CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 524898 1573270 25.02 2098168 2 564719 2773157 16.92 3337876 3 480482 3133131 13.30 3613613 4 414118 2287830 15.33 2701948 5 238671 3163314 7.02 3401985 6 199713 2059011 8.84 2258724 7 188824 1919086 8.96 2107910 8 201384 2056707 8.92 2258091 9 204246 2000371 9.26 2204617 10 211039 2004933 9.52 2215972 11 220237 2088569 9.54 2308806 12 225625 2069039 9.83 2294664 13 221215 2057642 9.71 2278857 14 223806 2155509 9.41 2379315 15 226548 2158740 9.50 2385288 16 227010 2113450 9.70 2340460 17 224381 2095636 9.67 2320017 18 224186 2223560 9.16 2447746 19 222486 2189428 9.22 2411914 20 225638 2192665 9.33 2418303 21 224990 2215448 9.22 2440438 22 224011 2191282 9.27 2415293 23 228652 2244715 9.24 2473367 24 225270 2258346 9.07 2483616 25 227673 2271270 9.11 2498943 26 227625 2340312 8.86 2567937 27 224904 2291735 8.94 2516639 28 228998 2286753 9.10 2515751 29 229898 2326522 8.99 2556420 30 227387 2332566 8.88 2559953 31 226567 2318079 8.90 2544646 32 229367 2351716 8.89 2581083 33 228874 2398298 8.71 2627172 34 227613 2398553 8.67 2626166 35 226664 2339048 8.83 2565712 36 227211 2356609 8.79 2583820 37 226981 2344457 8.83 2571438 38 225533 2358939 8.73 2584472 39 229260 2364887 8.84 2594147 40 226630 2338290 8.84 2564920 41 225083 2330635 8.81 2555718 42 224057 2342201 8.73 2566258 43 224574 2341347 8.75 2565921 44 223656 2346656 8.70 2570312 45 222547 2341836 8.68 2564383 46 223599 2340841 8.72 2564440 47 223953 2367337 8.64 2591290 48 222345 2388496 8.52 2610841 49 221493 2335198 8.66 2556691 50 221740 2350752 8.62 2572492 51 222318 2339066 8.68 2561384 52 221746 2328393 8.70 2550139 53 221204 2321325 8.70 2542529 54 220545 2321207 8.68 2541752 55 217718 2314637 8.60 2532355 56 221072 2314069 8.72 2535141 57 220079 2348405 8.57 2568484 58 217484 2316120 8.58 2533604 59 218950 2303068 8.68 2522018 60 216697 2298235 8.62 2514932 61 217763 2285711 8.70 2503474 62 217166 2263421 8.75 2480587 63 214053 2270941 8.61 2484994 64 212965 2249237 8.65 2462202 65 212782 2216577 8.76 2429359 66 210730 2203956 8.73 2414686 67 210176 2185023 8.77 2395199 68 208764 2192403 8.69 2401167 69 208883 2192264 8.70 2401147 70 207052 2188439 8.64 2395491 71 205632 2168822 8.66 2374454 72 205619 2179867 8.62 2385486 73 203156 2124748 8.73 2327904 74 203637 2106192 8.82 2309829 75 200994 2111364 8.69 2312358 76 201453 2086397 8.81 2287850 77 200193 2074005 8.80 2274198 78 196703 2050286 8.75 2246989 79 194575 2036729 8.72 2231304 80 193202 2002107 8.80 2195309 81 192480 1988205 8.83 2180685 82 190886 1969707 8.83 2160593 83 189115 1947257 8.85 2136372 84 188223 1943715 8.83 2131938 85 185128 1904764 8.86 2089892 86 183049 1885803 8.85 2068852 87 182026 1850843 8.95 2032869 88 180982 1832797 8.99 2013779 89 180829 1820758 9.03 2001587 90 177236 1807853 8.93 1985089 91 176304 1794644 8.95 1970948 92 173670 1755695 9.00 1929365 93 173069 1751923 8.99 1924992 94 170919 1726803 9.01 1897722 95 169624 1707113 9.04 1876737 96 167649 1691312 9.02 1858961 97 165036 1671724 8.99 1836760 98 163289 1635745 9.08 1799034 99 161268 1633238 8.99 1794506 100 159877 1602602 9.07 1762479 101 157633 1574715 9.10 1732348 102 155916 1563341 9.07 1719257 103 154396 1542809 9.10 1697205 104 151932 1526663 9.05 1678595 105 150359 1490357 9.16 1640716 106 146971 1468115 9.10 1615086 107 146255 1437543 9.23 1583798 108 145026 1429933 9.21 1574959 109 143175 1432309 9.09 1575484 110 141690 1402304 9.18 1543994 111 140303 1380777 9.22 1521080 112 139072 1352340 9.32 1491412 113 136627 1353090 9.17 1489717 114 134258 1362092 8.97 1496350 115 132945 1288452 9.35 1421397 116 132196 1276321 9.39 1408517 117 129287 1247573 9.39 1376860 118 127175 1231711 9.36 1358886 119 126800 1218223 9.43 1345023 120 125167 1230178 9.24 1355345 121 122589 1183272 9.39 1305861 122 120366 1173892 9.30 1294258 123 120590 1204015 9.10 1324605 124 118293 1109805 9.63 1228098 125 115650 1095674 9.55 1211324 126 113979 1082166 9.53 1196145 127 111901 1060664 9.54 1172565 128 111653 1056132 9.56 1167785 129 109283 1047167 9.45 1156450 130 106952 1007842 9.59 1114794 131 105796 995118 9.61 1100914 132 104038 977373 9.62 1081411 133 102846 961012 9.67 1063858 134 101456 947008 9.68 1048464 135 98570 926872 9.61 1025442 136 97334 912698 9.64 1010032 137 97083 907600 9.66 1004683 138 95722 893254 9.68 988976 139 93347 876101 9.63 969448 140 91886 856960 9.68 948846 141 90225 851123 9.58 941348 142 88853 831500 9.65 920353 143 86154 801078 9.71 887232 144 86312 789820 9.85 876132 145 84235 775548 9.80 859783 146 83653 770900 9.79 854553 147 82063 764881 9.69 846944 148 82545 755761 9.85 838306 149 83994 741563 10.17 825557 150 78530 731911 9.69 810441 151 69851 680237 9.31 750088 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 607055 4958374 10.91 5565429 2 369153 1667815 18.12 2036968 3 233238 2592221 8.25 2825459 4 209561 2164291 8.83 2373852 5 75083 2952763 2.48 3027846 6 71353 3760451 1.86 3831804 7 66204 2397234 2.69 2463438 8 67620 2401481 2.74 2469101 9 60252 2356984 2.49 2417236 10 67237 2389313 2.74 2456550 11 62898 2396838 2.56 2459736 12 54323 2508907 2.12 2563230 13 51112 2480484 2.02 2531596 14 58899 2498321 2.30 2557220 15 49185 2553794 1.89 2602979 16 53580 2538081 2.07 2591661 17 44558 2569143 1.70 2613701 18 39558 2561354 1.52 2600912 19 38132 2588585 1.45 2626717 20 38989 2561240 1.50 2600229 21 36568 2567166 1.40 2603734 22 37029 2612690 1.40 2649719 23 34426 2612951 1.30 2647377 24 34002 2728553 1.23 2762555 25 33869 2637921 1.27 2671790 26 31977 2623261 1.20 2655238 27 31031 2644336 1.16 2675367 28 30564 2637979 1.15 2668543 29 29182 2640529 1.09 2669711 30 28625 2650379 1.07 2679004 31 27834 2661536 1.03 2689370 32 28910 2645397 1.08 2674307 33 27667 2685002 1.02 2712669 34 26465 2670171 0.98 2696636 35 25240 2670390 0.94 2695630 36 24513 2704950 0.90 2729463 37 24960 2716090 0.91 2741050 38 23747 2690700 0.87 2714447 39 23667 2721229 0.86 2744896 40 22713 2711471 0.83 2734184 41 22444 2705555 0.82 2727999 42 21480 2712570 0.79 2734050 43 21561 2702113 0.79 2723674 44 20894 2704605 0.77 2725499 45 20716 2726437 0.75 2747153 46 20330 2727774 0.74 2748104 47 20169 2706822 0.74 2726991 48 19635 2722830 0.72 2742465 49 19557 2715976 0.71 2735533 50 19292 2736712 0.70 2756004 51 19453 2718865 0.71 2738318 52 19322 2719454 0.71 2738776 53 18949 2688830 0.70 2707779 54 18731 2691751 0.69 2710482 55 18774 2699655 0.69 2718429 56 18419 2679782 0.68 2698201 57 18584 2706747 0.68 2725331 58 18182 2674795 0.68 2692977 59 18728 2653648 0.70 2672376 60 18775 2678414 0.70 2697189 61 18857 2655659 0.71 2674516 62 19223 2623984 0.73 2643207 63 19427 2605445 0.74 2624872 64 19344 2603129 0.74 2622473 65 19279 2597134 0.74 2616413 66 19616 2592067 0.75 2611683 67 19903 2555529 0.77 2575432 68 20213 2550168 0.79 2570381 69 20102 2555305 0.78 2575407 70 20135 2534803 0.79 2554938 71 20468 2505865 0.81 2526333 72 20539 2483036 0.82 2503575 73 21119 2460186 0.85 2481305 74 20819 2434221 0.85 2455040 75 21356 2439350 0.87 2460706 76 21225 2445455 0.86 2466680 77 21517 2394486 0.89 2416003 78 21817 2371184 0.91 2393001 79 21787 2334366 0.92 2356153 80 22150 2325398 0.94 2347548 81 22291 2287874 0.96 2310165 82 22353 2271302 0.97 2293655 83 22707 2252168 1.00 2274875 84 22648 2239656 1.00 2262304 85 23256 2214004 1.04 2237260 86 22951 2189881 1.04 2212832 87 23467 2192736 1.06 2216203 88 23560 2133794 1.09 2157354 89 23350 2112540 1.09 2135890 90 23775 2097215 1.12 2120990 91 24218 2076869 1.15 2101087 92 24157 2048845 1.17 2073002 93 24183 2048606 1.17 2072789 94 24083 1988727 1.20 2012810 95 24234 1954882 1.22 1979116 96 24223 1933054 1.24 1957277 97 24014 1909030 1.24 1933044 98 24064 1884109 1.26 1908173 99 23917 1863209 1.27 1887126 100 24328 1836133 1.31 1860461 101 24157 1818176 1.31 1842333 102 24318 1807489 1.33 1831807 103 24349 1768563 1.36 1792912 104 24498 1750724 1.38 1775222 105 24388 1726797 1.39 1751185 106 24277 1695038 1.41 1719315 107 24182 1676803 1.42 1700985 108 24393 1645258 1.46 1669651 109 24562 1629035 1.49 1653597 110 24080 1606746 1.48 1630826 111 24247 1574248 1.52 1598495 112 24341 1558445 1.54 1582786 113 23980 1527490 1.55 1551470 114 24207 1512302 1.58 1536509 115 24461 1496254 1.61 1520715 116 24004 1466270 1.61 1490274 117 24015 1442441 1.64 1466456 118 23704 1420619 1.64 1444323 119 24278 1409958 1.69 1434236 120 23928 1387703 1.70 1411631 121 23776 1365010 1.71 1388786 122 23358 1334973 1.72 1358331 123 23242 1319924 1.73 1343166 124 23470 1298041 1.78 1321511 125 23060 1273442 1.78 1296502 126 23431 1256582 1.83 1280013 127 23067 1228488 1.84 1251555 128 22953 1208853 1.86 1231806 129 22530 1186978 1.86 1209508 130 22496 1167672 1.89 1190168 131 22498 1144034 1.93 1166532 132 22442 1127549 1.95 1149991 133 22331 1109265 1.97 1131596 134 22077 1089788 1.99 1111865 135 22063 1073889 2.01 1095952 136 21778 1060771 2.01 1082549 137 21549 1028700 2.05 1050249 138 21549 1016075 2.08 1037624 139 22082 1001911 2.16 1023993 140 21075 980137 2.10 1001212 141 21034 966708 2.13 987742 142 22397 963322 2.27 985719 143 20439 923704 2.16 944143 144 20461 910256 2.20 930717 145 20316 894191 2.22 914507 146 20473 888049 2.25 908522 147 20752 875951 2.31 896703 148 21151 867556 2.38 888707 149 21666 850157 2.49 871823 150 24763 854159 2.82 878922 151 32259 780928 3.97 813187 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2035930 5606876 26.64 7642806 2 1874371 7105006 20.87 8979377 3 1338656 6932243 16.19 8270899 4 1282851 6510434 16.46 7793285 5 495121 7842883 5.94 8338004 6 447857 8665366 4.91 9113223 7 423554 9798691 4.14 10222245 8 389882 9577977 3.91 9967859 9 374239 9326471 3.86 9700710 10 345888 9278173 3.59 9624061 11 338116 9211951 3.54 9550067 12 303927 9233055 3.19 9536982 13 302801 9138433 3.21 9441234 14 282068 9058572 3.02 9340640 15 273718 9057944 2.93 9331662 16 282385 9043317 3.03 9325702 17 251489 8906791 2.75 9158280 18 230415 8953824 2.51 9184239 19 222214 8894650 2.44 9116864 20 230046 8891819 2.52 9121865 21 213345 9025819 2.31 9239164 22 215907 8952595 2.35 9168502 23 200228 8924921 2.19 9125149 24 191284 8928647 2.10 9119931 25 193796 8923608 2.13 9117404 26 183574 8923497 2.02 9107071 27 177309 8909143 1.95 9086452 28 176053 8989649 1.92 9165702 29 169459 9101034 1.83 9270493 30 165044 9073061 1.79 9238105 31 160264 9133772 1.72 9294036 32 163333 9137145 1.76 9300478 33 158313 9130873 1.70 9289186 34 151351 9165584 1.62 9316935 35 147043 9203871 1.57 9350914 36 140935 9356642 1.48 9497577 37 143153 9311352 1.51 9454505 38 136521 9313447 1.44 9449968 39 135761 9344544 1.43 9480305 40 128765 9388233 1.35 9516998 41 126369 9437045 1.32 9563414 42 121326 9510882 1.26 9632208 43 119532 9538691 1.24 9658223 44 116475 9564897 1.20 9681372 45 113137 9455132 1.18 9568269 46 111349 9513355 1.16 9624704 47 108476 9515199 1.13 9623675 48 104058 9523487 1.08 9627545 49 104469 9608023 1.08 9712492 50 100881 9512324 1.05 9613205 51 101805 9530428 1.06 9632233 52 98805 9487921 1.03 9586726 53 99575 9524824 1.03 9624399 54 92946 9475140 0.97 9568086 55 92718 9443897 0.97 9536615 56 91232 9455618 0.96 9546850 57 90047 9422502 0.95 9512549 58 90452 9411368 0.95 9501820 59 90988 9395004 0.96 9485992 60 89586 9402104 0.94 9491690 61 89973 9390571 0.95 9480544 62 89970 9375242 0.95 9465212 63 90092 9204842 0.97 9294934 64 88620 9182302 0.96 9270922 65 89318 9135075 0.97 9224393 66 88783 9128345 0.96 9217128 67 90728 9114422 0.99 9205150 68 91456 9014249 1.00 9105705 69 91685 9012637 1.01 9104322 70 91410 8886669 1.02 8978079 71 92583 8885776 1.03 8978359 72 93601 8820263 1.05 8913864 73 95545 8657070 1.09 8752615 74 94629 8578134 1.09 8672763 75 94949 8522520 1.10 8617469 76 95540 8445045 1.12 8540585 77 96526 8364478 1.14 8461004 78 97001 8299829 1.16 8396830 79 98801 8284735 1.18 8383536 80 98663 8142060 1.20 8240723 81 100409 8093230 1.23 8193639 82 101365 8039067 1.25 8140432 83 103106 7977022 1.28 8080128 84 101923 7888384 1.28 7990307 85 103263 7776667 1.31 7879930 86 103627 7707031 1.33 7810658 87 104463 7589366 1.36 7693829 88 105633 7508006 1.39 7613639 89 106825 7439808 1.42 7546633 90 108255 7408342 1.44 7516597 91 109823 7304098 1.48 7413921 92 109948 7218745 1.50 7328693 93 110121 7154273 1.52 7264394 94 109879 7050278 1.53 7160157 95 109843 6953076 1.56 7062919 96 109412 6858499 1.57 6967911 97 109009 6740642 1.59 6849651 98 109947 6656407 1.62 6766354 99 109776 6616109 1.63 6725885 100 110203 6507403 1.67 6617606 101 110885 6428275 1.70 6539160 102 110612 6335793 1.72 6446405 103 110249 6221489 1.74 6331738 104 110840 6161563 1.77 6272403 105 111317 6090256 1.79 6201573 106 110793 6035239 1.80 6146032 107 110997 5958339 1.83 6069336 108 110363 5871577 1.84 5981940 109 109847 5744520 1.88 5854367 110 110538 5657870 1.92 5768408 111 111352 5665369 1.93 5776721 112 110559 5509160 1.97 5619719 113 110484 5408312 2.00 5518796 114 109900 5312504 2.03 5422404 115 109775 5247848 2.05 5357623 116 108743 5150924 2.07 5259667 117 109051 5070231 2.11 5179282 118 108533 4990866 2.13 5099399 119 109357 4931296 2.17 5040653 120 107666 4843345 2.17 4951011 121 106219 4760306 2.18 4866525 122 106816 4687168 2.23 4793984 123 105612 4612939 2.24 4718551 124 105389 4537843 2.27 4643232 125 105963 4519261 2.29 4625224 126 104069 4372702 2.32 4476771 127 103836 4319462 2.35 4423298 128 103195 4261021 2.36 4364216 129 102610 4193533 2.39 4296143 130 102075 4160768 2.39 4262843 131 101885 4064665 2.45 4166550 132 100955 3984415 2.47 4085370 133 100973 3917643 2.51 4018616 134 100478 3842877 2.55 3943355 135 99196 3777945 2.56 3877141 136 98812 3723874 2.58 3822686 137 98717 3677050 2.61 3775767 138 97249 3608486 2.62 3705735 139 97393 3577237 2.65 3674630 140 97892 3508879 2.71 3606771 141 95205 3415230 2.71 3510435 142 96400 3385709 2.77 3482109 143 94089 3309619 2.76 3403708 144 93999 3234770 2.82 3328769 145 93889 3182722 2.87 3276611 146 93880 3138185 2.90 3232065 147 95367 3121689 2.96 3217056 148 95911 3042994 3.06 3138905 149 97935 3001857 3.16 3099792 150 101873 2991563 3.29 3093436 151 124033 2744096 4.32 2868129 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 138959 464553 23.03 603512 2 147196 895398 14.12 1042594 3 133925 931901 12.57 1065826 4 113900 675151 14.44 789051 5 67766 1044228 6.09 1111994 6 51813 558349 8.49 610162 7 50306 520668 8.81 570974 8 54534 523028 9.44 577562 9 54361 504274 9.73 558635 10 55779 491608 10.19 547387 11 58603 527228 10.00 585831 12 59172 496095 10.66 555267 13 56639 476695 10.62 533334 14 55983 498920 10.09 554903 15 55471 478581 10.39 534052 16 54927 465787 10.55 520714 17 53016 454354 10.45 507370 18 52507 456287 10.32 508794 19 51786 455873 10.20 507659 20 51118 445932 10.28 497050 21 49438 441420 10.07 490858 22 48694 418328 10.43 467022 23 48223 426115 10.17 474338 24 47150 418922 10.12 466072 25 46063 414848 9.99 460911 26 45452 423308 9.70 468760 27 44739 398987 10.08 443726 28 43950 391277 10.10 435227 29 43557 393817 9.96 437374 30 41669 387735 9.70 429404 31 41210 375046 9.90 416256 32 40741 374066 9.82 414807 33 40948 387209 9.56 428157 34 39639 401879 8.98 441518 35 38453 355097 9.77 393550 36 37455 348230 9.71 385685 37 37140 340089 9.85 377229 38 35631 334983 9.61 370614 39 35621 333107 9.66 368728 40 33851 320934 9.54 354785 41 33476 314539 9.62 348015 42 32678 311603 9.49 344281 43 32408 311953 9.41 344361 44 31877 303228 9.51 335105 45 30577 294114 9.42 324691 46 30155 289879 9.42 320034 47 29965 293768 9.26 323733 48 29017 293293 9.00 322310 49 28350 275901 9.32 304251 50 28021 272546 9.32 300567 51 27621 267053 9.37 294674 52 27332 262375 9.43 289707 53 26498 257973 9.31 284471 54 26225 254700 9.34 280925 55 25346 247643 9.28 272989 56 25402 245072 9.39 270474 57 24956 244717 9.25 269673 58 24111 240796 9.10 264907 59 24178 235071 9.33 259249 60 23479 232212 9.18 255691 61 23301 230632 9.18 253933 62 23166 224614 9.35 247780 63 22538 224640 9.12 247178 64 22113 218316 9.20 240429 65 21604 208962 9.37 230566 66 21024 203508 9.36 224532 67 20772 198993 9.45 219765 68 20587 199327 9.36 219914 69 20219 197089 9.30 217308 70 19863 193531 9.31 213394 71 19500 192627 9.19 212127 72 19139 192744 9.03 211883 73 19474 184277 9.56 203751 74 18691 181153 9.35 199844 75 18552 181470 9.27 200022 76 17978 175254 9.30 193232 77 17604 171985 9.29 189589 78 17296 167168 9.38 184464 79 16763 165334 9.21 182097 80 16906 165320 9.28 182226 81 16501 159178 9.39 175679 82 16102 158273 9.23 174375 83 15636 155653 9.13 171289 84 15863 154470 9.31 170333 85 15185 147392 9.34 162577 86 15116 143950 9.50 159066 87 14971 140001 9.66 154972 88 14575 137974 9.55 152549 89 14321 137030 9.46 151351 90 14133 135913 9.42 150046 91 13789 140950 8.91 154739 92 13315 129302 9.34 142617 93 13414 129302 9.40 142716 94 12830 127455 9.15 140285 95 12966 123858 9.48 136824 96 12712 122908 9.37 135620 97 12532 122175 9.30 134707 98 11981 116829 9.30 128810 99 12060 119166 9.19 131226 100 11591 115945 9.09 127536 101 11630 110787 9.50 122417 102 11280 111115 9.22 122395 103 11211 108881 9.34 120092 104 10993 109471 9.13 120464 105 10890 104611 9.43 115501 106 10615 102629 9.37 113244 107 10280 98451 9.45 108731 108 10428 99735 9.47 110163 109 10351 108639 8.70 118990 110 9944 98525 9.17 108469 111 10137 95825 9.57 105962 112 9932 93946 9.56 103878 113 9721 99166 8.93 108887 114 9654 114244 7.79 123898 115 9069 86896 9.45 95965 116 8972 86405 9.41 95377 117 8920 83536 9.65 92456 118 8840 83485 9.57 92325 119 8941 81853 9.85 90794 120 8862 91972 8.79 100834 121 8407 79172 9.60 87579 122 8546 83524 9.28 92070 123 8612 102992 7.72 111604 124 8017 73424 9.84 81441 125 7806 71121 9.89 78927 126 7748 70443 9.91 78191 127 7589 69431 9.85 77020 128 7405 70101 9.55 77506 129 7513 73069 9.32 80582 130 7148 64866 9.93 72014 131 7213 64254 10.09 71467 132 6878 63862 9.72 70740 133 6865 62466 9.90 69331 134 6581 63056 9.45 69637 135 6631 59702 10.00 66333 136 6479 59517 9.82 65996 137 6381 60024 9.61 66405 138 6179 59077 9.47 65256 139 6043 57589 9.50 63632 140 6018 55741 9.74 61759 141 5874 57181 9.32 63055 142 5865 55309 9.59 61174 143 5704 52514 9.80 58218 144 5574 50458 9.95 56032 145 5404 49675 9.81 55079 146 5262 49261 9.65 54523 147 5249 49524 9.58 54773 148 5123 49340 9.41 54463 149 5055 47862 9.55 52917 150 4599 45607 9.16 50206 151 3381 38408 8.09 41789 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 190089 1781646 9.64 1971735 2 97333 456683 17.57 554016 3 70358 674065 9.45 744423 4 62338 608394 9.29 670732 5 24486 876259 2.72 900745 6 23328 1149337 1.99 1172665 7 20923 626681 3.23 647604 8 21061 614089 3.32 635150 9 20464 582017 3.40 602481 10 21035 580839 3.49 601874 11 21128 562564 3.62 583692 12 17900 579300 3.00 597200 13 17177 559401 2.98 576578 14 16078 551842 2.83 567920 15 15715 561796 2.72 577511 16 15255 547174 2.71 562429 17 13918 531436 2.55 545354 18 12879 522708 2.40 535587 19 12803 513363 2.43 526166 20 12153 499901 2.37 512054 21 11332 493664 2.24 504996 22 11688 490044 2.33 501732 23 10722 481760 2.18 492482 24 10327 523700 1.93 534027 25 10204 464442 2.15 474646 26 9021 457403 1.93 466424 27 8642 455049 1.86 463691 28 8479 441003 1.89 449482 29 7793 435560 1.76 443353 30 7524 425918 1.74 433442 31 7139 427160 1.64 434299 32 7521 410840 1.80 418361 33 6918 415566 1.64 422484 34 6541 399563 1.61 406104 35 6149 392150 1.54 398299 36 5704 389433 1.44 395137 37 5849 389632 1.48 395481 38 5330 374269 1.40 379599 39 5275 383414 1.36 388689 40 4620 369045 1.24 373665 41 4381 359013 1.21 363394 42 4144 353286 1.16 357430 43 4074 344540 1.17 348614 44 3911 341667 1.13 345578 45 3649 338920 1.07 342569 46 3499 336197 1.03 339696 47 3172 323244 0.97 326416 48 3097 320556 0.96 323653 49 2924 316727 0.91 319651 50 2849 317357 0.89 320206 51 2674 309142 0.86 311816 52 2630 304872 0.86 307502 53 2454 295618 0.82 298072 54 2260 289435 0.77 291695 55 2279 289647 0.78 291926 56 2160 280853 0.76 283013 57 2125 284265 0.74 286390 58 1903 273927 0.69 275830 59 1969 264113 0.74 266082 60 1876 266676 0.70 268552 61 1835 262653 0.69 264488 62 1651 254798 0.64 256449 63 1630 247937 0.65 249567 64 1565 244977 0.63 246542 65 1680 244646 0.68 246326 66 1533 239154 0.64 240687 67 1417 230706 0.61 232123 68 1409 228005 0.61 229414 69 1451 223450 0.65 224901 70 1322 223009 0.59 224331 71 1356 217709 0.62 219065 72 1394 211370 0.66 212764 73 1320 207487 0.63 208807 74 1355 203064 0.66 204419 75 1316 201916 0.65 203232 76 1255 203184 0.61 204439 77 1209 193296 0.62 194505 78 1235 190668 0.64 191903 79 1151 185873 0.62 187024 80 1255 182805 0.68 184060 81 1125 178172 0.63 179297 82 1108 175644 0.63 176752 83 1165 172180 0.67 173345 84 1169 170532 0.68 171701 85 1081 168203 0.64 169284 86 1025 164398 0.62 165423 87 1094 167674 0.65 168768 88 1079 155716 0.69 156795 89 1070 153880 0.69 154950 90 1029 154132 0.66 155161 91 964 152424 0.63 153388 92 990 154130 0.64 155120 93 1089 161701 0.67 162790 94 982 141774 0.69 142756 95 921 137143 0.67 138064 96 891 134865 0.66 135756 97 888 131715 0.67 132603 98 889 129070 0.68 129959 99 824 127322 0.64 128146 100 823 124838 0.65 125661 101 930 124317 0.74 125247 102 982 127455 0.76 128437 103 806 119713 0.67 120519 104 892 118591 0.75 119483 105 893 115946 0.76 116839 106 772 112548 0.68 113320 107 796 112350 0.70 113146 108 795 108139 0.73 108934 109 778 106592 0.72 107370 110 786 106306 0.73 107092 111 768 102159 0.75 102927 112 779 101483 0.76 102262 113 745 98915 0.75 99660 114 795 99112 0.80 99907 115 744 97504 0.76 98248 116 745 95009 0.78 95754 117 725 93844 0.77 94569 118 754 91803 0.81 92557 119 924 94616 0.97 95540 120 720 90467 0.79 91187 121 751 87765 0.85 88516 122 701 85156 0.82 85857 123 672 84270 0.79 84942 124 705 83563 0.84 84268 125 672 80523 0.83 81195 126 673 79772 0.84 80445 127 665 76924 0.86 77589 128 613 75155 0.81 75768 129 607 74250 0.81 74857 130 660 73140 0.89 73800 131 603 70917 0.84 71520 132 615 70902 0.86 71517 133 626 69823 0.89 70449 134 632 68878 0.91 69510 135 657 67637 0.96 68294 136 672 67081 0.99 67753 137 639 64420 0.98 65059 138 568 63865 0.88 64433 139 858 63721 1.33 64579 140 718 61901 1.15 62619 141 801 61972 1.28 62773 142 1212 68017 1.75 69229 143 608 57843 1.04 58451 144 561 57392 0.97 57953 145 499 56215 0.88 56714 146 552 55413 0.99 55965 147 541 54502 0.98 55043 148 510 53955 0.94 54465 149 459 52150 0.87 52609 150 422 49922 0.84 50344 151 576 40410 1.41 40986 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 502444 1417456 26.17 1919900 2 484777 2084616 18.87 2569393 3 364280 1789827 16.91 2154107 4 349332 1599095 17.93 1948427 5 137335 2103567 6.13 2240902 6 125317 2314825 5.14 2440142 7 119130 2717660 4.20 2836790 8 119709 2523766 4.53 2643475 9 112360 2388326 4.49 2500686 10 109222 2317912 4.50 2427134 11 103376 2249058 4.39 2352434 12 94731 2241994 4.05 2336725 13 92901 2164298 4.12 2257199 14 85406 2111203 3.89 2196609 15 82170 2091592 3.78 2173762 16 82484 2062442 3.85 2144926 17 73838 1985963 3.58 2059801 18 68728 1964089 3.38 2032817 19 64872 1921876 3.27 1986748 20 62390 1891273 3.19 1953663 21 59474 1903254 3.03 1962728 22 60091 1856440 3.14 1916531 23 54920 1797426 2.96 1852346 24 52052 1778429 2.84 1830481 25 51463 1745809 2.86 1797272 26 46060 1707411 2.63 1753471 27 43643 1657459 2.57 1701102 28 43426 1649205 2.57 1692631 29 41164 1672253 2.40 1713417 30 38900 1591883 2.39 1630783 31 36969 1586620 2.28 1623589 32 37037 1553542 2.33 1590579 33 35610 1505989 2.31 1541599 34 33380 1482522 2.20 1515902 35 32056 1474942 2.13 1506998 36 30410 1515015 1.97 1545425 37 30501 1445186 2.07 1475687 38 27675 1418140 1.91 1445815 39 27691 1409805 1.93 1437496 40 25177 1377595 1.79 1402772 41 24367 1365802 1.75 1390169 42 22834 1384530 1.62 1407364 43 22415 1363840 1.62 1386255 44 21649 1346249 1.58 1367898 45 20387 1262388 1.59 1282775 46 19391 1260296 1.52 1279687 47 18536 1245237 1.47 1263773 48 17453 1230360 1.40 1247813 49 17030 1258565 1.34 1275595 50 15745 1183051 1.31 1198796 51 15708 1177868 1.32 1193576 52 15107 1142840 1.30 1157947 53 14649 1146209 1.26 1160858 54 13221 1119750 1.17 1132971 55 12680 1085687 1.15 1098367 56 12066 1081135 1.10 1093201 57 11278 1066780 1.05 1078058 58 10791 1058686 1.01 1069477 59 10803 1039601 1.03 1050404 60 10070 1041972 0.96 1052042 61 9922 1044021 0.94 1053943 62 9952 1040940 0.95 1050892 63 8864 966274 0.91 975138 64 8408 952651 0.87 961059 65 8102 935514 0.86 943616 66 7896 932730 0.84 940626 67 7698 918651 0.83 926349 68 7506 896644 0.83 904150 69 7798 919890 0.84 927688 70 7140 871520 0.81 878660 71 7397 876013 0.84 883410 72 7619 873980 0.86 881599 73 7359 819858 0.89 827217 74 6812 795128 0.85 801940 75 6630 784948 0.84 791578 76 6340 770918 0.82 777258 77 6311 753823 0.83 760134 78 6330 745535 0.84 751865 79 6578 766049 0.85 772627 80 6312 725130 0.86 731442 81 6321 720332 0.87 726653 82 6455 717952 0.89 724407 83 6738 724251 0.92 730989 84 6425 702225 0.91 708650 85 6185 663298 0.92 669483 86 6041 652673 0.92 658714 87 5639 640389 0.87 646028 88 5717 629059 0.90 634776 89 5827 622471 0.93 628298 90 5798 639514 0.90 645312 91 5761 613797 0.93 619558 92 5561 600124 0.92 605685 93 5640 603142 0.93 608782 94 5350 578699 0.92 584049 95 5303 562839 0.93 568142 96 5246 551456 0.94 556702 97 5028 535800 0.93 540828 98 5216 525678 0.98 530894 99 5202 533673 0.97 538875 100 5196 517593 0.99 522789 101 4985 507352 0.97 512337 102 5129 499151 1.02 504280 103 4868 482762 1.00 487630 104 4744 477644 0.98 482388 105 4599 467825 0.97 472424 106 4610 461017 0.99 465627 107 4496 462782 0.96 467278 108 4597 459221 0.99 463818 109 4551 436074 1.03 440625 110 4520 433889 1.03 438409 111 4809 463621 1.03 468430 112 4604 416454 1.09 421058 113 4403 407070 1.07 411473 114 4303 401579 1.06 405882 115 4398 392333 1.11 396731 116 4322 380594 1.12 384916 117 4652 376414 1.22 381066 118 4095 368503 1.10 372598 119 4291 363779 1.17 368070 120 4077 355780 1.13 359857 121 3983 348693 1.13 352676 122 4049 348042 1.15 352091 123 3939 342935 1.14 346874 124 3957 340360 1.15 344317 125 4299 355293 1.20 359592 126 3895 318645 1.21 322540 127 3918 315772 1.23 319690 128 3961 315202 1.24 319163 129 3793 310962 1.21 314755 130 4035 323102 1.23 327137 131 3835 301174 1.26 305009 132 3623 292245 1.22 295868 133 3726 286049 1.29 289775 134 3672 282227 1.28 285899 135 3766 274648 1.35 278414 136 3619 272488 1.31 276107 137 3764 269898 1.38 273662 138 3702 264570 1.38 268272 139 3981 268513 1.46 272494 140 4213 268509 1.54 272722 141 3832 249655 1.51 253487 142 3992 256762 1.53 260754 143 3720 249236 1.47 252956 144 3281 237888 1.36 241169 145 3216 232791 1.36 236007 146 3233 229475 1.39 232708 147 3458 234733 1.45 238191 148 3131 218154 1.41 221285 149 3084 212496 1.43 215580 150 2576 206907 1.23 209483 151 2089 165101 1.25 167190