228s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4.
Building reference seed array...  [0.133s]
Building query seed array...  [0.107s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.222s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4.
Building reference seed array...  [0.133s]
Building query seed array...  [0.11s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.24s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4.
Building reference seed array...  [0.158s]
Building query seed array...  [0.125s]
Computing hash join...  [0.075s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.241s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4.
Building reference seed array...  [0.163s]
Building query seed array...  [0.124s]
Computing hash join...  [0.075s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.239s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4.
Building reference seed array...  [0.134s]
Building query seed array...  [0.107s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.239s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4.
Building reference seed array...  [0.133s]
Building query seed array...  [0.107s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.232s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4.
Building reference seed array...  [0.157s]
Building query seed array...  [0.12s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.241s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4.
Building reference seed array...  [0.161s]
Building query seed array...  [0.125s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.232s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4.
Building reference seed array...  [0.128s]
Building query seed array...  [0.11s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.237s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4.
Building reference seed array...  [0.13s]
Building query seed array...  [0.108s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.227s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4.
Building reference seed array...  [0.156s]
Building query seed array...  [0.123s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.016s]
Searching alignments...  [0.23s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4.
Building reference seed array...  [0.166s]
Building query seed array...  [0.125s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.23s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4.
Building reference seed array...  [0.133s]
Building query seed array...  [0.11s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.231s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4.
Building reference seed array...  [0.134s]
Building query seed array...  [0.108s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.232s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4.
Building reference seed array...  [0.162s]
Building query seed array...  [0.125s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.231s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4.
Building reference seed array...  [0.165s]
Building query seed array...  [0.135s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.021s]
Searching alignments...  [0.24s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4.
Building reference seed array...  [0.134s]
Building query seed array...  [0.109s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.237s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4.
Building reference seed array...  [0.131s]
Building query seed array...  [0.112s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.224s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4.
Building reference seed array...  [0.159s]
Building query seed array...  [0.118s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.224s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4.
Building reference seed array...  [0.164s]
Building query seed array...  [0.125s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.224s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4.
Building reference seed array...  [0.13s]
Building query seed array...  [0.106s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.215s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4.
Building reference seed array...  [0.124s]
Building query seed array...  [0.109s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.02s]
Searching alignments...  [0.221s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4.
Building reference seed array...  [0.154s]
Building query seed array...  [0.122s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.228s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4.
Building reference seed array...  [0.158s]
Building query seed array...  [0.125s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.236s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4.
Building reference seed array...  [0.132s]
Building query seed array...  [0.11s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.243s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4.
Building reference seed array...  [0.135s]
Building query seed array...  [0.114s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.256s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4.
Building reference seed array...  [0.162s]
Building query seed array...  [0.125s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.25s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4.
Building reference seed array...  [0.166s]
Building query seed array...  [0.126s]
Computing hash join...  [0.075s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.251s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4.
Building reference seed array...  [0.137s]
Building query seed array...  [0.109s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.243s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4.
Building reference seed array...  [0.127s]
Building query seed array...  [0.111s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.232s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4.
Building reference seed array...  [0.158s]
Building query seed array...  [0.121s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.226s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4.
Building reference seed array...  [0.162s]
Building query seed array...  [0.122s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.236s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4.
Building reference seed array...  [0.13s]
Building query seed array...  [0.106s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.226s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4.
Building reference seed array...  [0.132s]
Building query seed array...  [0.109s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.246s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4.
Building reference seed array...  [0.16s]
Building query seed array...  [0.122s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.236s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4.
Building reference seed array...  [0.163s]
Building query seed array...  [0.126s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.247s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4.
Building reference seed array...  [0.134s]
Building query seed array...  [0.11s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.244s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4.
Building reference seed array...  [0.13s]
Building query seed array...  [0.108s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.224s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4.
Building reference seed array...  [0.159s]
Building query seed array...  [0.122s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.233s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4.
Building reference seed array...  [0.16s]
Building query seed array...  [0.125s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.23s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4.
Building reference seed array...  [0.132s]
Building query seed array...  [0.107s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.229s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4.
Building reference seed array...  [0.136s]
Building query seed array...  [0.11s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.231s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4.
Building reference seed array...  [0.158s]
Building query seed array...  [0.121s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.016s]
Searching alignments...  [0.228s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4.
Building reference seed array...  [0.163s]
Building query seed array...  [0.122s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.016s]
Searching alignments...  [0.224s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4.
Building reference seed array...  [0.131s]
Building query seed array...  [0.11s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.223s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4.
Building reference seed array...  [0.132s]
Building query seed array...  [0.114s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.229s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4.
Building reference seed array...  [0.159s]
Building query seed array...  [0.126s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.016s]
Searching alignments...  [0.24s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4.
Building reference seed array...  [0.163s]
Building query seed array...  [0.125s]
Computing hash join...  [0.073s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.236s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4.
Building reference seed array...  [0.129s]
Building query seed array...  [0.109s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.016s]
Searching alignments...  [0.232s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4.
Building reference seed array...  [0.134s]
Building query seed array...  [0.11s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.234s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4.
Building reference seed array...  [0.16s]
Building query seed array...  [0.122s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.231s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4.
Building reference seed array...  [0.161s]
Building query seed array...  [0.124s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.016s]
Searching alignments...  [0.23s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4.
Building reference seed array...  [0.131s]
Building query seed array...  [0.11s]
Computing hash join...  [0.071s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.239s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4.
Building reference seed array...  [0.13s]
Building query seed array...  [0.111s]
Computing hash join...  [0.074s]
Masking low complexity seeds...  [0.017s]
Searching alignments...  [0.228s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4.
Building reference seed array...  [0.155s]
Building query seed array...  [0.124s]
Computing hash join...  [0.075s]
Masking low complexity seeds...  [0.016s]
Searching alignments...  [0.226s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4.
Building reference seed array...  [0.163s]
Building query seed array...  [0.125s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.018s]
Searching alignments...  [0.224s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4.
Building reference seed array...  [0.132s]
Building query seed array...  [0.11s]
Computing hash join...  [0.072s]
Masking low complexity seeds...  [0.019s]
Searching alignments...  [0.225s]
Deallocating memory...  [0s]
Loading trace points...  [0.178s]
Sorting trace points...  [0.032s]
Computing alignments...  [7.923s]
Deallocating buffers...  [0.012s]
Loading trace points...  [0s]
Loading reference sequences...  [0s]
Deallocating buffers...  [0s]
Deallocating queries...  [0.019s]
Loading query sequences...  [0s]
Closing the input file...  [0s]
Closing the output file...  [0s]
Closing the database...  [0.002s]
Cleaning up...  [0s]
Total time = 53.293s
Reported 9141 pairwise alignments, 9141 HSPs.
9141 queries aligned.