File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
trimmed_ACR-140-TP2_S5_pe.bam	253975571	129549594	74033883	50391871	223	44252711	85296883	2128091197	36773667	324019082	7181221	379969323	35656246	1344491658
trimmed_ACR-145-TP2_S3_pe.bam	244866108	128317168	64999585	51549216	139	67184830	61132338	1643141123	24058487	252224414	5731243	289137573	27817483	1044171923
trimmed_ACR-150-TP2_S2_pe.bam	234083660	113214807	73776618	47092118	117	43160061	70054746	1735010006	30722845	264611417	6266562	311687978	31087883	1090633321
trimmed_ACR-173-TP2_S4_pe.bam	213856184	108437833	60420323	44997879	149	27834422	80603411	1974259511	31870842	307993633	6362507	356628244	31300370	1240103915
trimmed_ACR-178-TP2_S1_pe.bam	182967324	94962801	47926569	40077800	154	26986505	67976296	1620640931	27629121	253590325	5440088	295890257	26859971	1011231169