CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 579044 1582990 26.78 2162034 2 623209 2820016 18.10 3443225 3 535700 3185683 14.40 3721383 4 454501 2274218 16.66 2728719 5 266960 3165567 7.78 3432527 6 221366 2043584 9.77 2264950 7 211955 1917718 9.95 2129673 8 227370 2054882 9.96 2282252 9 229228 2002896 10.27 2232124 10 240028 2007779 10.68 2247807 11 247300 2089827 10.58 2337127 12 252928 2085630 10.82 2338558 13 248766 2071780 10.72 2320546 14 251168 2182102 10.32 2433270 15 253270 2182404 10.40 2435674 16 255289 2130995 10.70 2386284 17 254082 2140419 10.61 2394501 18 252799 2254117 10.08 2506916 19 251671 2233632 10.13 2485303 20 255232 2234245 10.25 2489477 21 253492 2258660 10.09 2512152 22 254745 2234568 10.23 2489313 23 258605 2293374 10.13 2551979 24 254097 2298873 9.95 2552970 25 256591 2318467 9.96 2575058 26 258161 2403807 9.70 2661968 27 255467 2336114 9.86 2591581 28 259647 2335319 10.01 2594966 29 260234 2385010 9.84 2645244 30 257587 2385333 9.75 2642920 31 256506 2370587 9.76 2627093 32 258920 2416325 9.68 2675245 33 261865 2478907 9.55 2740772 34 262136 2469983 9.59 2732119 35 255834 2401686 9.63 2657520 36 255463 2419807 9.55 2675270 37 256984 2403008 9.66 2659992 38 253829 2418771 9.50 2672600 39 257728 2434726 9.57 2692454 40 253784 2394970 9.58 2648754 41 256235 2394011 9.67 2650246 42 252448 2408146 9.49 2660594 43 253493 2405059 9.54 2658552 44 253245 2414213 9.49 2667458 45 251429 2410464 9.45 2661893 46 253472 2409843 9.52 2663315 47 252251 2443218 9.36 2695469 48 253313 2459157 9.34 2712470 49 250104 2405634 9.42 2655738 50 252440 2421034 9.44 2673474 51 251359 2411053 9.44 2662412 52 251830 2398980 9.50 2650810 53 252521 2394361 9.54 2646882 54 251996 2394491 9.52 2646487 55 248622 2388944 9.43 2637566 56 252007 2380637 9.57 2632644 57 249629 2427425 9.32 2677054 58 247945 2394905 9.38 2642850 59 248576 2381519 9.45 2630095 60 246579 2377806 9.40 2624385 61 248808 2365580 9.52 2614388 62 247260 2338635 9.56 2585895 63 244853 2359331 9.40 2604184 64 242753 2339121 9.40 2581874 65 242812 2294627 9.57 2537439 66 240226 2279054 9.54 2519280 67 238553 2258156 9.55 2496709 68 236905 2272588 9.44 2509493 69 237756 2267145 9.49 2504901 70 234450 2263210 9.39 2497660 71 234023 2247422 9.43 2481445 72 234107 2265721 9.36 2499828 73 231373 2200202 9.52 2431575 74 233658 2180735 9.68 2414393 75 229355 2190610 9.48 2419965 76 229184 2169247 9.56 2398431 77 227247 2154790 9.54 2382037 78 225099 2129364 9.56 2354463 79 221045 2117784 9.45 2338829 80 220683 2085217 9.57 2305900 81 219616 2069776 9.59 2289392 82 217375 2053180 9.57 2270555 83 216526 2024939 9.66 2241465 84 215309 2030144 9.59 2245453 85 211867 1987997 9.63 2199864 86 210704 1967633 9.67 2178337 87 209640 1931890 9.79 2141530 88 207071 1914784 9.76 2121855 89 207017 1899346 9.83 2106363 90 203850 1886796 9.75 2090646 91 201928 1874611 9.72 2076539 92 199393 1834845 9.80 2034238 93 199312 1837232 9.79 2036544 94 197183 1808279 9.83 2005462 95 195316 1791523 9.83 1986839 96 192736 1772593 9.81 1965329 97 189621 1757221 9.74 1946842 98 186484 1715987 9.80 1902471 99 185551 1722102 9.73 1907653 100 182662 1685757 9.78 1868419 101 182357 1664725 9.87 1847082 102 178912 1654201 9.76 1833113 103 177363 1633013 9.80 1810376 104 176015 1619942 9.80 1795957 105 173186 1574205 9.91 1747391 106 170746 1557618 9.88 1728364 107 168494 1522056 9.97 1690550 108 167726 1516580 9.96 1684306 109 166034 1523967 9.82 1690001 110 163791 1494152 9.88 1657943 111 162749 1467269 9.98 1630018 112 161446 1435480 10.11 1596926 113 158588 1441135 9.91 1599723 114 158166 1457924 9.79 1616090 115 154306 1377103 10.08 1531409 116 153473 1367627 10.09 1521100 117 150004 1335399 10.10 1485403 118 147984 1314093 10.12 1462077 119 148295 1300706 10.23 1449001 120 146329 1311542 10.04 1457871 121 144339 1267620 10.22 1411959 122 141636 1260591 10.10 1402227 123 142676 1295824 9.92 1438500 124 137855 1195236 10.34 1333091 125 135644 1177699 10.33 1313343 126 133963 1166076 10.30 1300039 127 131356 1148161 10.27 1279517 128 131379 1139737 10.34 1271116 129 128382 1125541 10.24 1253923 130 124708 1088093 10.28 1212801 131 123922 1074737 10.34 1198659 132 122033 1060878 10.32 1182911 133 120009 1042764 10.32 1162773 134 118378 1029795 10.31 1148173 135 116495 1009240 10.35 1125735 136 114747 997162 10.32 1111909 137 113966 989795 10.33 1103761 138 112397 976830 10.32 1089227 139 109625 954113 10.31 1063738 140 108325 937703 10.36 1046028 141 107131 933721 10.29 1040852 142 105681 910676 10.40 1016357 143 102585 881029 10.43 983614 144 102310 869030 10.53 971340 145 99527 853181 10.45 952708 146 99166 846339 10.49 945505 147 98152 842909 10.43 941061 148 98143 833920 10.53 932063 149 99736 820272 10.84 920008 150 94797 808296 10.50 903093 151 83839 751215 10.04 835054 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 654619 5106614 11.36 5761233 2 411132 1723798 19.26 2134930 3 260569 2582014 9.17 2842583 4 235626 2185301 9.73 2420927 5 86312 3007653 2.79 3093965 6 81982 3813666 2.10 3895648 7 76495 2411731 3.07 2488226 8 79384 2424605 3.17 2503989 9 69976 2382114 2.85 2452090 10 77885 2430449 3.11 2508334 11 72743 2434468 2.90 2507211 12 62572 2552731 2.39 2615303 13 60139 2539787 2.31 2599926 14 68322 2558213 2.60 2626535 15 55791 2629234 2.08 2685025 16 61940 2627434 2.30 2689374 17 51059 2639893 1.90 2690952 18 46260 2646456 1.72 2692716 19 44117 2679387 1.62 2723504 20 45238 2643422 1.68 2688660 21 42100 2655669 1.56 2697769 22 43385 2704744 1.58 2748129 23 39689 2704299 1.45 2743988 24 39443 2857803 1.36 2897246 25 39090 2725492 1.41 2764582 26 36504 2720678 1.32 2757182 27 35190 2745648 1.27 2780838 28 35447 2739156 1.28 2774603 29 33415 2748779 1.20 2782194 30 32057 2746691 1.15 2778748 31 31195 2766046 1.12 2797241 32 33067 2757494 1.18 2790561 33 31496 2790718 1.12 2822214 34 29396 2775993 1.05 2805389 35 28886 2779478 1.03 2808364 36 27264 2814534 0.96 2841798 37 28439 2830101 0.99 2858540 38 26389 2804156 0.93 2830545 39 26668 2843492 0.93 2870160 40 25140 2827055 0.88 2852195 41 24448 2822298 0.86 2846746 42 23855 2825651 0.84 2849506 43 23522 2815815 0.83 2839337 44 23081 2833661 0.81 2856742 45 22621 2849934 0.79 2872555 46 22194 2849202 0.77 2871396 47 22025 2829004 0.77 2851029 48 21507 2848251 0.75 2869758 49 21097 2840497 0.74 2861594 50 21093 2863162 0.73 2884255 51 20787 2841192 0.73 2861979 52 20741 2844104 0.72 2864845 53 20453 2812845 0.72 2833298 54 19845 2815347 0.70 2835192 55 20226 2825196 0.71 2845422 56 19880 2809400 0.70 2829280 57 19709 2836512 0.69 2856221 58 20026 2797774 0.71 2817800 59 19921 2789997 0.71 2809918 60 19910 2811241 0.70 2831151 61 20120 2783524 0.72 2803644 62 20355 2749532 0.73 2769887 63 20438 2726474 0.74 2746912 64 20451 2734501 0.74 2754952 65 20813 2732132 0.76 2752945 66 20688 2712705 0.76 2733393 67 20976 2682854 0.78 2703830 68 21367 2678222 0.79 2699589 69 21700 2679040 0.80 2700740 70 21631 2662614 0.81 2684245 71 21727 2637772 0.82 2659499 72 22152 2605269 0.84 2627421 73 22580 2595418 0.86 2617998 74 22366 2563209 0.87 2585575 75 22598 2570329 0.87 2592927 76 22829 2573363 0.88 2596192 77 23228 2516816 0.91 2540044 78 23257 2502072 0.92 2525329 79 23304 2462454 0.94 2485758 80 23498 2452669 0.95 2476167 81 23993 2416022 0.98 2440015 82 24322 2394357 1.01 2418679 83 24077 2379771 1.00 2403848 84 24576 2368214 1.03 2392790 85 24906 2339835 1.05 2364741 86 24687 2319016 1.05 2343703 87 25126 2320166 1.07 2345292 88 25060 2255912 1.10 2280972 89 25289 2237384 1.12 2262673 90 25354 2214918 1.13 2240272 91 25979 2195689 1.17 2221668 92 26192 2173236 1.19 2199428 93 26513 2184693 1.20 2211206 94 25985 2113517 1.21 2139502 95 25895 2076342 1.23 2102237 96 26223 2054593 1.26 2080816 97 25958 2026038 1.27 2051996 98 26404 2004521 1.30 2030925 99 25942 1984182 1.29 2010124 100 26594 1955490 1.34 1982084 101 26499 1938531 1.35 1965030 102 26757 1929538 1.37 1956295 103 26787 1886582 1.40 1913369 104 26796 1871226 1.41 1898022 105 26619 1845079 1.42 1871698 106 26570 1814943 1.44 1841513 107 26505 1798127 1.45 1824632 108 26524 1763558 1.48 1790082 109 26670 1745083 1.51 1771753 110 26355 1725071 1.50 1751426 111 26704 1694540 1.55 1721244 112 26417 1678567 1.55 1704984 113 26521 1644708 1.59 1671229 114 26386 1628986 1.59 1655372 115 26786 1610484 1.64 1637270 116 26622 1584763 1.65 1611385 117 26200 1560777 1.65 1586977 118 26447 1538169 1.69 1564616 119 26648 1531572 1.71 1558220 120 26337 1509198 1.72 1535535 121 26337 1477471 1.75 1503808 122 25967 1447664 1.76 1473631 123 26059 1434278 1.78 1460337 124 25842 1412470 1.80 1438312 125 25818 1387318 1.83 1413136 126 25935 1369875 1.86 1395810 127 25709 1340751 1.88 1366460 128 25699 1319131 1.91 1344830 129 25500 1298307 1.93 1323807 130 25061 1280578 1.92 1305639 131 24690 1251984 1.93 1276674 132 25099 1236843 1.99 1261942 133 24743 1217601 1.99 1242344 134 24925 1197384 2.04 1222309 135 24567 1181490 2.04 1206057 136 24494 1168171 2.05 1192665 137 24279 1134527 2.10 1158806 138 24104 1118679 2.11 1142783 139 24684 1105778 2.18 1130462 140 24094 1082907 2.18 1107001 141 23783 1070179 2.17 1093962 142 25015 1072856 2.28 1097871 143 22983 1027113 2.19 1050096 144 22839 1012189 2.21 1035028 145 22725 994939 2.23 1017664 146 22844 989063 2.26 1011907 147 23688 977211 2.37 1000899 148 23411 970750 2.35 994161 149 24642 949179 2.53 973821 150 28496 950077 2.91 978573 151 35787 869924 3.95 905711 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2244122 5860449 27.69 8104571 2 2087314 7417059 21.96 9504373 3 1494912 7200395 17.19 8695307 4 1438630 6792611 17.48 8231241 5 560999 8275847 6.35 8836846 6 512254 9065616 5.35 9577870 7 483734 10223235 4.52 10706969 8 452806 10014177 4.33 10466983 9 432139 9770402 4.24 10202541 10 398692 9734211 3.93 10132903 11 389426 9698138 3.86 10087564 12 349679 9769233 3.46 10118912 13 353116 9681804 3.52 10034920 14 326650 9601487 3.29 9928137 15 314005 9625736 3.16 9939741 16 328527 9574432 3.32 9902959 17 287344 9453546 2.95 9740890 18 263612 9489157 2.70 9752769 19 253674 9438039 2.62 9691713 20 262827 9424631 2.71 9687458 21 242507 9567079 2.47 9809586 22 247120 9471058 2.54 9718178 23 227617 9441215 2.35 9668832 24 219073 9433552 2.27 9652625 25 220812 9420991 2.29 9641803 26 207134 9432451 2.15 9639585 27 198941 9397614 2.07 9596555 28 198856 9489794 2.05 9688650 29 189832 9617843 1.94 9807675 30 184453 9560762 1.89 9745215 31 179513 9630753 1.83 9810266 32 184370 9616878 1.88 9801248 33 177994 9606697 1.82 9784691 34 168358 9632599 1.72 9800957 35 164675 9676280 1.67 9840955 36 157527 9875410 1.57 10032937 37 161017 9808039 1.62 9969056 38 151311 9793563 1.52 9944874 39 150804 9820742 1.51 9971546 40 141538 9896118 1.41 10037656 41 139413 9953387 1.38 10092800 42 134550 10018957 1.33 10153507 43 132139 10063075 1.30 10195214 44 128252 10091825 1.25 10220077 45 124864 9945148 1.24 10070012 46 122065 10025737 1.20 10147802 47 119119 10034709 1.17 10153828 48 114573 10056350 1.13 10170923 49 114025 10163154 1.11 10277179 50 110693 10033719 1.09 10144412 51 110517 10040782 1.09 10151299 52 109002 10010798 1.08 10119800 53 108935 10059347 1.07 10168282 54 101864 10017858 1.01 10119722 55 100590 9968038 1.00 10068628 56 98670 9975238 0.98 10073908 57 98236 9953089 0.98 10051325 58 97701 9959209 0.97 10056910 59 97786 9939445 0.97 10037231 60 96386 9964308 0.96 10060694 61 97542 9952819 0.97 10050361 62 97164 9939256 0.97 10036420 63 97541 9734185 0.99 9831726 64 95076 9726402 0.97 9821478 65 96833 9678060 0.99 9774893 66 96429 9687367 0.99 9783796 67 97966 9675431 1.00 9773397 68 98981 9588055 1.02 9687036 69 99497 9595094 1.03 9694591 70 98961 9446373 1.04 9545334 71 99964 9449621 1.05 9549585 72 101359 9377698 1.07 9479057 73 102949 9213280 1.11 9316229 74 101481 9139240 1.10 9240721 75 102141 9074928 1.11 9177069 76 103392 8993082 1.14 9096474 77 105012 8915784 1.16 9020796 78 105362 8853809 1.18 8959171 79 107320 8841846 1.20 8949166 80 107427 8700124 1.22 8807551 81 108701 8656717 1.24 8765418 82 110378 8612205 1.27 8722583 83 111379 8539676 1.29 8651055 84 111772 8450148 1.31 8561920 85 112303 8316652 1.33 8428955 86 113452 8263512 1.35 8376964 87 114035 8127253 1.38 8241288 88 115714 8043171 1.42 8158885 89 116739 7985994 1.44 8102733 90 118588 7965978 1.47 8084566 91 120809 7861143 1.51 7981952 92 121344 7769104 1.54 7890448 93 121102 7717157 1.55 7838259 94 120947 7592989 1.57 7713936 95 122019 7496128 1.60 7618147 96 120888 7391156 1.61 7512044 97 119963 7275972 1.62 7395935 98 121644 7185541 1.66 7307185 99 122138 7152503 1.68 7274641 100 123342 7048246 1.72 7171588 101 122019 6967372 1.72 7089391 102 122539 6861102 1.75 6983641 103 122275 6733989 1.78 6856264 104 122659 6679111 1.80 6801770 105 123456 6613247 1.83 6736703 106 123167 6564813 1.84 6687980 107 122659 6481506 1.86 6604165 108 123362 6395414 1.89 6518776 109 122731 6260916 1.92 6383647 110 124060 6178630 1.97 6302690 111 125261 6195843 1.98 6321104 112 124574 6036511 2.02 6161085 113 123630 5923438 2.04 6047068 114 122636 5830554 2.06 5953190 115 122642 5754777 2.09 5877419 116 122773 5651151 2.13 5773924 117 122471 5571691 2.15 5694162 118 122091 5493786 2.17 5615877 119 122485 5430388 2.21 5552873 120 121428 5327599 2.23 5449027 121 120360 5247973 2.24 5368333 122 120345 5172146 2.27 5292491 123 120135 5103179 2.30 5223314 124 119194 5021829 2.32 5141023 125 120584 5008460 2.35 5129044 126 118552 4849403 2.39 4967955 127 117519 4783536 2.40 4901055 128 117776 4723468 2.43 4841244 129 117470 4659677 2.46 4777147 130 116963 4638431 2.46 4755394 131 116770 4524801 2.52 4641571 132 115255 4443865 2.53 4559120 133 115980 4366028 2.59 4482008 134 114226 4289142 2.59 4403368 135 113089 4220772 2.61 4333861 136 113098 4163081 2.64 4276179 137 113376 4121734 2.68 4235110 138 111941 4052446 2.69 4164387 139 112727 4016122 2.73 4128849 140 113302 3946475 2.79 4059777 141 109830 3839650 2.78 3949480 142 111603 3812945 2.84 3924548 143 109532 3728563 2.85 3838095 144 108392 3648842 2.88 3757234 145 109501 3599915 2.95 3709416 146 108091 3553938 2.95 3662029 147 110708 3536179 3.04 3646887 148 111428 3455950 3.12 3567378 149 113685 3411137 3.23 3524822 150 118467 3400422 3.37 3518889 151 142949 3113298 4.39 3256247 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 163081 506151 24.37 669232 2 175531 978430 15.21 1153961 3 159291 1020143 13.51 1179434 4 131973 732689 15.26 864662 5 81772 1137323 6.71 1219095 6 61621 609403 9.18 671024 7 60195 570935 9.54 631130 8 65900 572850 10.32 638750 9 66441 552348 10.74 618789 10 68068 539592 11.20 607660 11 69386 576288 10.75 645674 12 70836 546119 11.48 616955 13 69390 524249 11.69 593639 14 68267 555470 10.94 623737 15 67695 527788 11.37 595483 16 66065 516219 11.35 582284 17 65008 508682 11.33 573690 18 63780 508715 11.14 572495 19 62743 509906 10.96 572649 20 61410 498902 10.96 560312 21 60947 496271 10.94 557218 22 59651 472536 11.21 532187 23 59913 479427 11.11 539340 24 57651 470720 10.91 528371 25 56979 470081 10.81 527060 26 56028 484867 10.36 540895 27 54797 450612 10.84 505409 28 54708 442987 10.99 497695 29 53982 449109 10.73 503091 30 51495 440667 10.46 492162 31 50953 425336 10.70 476289 32 51018 428421 10.64 479439 33 51263 447296 10.28 498559 34 51718 461533 10.08 513251 35 47593 407868 10.45 455461 36 46288 399577 10.38 445865 37 46601 389141 10.69 435742 38 44072 386243 10.24 430315 39 44083 384715 10.28 428798 40 42079 368894 10.24 410973 41 41527 361841 10.30 403368 42 40536 362210 10.06 402746 43 40328 360349 10.06 400677 44 39386 351363 10.08 390749 45 38420 341396 10.12 379816 46 38047 338001 10.12 376048 47 37690 343766 9.88 381456 48 36558 343018 9.63 379576 49 35414 323691 9.86 359105 50 35396 319125 9.98 354521 51 34169 312971 9.84 347140 52 34002 308444 9.93 342446 53 34017 302714 10.10 336731 54 33208 300263 9.96 333471 55 32141 292869 9.89 325010 56 32224 289663 10.01 321887 57 31246 290475 9.71 321721 58 30735 286846 9.68 317581 59 30510 279208 9.85 309718 60 30076 277728 9.77 307804 61 29690 273414 9.80 303104 62 30335 267988 10.17 298323 63 28732 269973 9.62 298705 64 28410 262377 9.77 290787 65 28082 251094 10.06 279176 66 26922 244774 9.91 271696 67 26646 239267 10.02 265913 68 26067 238608 9.85 264675 69 26318 236593 10.01 262911 70 25163 233889 9.71 259052 71 25134 230973 9.81 256107 72 24933 234116 9.62 259049 73 24461 224176 9.84 248637 74 24380 219569 9.99 243949 75 23671 219883 9.72 243554 76 23646 213797 9.96 237443 77 22951 208539 9.91 231490 78 22305 203373 9.88 225678 79 21965 201290 9.84 223255 80 22012 200722 9.88 222734 81 21131 193813 9.83 214944 82 21074 192858 9.85 213932 83 20570 190815 9.73 211385 84 20537 190201 9.75 210738 85 20246 181477 10.04 201723 86 19627 176891 9.99 196518 87 19277 171244 10.12 190521 88 19166 169169 10.18 188335 89 18916 167476 10.15 186392 90 18757 167115 10.09 185872 91 18648 171968 9.78 190616 92 17641 158233 10.03 175874 93 17638 158922 9.99 176560 94 17268 156532 9.94 173800 95 17220 153661 10.08 170881 96 16814 152180 9.95 168994 97 16384 152720 9.69 169104 98 16014 145356 9.92 161370 99 15947 149734 9.63 165681 100 15574 143600 9.78 159174 101 15591 138101 10.14 153692 102 15044 139219 9.75 154263 103 14850 136152 9.83 151002 104 14889 138561 9.70 153450 105 14416 130604 9.94 145020 106 14172 128737 9.92 142909 107 13965 123629 10.15 137594 108 14184 124918 10.20 139102 109 13745 136837 9.13 150582 110 13479 122510 9.91 135989 111 13363 120337 9.99 133700 112 13697 117559 10.44 131256 113 13685 124632 9.89 138317 114 13914 145307 8.74 159221 115 12165 110004 9.96 122169 116 12332 109882 10.09 122214 117 12050 105945 10.21 117995 118 11973 104699 10.26 116672 119 12173 103690 10.51 115863 120 12207 112458 9.79 124665 121 11682 100199 10.44 111881 122 11438 105134 9.81 116572 123 11953 128333 8.52 140286 124 10843 93230 10.42 104073 125 10486 90763 10.36 101249 126 10610 89790 10.57 100400 127 10091 88962 10.19 99053 128 10403 90645 10.30 101048 129 10049 92058 9.84 102107 130 9587 82272 10.44 91859 131 9500 82423 10.33 91923 132 9389 81903 10.28 91292 133 9260 79533 10.43 88793 134 8997 81206 9.97 90203 135 8930 76866 10.41 85796 136 8673 77189 10.10 85862 137 8858 77944 10.20 86802 138 8595 76127 10.14 84722 139 8313 73765 10.13 82078 140 7991 72407 9.94 80398 141 8151 75024 9.80 83175 142 7969 72476 9.91 80445 143 7625 67802 10.11 75427 144 7684 66383 10.37 74067 145 7418 65221 10.21 72639 146 7408 64315 10.33 71723 147 7289 64056 10.22 71345 148 7143 64042 10.03 71185 149 6869 61996 9.97 68865 150 6402 59737 9.68 66139 151 4781 48903 8.91 53684 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 217519 1950203 10.03 2167722 2 115540 506591 18.57 622131 3 83432 743494 10.09 826926 4 75301 669722 10.11 745023 5 30603 977714 3.04 1008317 6 29382 1266390 2.27 1295772 7 25966 686948 3.64 712914 8 26726 676473 3.80 703199 9 25525 640560 3.83 666085 10 26002 642772 3.89 668774 11 25876 623210 3.99 649086 12 22329 644062 3.35 666391 13 22002 620332 3.43 642334 14 20549 614394 3.24 634943 15 19832 634732 3.03 654564 16 19309 619403 3.02 638712 17 17668 594592 2.89 612260 18 16449 588958 2.72 605407 19 16098 581941 2.69 598039 20 15355 565209 2.64 580564 21 14746 558738 2.57 573484 22 14574 554611 2.56 569185 23 13427 548522 2.39 561949 24 13194 612985 2.11 626179 25 12556 527719 2.32 540275 26 11543 522901 2.16 534444 27 10993 522451 2.06 533444 28 10668 509338 2.05 520006 29 10010 502662 1.95 512672 30 9428 488411 1.89 497839 31 9230 489614 1.85 498844 32 9368 475787 1.93 485155 33 8503 480325 1.74 488828 34 8012 462304 1.70 470316 35 7775 454856 1.68 462631 36 7140 452992 1.55 460132 37 7503 456352 1.62 463855 38 6994 437619 1.57 444613 39 6570 454364 1.43 460934 40 5853 429761 1.34 435614 41 5612 421062 1.32 426674 42 5200 414127 1.24 419327 43 5174 405018 1.26 410192 44 4772 404006 1.17 408778 45 4613 401928 1.13 406541 46 4231 395302 1.06 399533 47 4026 382911 1.04 386937 48 3883 379932 1.01 383815 49 3622 374706 0.96 378328 50 3483 376425 0.92 379908 51 3360 367645 0.91 371005 52 3240 363510 0.88 366750 53 3145 353115 0.88 356260 54 2802 345252 0.81 348054 55 2718 347531 0.78 350249 56 2616 336558 0.77 339174 57 2502 340571 0.73 343073 58 2444 327867 0.74 330311 59 2319 320252 0.72 322571 60 2306 323154 0.71 325460 61 2224 315695 0.70 317919 62 2074 306600 0.67 308674 63 2018 298479 0.67 300497 64 2059 298178 0.69 300237 65 2173 299778 0.72 301951 66 1907 289965 0.65 291872 67 1748 280902 0.62 282650 68 1786 277614 0.64 279400 69 1794 271617 0.66 273411 70 1659 273062 0.60 274721 71 1723 266595 0.64 268318 72 1698 258316 0.65 260014 73 1668 255423 0.65 257091 74 1749 248443 0.70 250192 75 1748 247895 0.70 249643 76 1626 250142 0.65 251768 77 1588 238262 0.66 239850 78 1562 235383 0.66 236945 79 1509 227914 0.66 229423 80 1567 227410 0.68 228977 81 1533 220862 0.69 222395 82 1546 217542 0.71 219088 83 1468 213445 0.68 214913 84 1531 212552 0.72 214083 85 1472 208803 0.70 210275 86 1426 204814 0.69 206240 87 1360 208346 0.65 209706 88 1292 193999 0.66 195291 89 1341 192654 0.69 193995 90 1308 192264 0.68 193572 91 1367 189447 0.72 190814 92 1330 191025 0.69 192355 93 1381 203004 0.68 204385 94 1250 177266 0.70 178516 95 1145 170882 0.67 172027 96 1229 169517 0.72 170746 97 1186 164729 0.71 165915 98 1115 161731 0.68 162846 99 1123 160524 0.69 161647 100 1083 157718 0.68 158801 101 1153 156924 0.73 158077 102 1244 161077 0.77 162321 103 1079 151692 0.71 152771 104 1055 150685 0.70 151740 105 1247 147701 0.84 148948 106 1060 143934 0.73 144994 107 1030 143218 0.71 144248 108 1004 137594 0.72 138598 109 1019 136102 0.74 137121 110 1042 135310 0.76 136352 111 1013 130995 0.77 132008 112 1052 130468 0.80 131520 113 999 126908 0.78 127907 114 1033 127334 0.80 128367 115 971 124169 0.78 125140 116 975 121225 0.80 122200 117 973 120665 0.80 121638 118 1034 117784 0.87 118818 119 1198 121693 0.97 122891 120 967 116865 0.82 117832 121 979 113428 0.86 114407 122 867 109860 0.78 110727 123 912 108188 0.84 109100 124 903 106955 0.84 107858 125 863 104152 0.82 105015 126 880 103535 0.84 104415 127 889 100839 0.87 101728 128 818 98038 0.83 98856 129 840 96433 0.86 97273 130 848 96440 0.87 97288 131 846 92868 0.90 93714 132 860 92747 0.92 93607 133 806 91144 0.88 91950 134 790 90575 0.86 91365 135 932 88353 1.04 89285 136 917 88104 1.03 89021 137 833 84323 0.98 85156 138 797 83292 0.95 84089 139 1143 82975 1.36 84118 140 895 81101 1.09 81996 141 1107 81489 1.34 82596 142 1686 90378 1.83 92064 143 784 76996 1.01 77780 144 760 76072 0.99 76832 145 716 74215 0.96 74931 146 713 73199 0.96 73912 147 678 72469 0.93 73147 148 667 72240 0.91 72907 149 610 68554 0.88 69164 150 557 65929 0.84 66486 151 709 53275 1.31 53984 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 603316 1611786 27.24 2215102 2 579807 2338671 19.87 2918478 3 437754 2016636 17.84 2454390 4 419633 1806317 18.85 2225950 5 168126 2396849 6.55 2564975 6 155789 2618529 5.62 2774318 7 147819 3057999 4.61 3205818 8 149564 2840930 5.00 2990494 9 142449 2693656 5.02 2836105 10 136857 2616951 4.97 2753808 11 128874 2548018 4.81 2676892 12 119369 2560810 4.45 2680179 13 119139 2471388 4.60 2590527 14 109349 2411917 4.34 2521266 15 103724 2410710 4.13 2514434 16 104194 2362366 4.22 2466560 17 93213 2287352 3.92 2380565 18 88039 2257578 3.75 2345617 19 82488 2217079 3.59 2299567 20 78976 2190669 3.48 2269645 21 75595 2210568 3.31 2286163 22 76448 2145816 3.44 2222264 23 69152 2081356 3.22 2150508 24 66143 2064303 3.10 2130446 25 65017 2029167 3.10 2094184 26 58490 1999144 2.84 2057634 27 55020 1933003 2.77 1988023 28 54472 1928752 2.75 1983224 29 51907 1970117 2.57 2022024 30 48911 1864813 2.56 1913724 31 46368 1869048 2.42 1915416 32 46496 1825732 2.48 1872228 33 44851 1767142 2.48 1811993 34 41868 1742089 2.35 1783957 35 41157 1736975 2.31 1778132 36 38370 1803454 2.08 1841824 37 38452 1711238 2.20 1749690 38 34757 1676287 2.03 1711044 39 34486 1668327 2.03 1702813 40 31529 1634538 1.89 1666067 41 30446 1626763 1.84 1657209 42 28640 1652154 1.70 1680794 43 27802 1631323 1.68 1659125 44 26809 1614957 1.63 1641766 45 24809 1503057 1.62 1527866 46 24232 1509693 1.58 1533925 47 22974 1491623 1.52 1514597 48 21689 1481651 1.44 1503340 49 20932 1524960 1.35 1545892 50 19167 1423927 1.33 1443094 51 19358 1414317 1.35 1433675 52 18318 1376753 1.31 1395071 53 18077 1387440 1.29 1405517 54 15893 1359936 1.16 1375829 55 15207 1313920 1.14 1329127 56 14568 1310195 1.10 1324763 57 13888 1295181 1.06 1309069 58 13571 1288092 1.04 1301663 59 13267 1268184 1.04 1281451 60 12601 1269673 0.98 1282274 61 12084 1269789 0.94 1281873 62 12183 1271222 0.95 1283405 63 10906 1181038 0.91 1191944 64 10372 1169060 0.88 1179432 65 10243 1148627 0.88 1158870 66 9899 1141656 0.86 1151555 67 9585 1128509 0.84 1138094 68 9484 1106554 0.85 1116038 69 9617 1138316 0.84 1147933 70 9081 1076907 0.84 1085988 71 9133 1075198 0.84 1084331 72 9587 1077930 0.88 1087517 73 8998 1010769 0.88 1019767 74 8582 987132 0.86 995714 75 8170 974850 0.83 983020 76 7838 957287 0.81 965125 77 7854 934597 0.83 942451 78 7956 926293 0.85 934249 79 8160 955376 0.85 963536 80 7814 907536 0.85 915350 81 7832 898284 0.86 906116 82 7981 904591 0.87 912572 83 8385 908515 0.91 916900 84 8038 882267 0.90 890305 85 7637 830322 0.91 837959 86 7478 819372 0.90 826850 87 7217 802339 0.89 809556 88 6971 791946 0.87 798917 89 7274 783046 0.92 790320 90 7419 807461 0.91 814880 91 7326 780802 0.93 788128 92 7247 759754 0.94 767001 93 7297 768546 0.94 775843 94 7017 733521 0.95 740538 95 6911 716095 0.96 723006 96 6919 700205 0.98 707124 97 6390 680846 0.93 687236 98 6536 667703 0.97 674239 99 6704 674010 0.98 680714 100 6877 656680 1.04 663557 101 6277 645263 0.96 651540 102 6401 634384 1.00 640785 103 6319 614336 1.02 620655 104 6178 608734 1.00 614912 105 5902 598075 0.98 603977 106 5919 591217 0.99 597136 107 5973 591934 1.00 597907 108 5822 584880 0.99 590702 109 5866 560639 1.04 566505 110 5823 559456 1.03 565279 111 6282 595983 1.04 602265 112 5932 538027 1.09 543959 113 5844 524191 1.10 530035 114 5634 516264 1.08 521898 115 5532 506635 1.08 512167 116 5654 493494 1.13 499148 117 5815 486731 1.18 492546 118 5337 478659 1.10 483996 119 5627 472654 1.18 478281 120 5465 462063 1.17 467528 121 5197 452769 1.13 457966 122 5379 451861 1.18 457240 123 5176 447989 1.14 453165 124 5183 444342 1.15 449525 125 5544 464608 1.18 470152 126 4927 418021 1.16 422948 127 5103 410279 1.23 415382 128 4988 411813 1.20 416801 129 4977 406409 1.21 411386 130 5325 423048 1.24 428373 131 4935 394084 1.24 399019 132 4762 383267 1.23 388029 133 4926 375029 1.30 379955 134 4780 368710 1.28 373490 135 4736 361803 1.29 366539 136 4841 357453 1.34 362294 137 4871 355730 1.35 360601 138 4781 349829 1.35 354610 139 4912 354237 1.37 359149 140 5483 352709 1.53 358192 141 4849 331375 1.44 336224 142 5037 338514 1.47 343551 143 4765 328913 1.43 333678 144 4276 313836 1.34 318112 145 4251 309709 1.35 313960 146 4112 303777 1.34 307889 147 4451 310234 1.41 314685 148 3942 291516 1.33 295458 149 3995 284581 1.38 288576 150 3311 274079 1.19 277390 151 2897 217925 1.31 220822