CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 396872 1094944 26.60 1491816 2 423462 2045220 17.15 2468682 3 360596 2290097 13.60 2650693 4 302104 1665473 15.35 1967577 5 171119 2407286 6.64 2578405 6 140043 1489789 8.59 1629832 7 132907 1387095 8.74 1520002 8 142827 1492074 8.74 1634901 9 143346 1448336 9.01 1591682 10 145975 1457897 9.10 1603872 11 151551 1530196 9.01 1681747 12 152240 1501700 9.20 1653940 13 151636 1493872 9.22 1645508 14 153300 1585450 8.82 1738750 15 152075 1587432 8.74 1739507 16 154267 1537987 9.12 1692254 17 152197 1543245 8.98 1695442 18 151412 1629211 8.50 1780623 19 149598 1639441 8.36 1789039 20 153004 1623023 8.61 1776027 21 150600 1637991 8.42 1788591 22 151207 1617523 8.55 1768730 23 153539 1663315 8.45 1816854 24 149874 1671355 8.23 1821229 25 151898 1689390 8.25 1841288 26 153862 1778027 7.96 1931889 27 151337 1705128 8.15 1856465 28 153911 1703394 8.29 1857305 29 153943 1744890 8.11 1898833 30 152611 1745719 8.04 1898330 31 151785 1731688 8.06 1883473 32 153225 1780683 7.92 1933908 33 154087 1833022 7.75 1987109 34 153980 1829835 7.76 1983815 35 152074 1746386 8.01 1898460 36 151526 1765160 7.91 1916686 37 152756 1747689 8.04 1900445 38 149675 1762631 7.83 1912306 39 152940 1772897 7.94 1925837 40 150082 1748388 7.91 1898470 41 150843 1740162 7.98 1891005 42 148510 1755544 7.80 1904054 43 149474 1755223 7.85 1904697 44 149362 1758189 7.83 1907551 45 148387 1752818 7.80 1901205 46 149394 1754135 7.85 1903529 47 148381 1789497 7.66 1937878 48 148092 1799502 7.60 1947594 49 147544 1758183 7.74 1905727 50 148508 1765685 7.76 1914193 51 148360 1758885 7.78 1907245 52 148304 1751289 7.81 1899593 53 148411 1745373 7.84 1893784 54 147841 1748054 7.80 1895895 55 145959 1748609 7.70 1894568 56 149373 1741959 7.90 1891332 57 148435 1782618 7.69 1931053 58 146829 1751769 7.73 1898598 59 147198 1741086 7.80 1888284 60 144896 1740562 7.68 1885458 61 147100 1731405 7.83 1878505 62 146131 1710250 7.87 1856381 63 144813 1732100 7.72 1876913 64 144414 1721377 7.74 1865791 65 144110 1681701 7.89 1825811 66 142857 1671901 7.87 1814758 67 143508 1654154 7.98 1797662 68 142583 1668655 7.87 1811238 69 142436 1676567 7.83 1819003 70 140956 1680458 7.74 1821414 71 141314 1664692 7.82 1806006 72 140980 1691919 7.69 1832899 73 140037 1632236 7.90 1772273 74 141301 1616030 8.04 1757331 75 138958 1625567 7.88 1764525 76 139371 1613564 7.95 1752935 77 138228 1602449 7.94 1740677 78 137042 1584525 7.96 1721567 79 136072 1588933 7.89 1725005 80 135304 1553065 8.01 1688369 81 134399 1540242 8.03 1674641 82 133767 1532840 8.03 1666607 83 132658 1514108 8.06 1646766 84 131263 1522321 7.94 1653584 85 131360 1487413 8.11 1618773 86 129562 1476085 8.07 1605647 87 129132 1445176 8.20 1574308 88 129241 1438882 8.24 1568123 89 128935 1431816 8.26 1560751 90 127093 1421924 8.20 1549017 91 127146 1419130 8.22 1546276 92 125599 1383661 8.32 1509260 93 124599 1391723 8.22 1516322 94 123908 1372358 8.28 1496266 95 123385 1363696 8.30 1487081 96 121958 1348887 8.29 1470845 97 120497 1347531 8.21 1468028 98 118717 1313160 8.29 1431877 99 118051 1322424 8.20 1440475 100 118049 1295315 8.35 1413364 101 116404 1278918 8.34 1395322 102 115029 1281641 8.24 1396670 103 114540 1274408 8.25 1388948 104 113891 1257331 8.31 1371222 105 111795 1220427 8.39 1332222 106 109796 1201980 8.37 1311776 107 108966 1177481 8.47 1286447 108 109191 1179248 8.47 1288439 109 108505 1194871 8.32 1303376 110 107283 1177338 8.35 1284621 111 107127 1149992 8.52 1257119 112 106141 1127075 8.61 1233216 113 106005 1136523 8.53 1242528 114 106099 1162887 8.36 1268986 115 102438 1086797 8.61 1189235 116 101522 1083526 8.57 1185048 117 100559 1053539 8.71 1154098 118 99033 1041048 8.69 1140081 119 99553 1032786 8.79 1132339 120 98626 1054103 8.56 1152729 121 97118 1010859 8.77 1107977 122 96085 1012616 8.67 1108701 123 96361 1060155 8.33 1156516 124 93860 955838 8.94 1049698 125 92505 944585 8.92 1037090 126 91470 940855 8.86 1032325 127 89211 926089 8.79 1015300 128 89889 926663 8.84 1016552 129 88123 921336 8.73 1009459 130 85821 882451 8.86 968272 131 86599 874020 9.01 960619 132 84268 866589 8.86 950857 133 83659 853680 8.93 937339 134 83341 851308 8.92 934649 135 81764 829091 8.98 910855 136 80301 819813 8.92 900114 137 79864 823951 8.84 903815 138 80085 809936 9.00 890021 139 77681 800204 8.85 877885 140 76907 781577 8.96 858484 141 76536 787932 8.85 864468 142 75543 766570 8.97 842113 143 74200 738074 9.13 812274 144 73820 729493 9.19 803313 145 72175 719974 9.11 792149 146 71271 718175 9.03 789446 147 71458 716747 9.07 788205 148 71558 712516 9.13 784074 149 73742 698834 9.54 772576 150 69860 688958 9.21 758818 151 60621 632670 8.74 693291 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 481368 3726126 11.44 4207494 2 300771 1136552 20.93 1437323 3 186256 1841611 9.18 2027867 4 172310 1556833 9.97 1729143 5 63509 2159137 2.86 2222646 6 60270 2785210 2.12 2845480 7 57348 1718443 3.23 1775791 8 62093 1729806 3.47 1791899 9 51987 1684919 2.99 1736906 10 60016 1744419 3.33 1804435 11 49401 1719536 2.79 1768937 12 47251 1807207 2.55 1854458 13 42917 1788215 2.34 1831132 14 55150 1806067 2.96 1861217 15 40551 1867823 2.12 1908374 16 48053 1856281 2.52 1904334 17 37121 1863777 1.95 1900898 18 31904 1871355 1.68 1903259 19 30362 1909361 1.57 1939723 20 32594 1871257 1.71 1903851 21 29795 1884164 1.56 1913959 22 30175 1923266 1.54 1953441 23 27684 1921039 1.42 1948723 24 27676 2083572 1.31 2111248 25 27489 1941032 1.40 1968521 26 25449 1933850 1.30 1959299 27 25082 1957177 1.27 1982259 28 24660 1948465 1.25 1973125 29 23592 1953229 1.19 1976821 30 22795 1953606 1.15 1976401 31 22706 1964028 1.14 1986734 32 23564 1961084 1.19 1984648 33 22599 1987240 1.12 2009839 34 20975 1969327 1.05 1990302 35 20669 1974618 1.04 1995287 36 19780 2004138 0.98 2023918 37 20492 2018391 1.01 2038883 38 19358 1991452 0.96 2010810 39 19316 2024428 0.95 2043744 40 18332 2008155 0.90 2026487 41 17705 2006555 0.87 2024260 42 17491 2010067 0.86 2027558 43 17416 1999541 0.86 2016957 44 16900 2016814 0.83 2033714 45 16726 2030092 0.82 2046818 46 16357 2024250 0.80 2040607 47 16271 2004052 0.81 2020323 48 15827 2019659 0.78 2035486 49 15776 2020879 0.77 2036655 50 15835 2041094 0.77 2056929 51 15855 2026118 0.78 2041973 52 15565 2031394 0.76 2046959 53 15359 2001593 0.76 2016952 54 15108 2004085 0.75 2019193 55 15446 2017725 0.76 2033171 56 15076 2004894 0.75 2019970 57 15072 2033957 0.74 2049029 58 15040 1997696 0.75 2012736 59 15218 1987261 0.76 2002479 60 15575 2024881 0.76 2040456 61 15543 1992516 0.77 2008059 62 15228 1968846 0.77 1984074 63 15622 1947905 0.80 1963527 64 15903 1959461 0.81 1975364 65 16115 1960439 0.82 1976554 66 15955 1954810 0.81 1970765 67 16308 1923888 0.84 1940196 68 16532 1924293 0.85 1940825 69 16303 1938806 0.83 1955109 70 16299 1921794 0.84 1938093 71 16920 1901693 0.88 1918613 72 16932 1877474 0.89 1894406 73 17216 1877862 0.91 1895078 74 16999 1851322 0.91 1868321 75 17500 1863709 0.93 1881209 76 17842 1882393 0.94 1900235 77 17600 1829467 0.95 1847067 78 17944 1815297 0.98 1833241 79 17927 1784012 0.99 1801939 80 18339 1793723 1.01 1812062 81 18501 1756739 1.04 1775240 82 18633 1743458 1.06 1762091 83 18682 1735459 1.07 1754141 84 18958 1738535 1.08 1757493 85 19187 1717210 1.10 1736397 86 19277 1704259 1.12 1723536 87 19487 1715247 1.12 1734734 88 19482 1657048 1.16 1676530 89 19753 1647854 1.18 1667607 90 19801 1637308 1.19 1657109 91 20093 1625819 1.22 1645912 92 20307 1616047 1.24 1636354 93 20556 1621872 1.25 1642428 94 20382 1566566 1.28 1586948 95 20639 1536659 1.33 1557298 96 20457 1523974 1.32 1544431 97 20524 1508503 1.34 1529027 98 20822 1492912 1.38 1513734 99 20337 1484061 1.35 1504398 100 20563 1464837 1.38 1485400 101 20819 1454120 1.41 1474939 102 21107 1454434 1.43 1475541 103 21081 1422535 1.46 1443616 104 20945 1413589 1.46 1434534 105 20942 1391038 1.48 1411980 106 21005 1372708 1.51 1393713 107 20756 1361942 1.50 1382698 108 20901 1338573 1.54 1359474 109 21131 1327386 1.57 1348517 110 20849 1319350 1.56 1340199 111 21130 1292792 1.61 1313922 112 21175 1286599 1.62 1307774 113 21116 1262480 1.65 1283596 114 21317 1254865 1.67 1276182 115 21328 1247896 1.68 1269224 116 21315 1225818 1.71 1247133 117 21245 1207437 1.73 1228682 118 21365 1193348 1.76 1214713 119 21679 1193402 1.78 1215081 120 21423 1176608 1.79 1198031 121 21414 1161523 1.81 1182937 122 20843 1135173 1.80 1156016 123 20951 1126585 1.83 1147536 124 20924 1113933 1.84 1134857 125 21383 1094733 1.92 1116116 126 20918 1087754 1.89 1108672 127 21328 1062046 1.97 1083374 128 21402 1049747 2.00 1071149 129 20615 1031885 1.96 1052500 130 20408 1015871 1.97 1036279 131 20162 996984 1.98 1017146 132 20500 989596 2.03 1010096 133 20797 977460 2.08 998257 134 20267 961786 2.06 982053 135 20376 954883 2.09 975259 136 20550 952647 2.11 973197 137 19756 917534 2.11 937290 138 19862 907910 2.14 927772 139 20812 903465 2.25 924277 140 20018 885580 2.21 905598 141 20068 879876 2.23 899944 142 21720 888126 2.39 909846 143 19215 845335 2.22 864550 144 19166 834872 2.24 854038 145 19466 824410 2.31 843876 146 19511 824371 2.31 843882 147 19875 816373 2.38 836248 148 19914 814043 2.39 833957 149 20725 797191 2.53 817916 150 23778 800426 2.88 824204 151 29447 720683 3.93 750130 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1571651 4070301 27.86 5641952 2 1494606 5287013 22.04 6781619 3 1045943 5165635 16.84 6211578 4 1014490 4789220 17.48 5803710 5 397469 5889534 6.32 6287003 6 361250 6555873 5.22 6917123 7 351262 7423606 4.52 7774868 8 317405 7256593 4.19 7573998 9 312468 7082793 4.23 7395261 10 284434 7084476 3.86 7368910 11 278043 7047321 3.80 7325364 12 246698 7115427 3.35 7362125 13 248415 7021789 3.42 7270204 14 231537 6941440 3.23 7172977 15 222493 6988080 3.09 7210573 16 227884 6965428 3.17 7193312 17 202019 6868699 2.86 7070718 18 178112 6909537 2.51 7087649 19 168730 6858661 2.40 7027391 20 184858 6834277 2.63 7019135 21 165754 6979160 2.32 7144914 22 168652 6869455 2.40 7038107 23 154140 6823203 2.21 6977343 24 148201 6836757 2.12 6984958 25 149623 6801534 2.15 6951157 26 140281 6796318 2.02 6936599 27 134491 6752993 1.95 6887484 28 134616 6846400 1.93 6981016 29 129410 6945404 1.83 7074814 30 124401 6872787 1.78 6997188 31 122122 6930622 1.73 7052744 32 125622 6907984 1.79 7033606 33 121744 6883616 1.74 7005360 34 114249 6885134 1.63 6999383 35 112171 6916003 1.60 7028174 36 107415 7105145 1.49 7212560 37 110110 7038907 1.54 7149017 38 103222 7015852 1.45 7119074 39 104739 7033699 1.47 7138438 40 98315 7080878 1.37 7179193 41 96568 7139250 1.33 7235818 42 93346 7194831 1.28 7288177 43 91827 7242098 1.25 7333925 44 89889 7255875 1.22 7345764 45 87093 7102584 1.21 7189677 46 85869 7176046 1.18 7261915 47 83952 7181588 1.16 7265540 48 81293 7221309 1.11 7302602 49 81385 7348206 1.10 7429591 50 78919 7215536 1.08 7294455 51 79723 7237846 1.09 7317569 52 78404 7208782 1.08 7287186 53 78915 7252376 1.08 7331291 54 74014 7212037 1.02 7286051 55 73065 7166758 1.01 7239823 56 72034 7193388 0.99 7265422 57 72025 7184171 0.99 7256196 58 72493 7206069 1.00 7278562 59 72074 7201621 0.99 7273695 60 72498 7243541 0.99 7316039 61 72495 7255986 0.99 7328481 62 73402 7245652 1.00 7319054 63 73151 7056241 1.03 7129392 64 72183 7063800 1.01 7135983 65 72496 7035698 1.02 7108194 66 73327 7067205 1.03 7140532 67 74216 7085524 1.04 7159740 68 75245 7008757 1.06 7084002 69 75213 7034108 1.06 7109321 70 75399 6918805 1.08 6994204 71 76830 6949583 1.09 7026413 72 77933 6909129 1.12 6987062 73 78905 6760795 1.15 6839700 74 78341 6723833 1.15 6802174 75 78235 6670658 1.16 6748893 76 79370 6618373 1.19 6697743 77 81146 6569684 1.22 6650830 78 80762 6537320 1.22 6618082 79 82174 6569272 1.24 6651446 80 82096 6449650 1.26 6531746 81 83766 6443194 1.28 6526960 82 84764 6421003 1.30 6505767 83 86292 6360512 1.34 6446804 84 85744 6305446 1.34 6391190 85 86369 6208593 1.37 6294962 86 87851 6186517 1.40 6274368 87 88289 6075905 1.43 6164194 88 89912 6027926 1.47 6117838 89 90950 5998930 1.49 6089880 90 92494 6025697 1.51 6118191 91 94197 5957189 1.56 6051386 92 94457 5903948 1.57 5998405 93 94839 5882299 1.59 5977138 94 94437 5782612 1.61 5877049 95 94726 5717655 1.63 5812381 96 94095 5643298 1.64 5737393 97 94028 5548081 1.67 5642109 98 94934 5495118 1.70 5590052 99 95476 5497658 1.71 5593134 100 96663 5422942 1.75 5519605 101 96081 5364428 1.76 5460509 102 96949 5284659 1.80 5381608 103 97172 5186891 1.84 5284063 104 96504 5159887 1.84 5256391 105 97679 5128875 1.87 5226554 106 98799 5117241 1.89 5216040 107 99022 5069200 1.92 5168222 108 98977 5012491 1.94 5111468 109 98763 4899030 1.98 4997793 110 99187 4851112 2.00 4950299 111 100601 4893154 2.01 4993755 112 99088 4759922 2.04 4859010 113 99592 4665650 2.09 4765242 114 99423 4606979 2.11 4706402 115 100203 4562667 2.15 4662870 116 98445 4477107 2.15 4575552 117 100082 4431854 2.21 4531936 118 98963 4377549 2.21 4476512 119 99964 4353963 2.24 4453927 120 99446 4273460 2.27 4372906 121 97740 4203609 2.27 4301349 122 98480 4158615 2.31 4257095 123 97466 4115061 2.31 4212527 124 97965 4061357 2.36 4159322 125 98885 4074429 2.37 4173314 126 96949 3928557 2.41 4025506 127 96467 3885274 2.42 3981741 128 97308 3855874 2.46 3953182 129 96867 3811373 2.48 3908240 130 97190 3814044 2.48 3911234 131 96233 3729116 2.52 3825349 132 95803 3666639 2.55 3762442 133 97078 3607975 2.62 3705053 134 96449 3556802 2.64 3653251 135 94644 3508907 2.63 3603551 136 94224 3471413 2.64 3565637 137 95893 3448627 2.71 3544520 138 94508 3400810 2.70 3495318 139 95165 3386139 2.73 3481304 140 95632 3331105 2.79 3426737 141 92568 3244266 2.77 3336834 142 94670 3239819 2.84 3334489 143 92166 3169654 2.83 3261820 144 91683 3097589 2.87 3189272 145 92258 3069968 2.92 3162226 146 92088 3036099 2.94 3128187 147 93551 3032128 2.99 3125679 148 94259 2958107 3.09 3052366 149 96163 2929056 3.18 3025219 150 100086 2919743 3.31 3019829 151 118617 2642002 4.30 2760619 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 147790 423942 25.85 571732 2 155009 812371 16.02 967380 3 142770 840541 14.52 983311 4 117430 617624 15.98 735054 5 66249 963170 6.44 1029419 6 51854 514320 9.16 566174 7 50542 477908 9.56 528450 8 54650 483533 10.15 538183 9 54051 468567 10.34 522618 10 55261 459873 10.73 515134 11 55968 498264 10.10 554232 12 55753 470714 10.59 526467 13 55856 453349 10.97 509205 14 54191 489140 9.97 543331 15 53437 462953 10.35 516390 16 52253 452939 10.34 505192 17 51364 445996 10.33 497360 18 50261 450183 10.04 500444 19 49941 460331 9.79 510272 20 48614 448150 9.79 496764 21 47404 445195 9.62 492599 22 46888 425095 9.93 471983 23 46867 435984 9.71 482851 24 45507 427467 9.62 472974 25 44968 428082 9.51 473050 26 44562 449869 9.01 494431 27 42732 417691 9.28 460423 28 43484 412363 9.54 455847 29 41916 419100 9.09 461016 30 40842 413246 8.99 454088 31 40212 400401 9.13 440613 32 40332 405528 9.05 445860 33 40833 426810 8.73 467643 34 40148 443957 8.29 484105 35 37758 384053 8.95 421811 36 37432 381122 8.94 418554 37 37211 375161 9.02 412372 38 35510 370841 8.74 406351 39 35259 370179 8.70 405438 40 34203 358811 8.70 393014 41 33104 350630 8.63 383734 42 32726 351433 8.52 384159 43 32496 351840 8.46 384336 44 32037 345418 8.49 377455 45 31230 336213 8.50 367443 46 30964 331198 8.55 362162 47 30390 340417 8.20 370807 48 29681 340145 8.03 369826 49 29094 320570 8.32 349664 50 28721 318388 8.27 347109 51 28336 313089 8.30 341425 52 28190 308910 8.36 337100 53 27734 303104 8.38 330838 54 27287 302234 8.28 329521 55 26411 294816 8.22 321227 56 26575 291666 8.35 318241 57 26288 294442 8.20 320730 58 25663 288542 8.17 314205 59 25364 283627 8.21 308991 60 24918 282959 8.09 307877 61 25200 281084 8.23 306284 62 24847 273641 8.32 298488 63 24268 278025 8.03 302293 64 23940 272267 8.08 296207 65 23529 259219 8.32 282748 66 23281 253803 8.40 277084 67 22915 248455 8.44 271370 68 22382 248837 8.25 271219 69 22485 248762 8.29 271247 70 22082 247038 8.21 269120 71 21890 244087 8.23 265977 72 21614 248264 8.01 269878 73 20848 235493 8.13 256341 74 21402 231271 8.47 252673 75 21043 232747 8.29 253790 76 20715 226455 8.38 247170 77 20395 222866 8.38 243261 78 19747 217525 8.32 237272 79 19422 216625 8.23 236047 80 19746 214818 8.42 234564 81 19011 208168 8.37 227179 82 18923 207858 8.34 226781 83 18657 203988 8.38 222645 84 18548 204636 8.31 223184 85 18178 195772 8.50 213950 86 17974 191074 8.60 209048 87 17591 185783 8.65 203374 88 17261 185045 8.53 202306 89 17154 183805 8.54 200959 90 16872 183601 8.42 200473 91 16934 189035 8.22 205969 92 16329 175795 8.50 192124 93 16425 175935 8.54 192360 94 16025 174265 8.42 190290 95 15852 170295 8.52 186147 96 15645 168403 8.50 184048 97 15214 170393 8.20 185607 98 15079 161592 8.54 176671 99 14952 168474 8.15 183426 100 14775 161539 8.38 176314 101 14654 156070 8.58 170724 102 14199 157216 8.28 171415 103 14115 157425 8.23 171540 104 13975 156997 8.17 170972 105 13678 148576 8.43 162254 106 13448 143600 8.56 157048 107 13356 139615 8.73 152971 108 13515 140968 8.75 154483 109 13407 152116 8.10 165523 110 12732 142587 8.20 155319 111 13010 137744 8.63 150754 112 12938 134011 8.80 146949 113 12863 140578 8.38 153441 114 13120 161618 7.51 174738 115 12143 126767 8.74 138910 116 11913 127742 8.53 139655 117 11744 120801 8.86 132545 118 11632 121722 8.72 133354 119 11782 119582 8.97 131364 120 11850 130247 8.34 142097 121 11560 116373 9.04 127933 122 11158 120942 8.45 132100 123 11671 146527 7.38 158198 124 10951 108953 9.13 119904 125 10671 106368 9.12 117039 126 10576 105735 9.09 116311 127 10314 104504 8.98 114818 128 10341 104991 8.97 115332 129 10128 108260 8.55 118388 130 9687 97318 9.05 107005 131 9706 96651 9.13 106357 132 9377 96935 8.82 106312 133 9291 93930 9.00 103221 134 9422 96850 8.87 106272 135 9067 91525 9.01 100592 136 9066 90784 9.08 99850 137 9141 92696 8.98 101837 138 8627 90591 8.69 99218 139 8717 89016 8.92 97733 140 8400 86221 8.88 94621 141 8280 89398 8.48 97678 142 8181 87532 8.55 95713 143 8131 81236 9.10 89367 144 8155 79273 9.33 87428 145 7928 78944 9.13 86872 146 7642 78053 8.92 85695 147 7735 78295 8.99 86030 148 7434 76901 8.81 84335 149 7164 75145 8.70 82309 150 6719 71593 8.58 78312 151 4925 57951 7.83 62876 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 199942 1572748 11.28 1772690 2 118734 413783 22.30 532517 3 83698 616376 11.96 700074 4 75711 552414 12.05 628125 5 30694 808388 3.66 839082 6 29591 1039467 2.77 1069058 7 26955 574237 4.48 601192 8 27087 572505 4.52 599592 9 26241 540680 4.63 566921 10 25512 553384 4.41 578896 11 24526 529860 4.42 554386 12 22056 552061 3.84 574117 13 21714 534917 3.90 556631 14 19935 534914 3.59 554849 15 19132 554839 3.33 573971 16 18347 537153 3.30 555500 17 17276 522578 3.20 539854 18 15706 519403 2.94 535109 19 15288 514660 2.88 529948 20 14721 504796 2.83 519517 21 13879 501705 2.69 515584 22 14033 498431 2.74 512464 23 12636 496275 2.48 508911 24 12542 563641 2.18 576183 25 11825 481226 2.40 493051 26 10683 477344 2.19 488027 27 10605 480558 2.16 491163 28 9935 467142 2.08 477077 29 9447 464925 1.99 474372 30 8984 455959 1.93 464943 31 8601 456743 1.85 465344 32 8900 444269 1.96 453169 33 8321 450314 1.81 458635 34 7555 434325 1.71 441880 35 7269 429523 1.66 436792 36 6863 427645 1.58 434508 37 7270 432899 1.65 440169 38 6647 415379 1.58 422026 39 6229 429055 1.43 435284 40 5702 409874 1.37 415576 41 5535 404802 1.35 410337 42 5080 398756 1.26 403836 43 4916 392380 1.24 397296 44 4699 392313 1.18 397012 45 4577 390756 1.16 395333 46 4345 385223 1.12 389568 47 4055 372183 1.08 376238 48 3884 371819 1.03 375703 49 3641 370359 0.97 374000 50 3504 371414 0.93 374918 51 3528 362021 0.97 365549 52 3422 360128 0.94 363550 53 3212 351033 0.91 354245 54 2966 343176 0.86 346142 55 2997 345227 0.86 348224 56 2794 336996 0.82 339790 57 2793 343352 0.81 346145 58 2624 332055 0.78 334679 59 2590 321442 0.80 324032 60 2540 327636 0.77 330176 61 2413 319787 0.75 322200 62 2273 311723 0.72 313996 63 2268 304709 0.74 306977 64 2286 302978 0.75 305264 65 2258 304643 0.74 306901 66 2058 297923 0.69 299981 67 2029 289631 0.70 291660 68 2162 286278 0.75 288440 69 2087 282723 0.73 284810 70 2021 282702 0.71 284723 71 2013 276277 0.72 278290 72 2082 268634 0.77 270716 73 2027 267027 0.75 269054 74 1925 259587 0.74 261512 75 1953 259944 0.75 261897 76 1905 264249 0.72 266154 77 1882 250111 0.75 251993 78 1815 247679 0.73 249494 79 1842 241176 0.76 243018 80 1835 240369 0.76 242204 81 1838 233763 0.78 235601 82 1809 230584 0.78 232393 83 1746 228619 0.76 230365 84 1861 227601 0.81 229462 85 1675 222674 0.75 224349 86 1742 221115 0.78 222857 87 1583 222824 0.71 224407 88 1621 209374 0.77 210995 89 1563 208540 0.74 210103 90 1690 207148 0.81 208838 91 1611 206315 0.77 207926 92 1634 208099 0.78 209733 93 1631 217066 0.75 218697 94 1475 194188 0.75 195663 95 1471 187228 0.78 188699 96 1454 185761 0.78 187215 97 1439 181975 0.78 183414 98 1485 178988 0.82 180473 99 1458 176787 0.82 178245 100 1399 174261 0.80 175660 101 1368 173193 0.78 174561 102 1533 177182 0.86 178715 103 1348 168269 0.79 169617 104 1406 165972 0.84 167378 105 1362 164132 0.82 165494 106 1345 159951 0.83 161296 107 1378 159760 0.86 161138 108 1284 153834 0.83 155118 109 1276 153683 0.82 154959 110 1204 153599 0.78 154803 111 1265 148275 0.85 149540 112 1298 147558 0.87 148856 113 1353 143410 0.93 144763 114 1204 143399 0.83 144603 115 1247 142477 0.87 143724 116 1276 139350 0.91 140626 117 1276 137331 0.92 138607 118 1230 134871 0.90 136101 119 1394 138382 1.00 139776 120 1170 133231 0.87 134401 121 1169 130215 0.89 131384 122 1178 126735 0.92 127913 123 1195 126132 0.94 127327 124 1171 124439 0.93 125610 125 1179 121460 0.96 122639 126 1175 120435 0.97 121610 127 1110 116954 0.94 118064 128 1074 115592 0.92 116666 129 1026 112873 0.90 113899 130 1098 110353 0.99 111451 131 995 108724 0.91 109719 132 1062 108000 0.97 109062 133 1050 106998 0.97 108048 134 1083 105507 1.02 106590 135 1151 103979 1.09 105130 136 1138 105211 1.07 106349 137 1090 99233 1.09 100323 138 1110 98465 1.11 99575 139 1362 99243 1.35 100605 140 1147 96298 1.18 97445 141 1373 97498 1.39 98871 142 1903 104892 1.78 106795 143 1091 91304 1.18 92395 144 963 90552 1.05 91515 145 947 89290 1.05 90237 146 946 88397 1.06 89343 147 881 86382 1.01 87263 148 806 86656 0.92 87462 149 788 83257 0.94 84045 150 768 79067 0.96 79835 151 878 62446 1.39 63324 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 605129 1369018 30.65 1974147 2 586112 1949986 23.11 2536098 3 445389 1696157 20.80 2141546 4 424836 1533423 21.69 1958259 5 169572 2017931 7.75 2187503 6 155861 2229256 6.53 2385117 7 150100 2613484 5.43 2763584 8 150354 2433616 5.82 2583970 9 145591 2329820 5.88 2475411 10 138503 2292584 5.70 2431087 11 127982 2245890 5.39 2373872 12 118091 2275088 4.93 2393179 13 116913 2199672 5.05 2316585 14 106781 2155744 4.72 2262525 15 101187 2166328 4.46 2267515 16 99139 2149788 4.41 2248927 17 90277 2081667 4.16 2171944 18 83794 2064429 3.90 2148223 19 78527 2034086 3.72 2112613 20 74341 2011835 3.56 2086176 21 71341 2044065 3.37 2115406 22 72002 1984226 3.50 2056228 23 65356 1927610 3.28 1992966 24 62624 1917427 3.16 1980051 25 61237 1880715 3.15 1941952 26 54453 1853103 2.85 1907556 27 51066 1794016 2.77 1845082 28 50674 1806185 2.73 1856859 29 47830 1844576 2.53 1892406 30 45446 1751430 2.53 1796876 31 43307 1752502 2.41 1795809 32 43826 1723418 2.48 1767244 33 41622 1668847 2.43 1710469 34 38939 1645952 2.31 1684891 35 38122 1644593 2.27 1682715 36 35654 1711817 2.04 1747471 37 35417 1628058 2.13 1663475 38 32582 1601474 1.99 1634056 39 32532 1597207 2.00 1629739 40 29250 1568199 1.83 1597449 41 28065 1567142 1.76 1595207 42 26867 1595809 1.66 1622676 43 26257 1580791 1.63 1607048 44 24844 1562855 1.56 1587699 45 23770 1459897 1.60 1483667 46 22401 1460681 1.51 1483082 47 21623 1450808 1.47 1472431 48 20426 1449493 1.39 1469919 49 19901 1501101 1.31 1521002 50 18496 1405061 1.30 1423557 51 18713 1404147 1.32 1422860 52 17791 1363863 1.29 1381654 53 17416 1369825 1.26 1387241 54 15380 1344723 1.13 1360103 55 14856 1305881 1.12 1320737 56 14298 1304363 1.08 1318661 57 13546 1296406 1.03 1309952 58 13195 1295300 1.01 1308495 59 13526 1275513 1.05 1289039 60 12813 1282711 0.99 1295524 61 12321 1287443 0.95 1299764 62 12402 1289301 0.95 1301703 63 11258 1196791 0.93 1208049 64 10851 1187760 0.91 1198611 65 10822 1172761 0.91 1183583 66 10395 1172353 0.88 1182748 67 10018 1164238 0.85 1174256 68 9934 1139411 0.86 1149345 69 10155 1171138 0.86 1181293 70 9624 1112170 0.86 1121794 71 9945 1116664 0.88 1126609 72 10067 1118295 0.89 1128362 73 9785 1051597 0.92 1061382 74 9223 1032401 0.89 1041624 75 8710 1016888 0.85 1025598 76 8745 1002653 0.86 1011398 77 8652 986076 0.87 994728 78 8495 976247 0.86 984742 79 8980 1008412 0.88 1017392 80 8656 958828 0.89 967484 81 8730 956656 0.90 965386 82 8901 960462 0.92 969363 83 9034 961308 0.93 970342 84 8967 934863 0.95 943830 85 8347 887448 0.93 895795 86 8301 879189 0.94 887490 87 7931 863139 0.91 871070 88 7938 855340 0.92 863278 89 7897 847262 0.92 855159 90 8189 875100 0.93 883289 91 8359 848851 0.98 857210 92 8060 829896 0.96 837956 93 8118 839457 0.96 847575 94 7558 800906 0.93 808464 95 7557 783183 0.96 790740 96 7767 768516 1.00 776283 97 7442 747565 0.99 755007 98 7384 736366 0.99 743750 99 7508 746889 1.00 754397 100 7698 727791 1.05 735489 101 7359 714836 1.02 722195 102 7125 705188 1.00 712313 103 7038 682975 1.02 690013 104 6991 678704 1.02 685695 105 6837 671070 1.01 677907 106 6757 666593 1.00 673350 107 6762 669200 1.00 675962 108 6907 661875 1.03 668782 109 6673 632224 1.04 638897 110 6718 631277 1.05 637995 111 7159 669956 1.06 677115 112 6707 614422 1.08 621129 113 6647 595851 1.10 602498 114 6378 589403 1.07 595781 115 6418 579921 1.09 586339 116 6472 562835 1.14 569307 117 6729 558489 1.19 565218 118 6310 550074 1.13 556384 119 6451 544395 1.17 550846 120 6305 532179 1.17 538484 121 5880 521013 1.12 526893 122 6057 519778 1.15 525835 123 6000 515526 1.15 521526 124 6057 513746 1.17 519803 125 6228 533079 1.15 539307 126 5849 484222 1.19 490071 127 5960 479362 1.23 485322 128 5865 479965 1.21 485830 129 5760 474536 1.20 480296 130 6005 491398 1.21 497403 131 5854 461509 1.25 467363 132 5602 450525 1.23 456127 133 5693 440671 1.28 446364 134 5820 436201 1.32 442021 135 5592 427550 1.29 433142 136 5434 424251 1.26 429685 137 5701 421110 1.34 426811 138 5486 414540 1.31 420026 139 5810 418010 1.37 423820 140 6404 416035 1.52 422439 141 5659 393287 1.42 398946 142 5921 399487 1.46 405408 143 5535 387740 1.41 393275 144 4961 373865 1.31 378826 145 5035 369490 1.34 374525 146 5044 363866 1.37 368910 147 5144 369566 1.37 374710 148 4709 347301 1.34 352010 149 4490 339638 1.30 344128 150 3850 327003 1.16 330853 151 3040 256642 1.17 259682