[M::ha_analyze_count] lowest: count[11] = 17163433 [M::ha_analyze_count] highest: count[34] = 45494864 [M::ha_hist_line] 2: ****************************************************** 24354332 [M::ha_hist_line] 3: ******************************************* 19729957 [M::ha_hist_line] 4: ******************************************* 19739525 [M::ha_hist_line] 5: ****************************************** 19224124 [M::ha_hist_line] 6: ***************************************** 18840299 [M::ha_hist_line] 7: **************************************** 18146542 [M::ha_hist_line] 8: *************************************** 17835056 [M::ha_hist_line] 9: ************************************** 17373216 [M::ha_hist_line] 10: ************************************** 17338622 [M::ha_hist_line] 11: ************************************** 17163433 [M::ha_hist_line] 12: ************************************** 17423424 [M::ha_hist_line] 13: *************************************** 17614076 [M::ha_hist_line] 14: **************************************** 18089023 [M::ha_hist_line] 15: ***************************************** 18566800 [M::ha_hist_line] 16: ****************************************** 19313379 [M::ha_hist_line] 17: ******************************************** 20123933 [M::ha_hist_line] 18: *********************************************** 21261093 [M::ha_hist_line] 19: ************************************************* 22456403 [M::ha_hist_line] 20: ***************************************************** 23909605 [M::ha_hist_line] 21: ******************************************************** 25385366 [M::ha_hist_line] 22: ************************************************************ 27215737 [M::ha_hist_line] 23: **************************************************************** 29038541 [M::ha_hist_line] 24: ******************************************************************** 31039294 [M::ha_hist_line] 25: ************************************************************************* 32989683 [M::ha_hist_line] 26: ****************************************************************************** 35292757 [M::ha_hist_line] 27: ********************************************************************************** 37368090 [M::ha_hist_line] 28: *************************************************************************************** 39449015 [M::ha_hist_line] 29: ******************************************************************************************* 41242251 [M::ha_hist_line] 30: ********************************************************************************************** 42787861 [M::ha_hist_line] 31: ************************************************************************************************* 44036979 [M::ha_hist_line] 32: *************************************************************************************************** 44998727 [M::ha_hist_line] 33: **************************************************************************************************** 45418510 [M::ha_hist_line] 34: **************************************************************************************************** 45494864 [M::ha_hist_line] 35: *************************************************************************************************** 45081757 [M::ha_hist_line] 36: ************************************************************************************************* 44174150 [M::ha_hist_line] 37: ********************************************************************************************** 42769648 [M::ha_hist_line] 38: ****************************************************************************************** 40959712 [M::ha_hist_line] 39: ************************************************************************************* 38714766 [M::ha_hist_line] 40: ******************************************************************************** 36255170 [M::ha_hist_line] 41: ************************************************************************** 33455334 [M::ha_hist_line] 42: ******************************************************************* 30620327 [M::ha_hist_line] 43: ************************************************************* 27700276 [M::ha_hist_line] 44: ******************************************************* 24954355 [M::ha_hist_line] 45: ************************************************* 22177826 [M::ha_hist_line] 46: ******************************************* 19531102 [M::ha_hist_line] 47: ************************************** 17085043 [M::ha_hist_line] 48: ********************************* 14932287 [M::ha_hist_line] 49: **************************** 12942563 [M::ha_hist_line] 50: ************************ 11137676 [M::ha_hist_line] 51: ********************* 9562638 [M::ha_hist_line] 52: ****************** 8233456 [M::ha_hist_line] 53: **************** 7057670 [M::ha_hist_line] 54: ************* 6132203 [M::ha_hist_line] 55: ************ 5295872 [M::ha_hist_line] 56: ********** 4647910 [M::ha_hist_line] 57: ********* 4114076 [M::ha_hist_line] 58: ******** 3688416 [M::ha_hist_line] 59: ******* 3332554 [M::ha_hist_line] 60: ******* 3064380 [M::ha_hist_line] 61: ****** 2814493 [M::ha_hist_line] 62: ****** 2651001 [M::ha_hist_line] 63: ***** 2498640 [M::ha_hist_line] 64: ***** 2364343 [M::ha_hist_line] 65: ***** 2264239 [M::ha_hist_line] 66: ***** 2166695 [M::ha_hist_line] 67: ***** 2082564 [M::ha_hist_line] 68: **** 2002206 [M::ha_hist_line] 69: **** 1908840 [M::ha_hist_line] 70: **** 1844956 [M::ha_hist_line] 71: **** 1774373 [M::ha_hist_line] 72: **** 1736835 [M::ha_hist_line] 73: **** 1661115 [M::ha_hist_line] 74: **** 1594950 [M::ha_hist_line] 75: *** 1539359 [M::ha_hist_line] 76: *** 1485800 [M::ha_hist_line] 77: *** 1410674 [M::ha_hist_line] 78: *** 1352248 [M::ha_hist_line] 79: *** 1297000 [M::ha_hist_line] 80: *** 1237905 [M::ha_hist_line] 81: *** 1186707 [M::ha_hist_line] 82: ** 1126320 [M::ha_hist_line] 83: ** 1066548 [M::ha_hist_line] 84: ** 1020723 [M::ha_hist_line] 85: ** 978818 [M::ha_hist_line] 86: ** 939784 [M::ha_hist_line] 87: ** 897440 [M::ha_hist_line] 88: ** 851835 [M::ha_hist_line] 89: ** 812903 [M::ha_hist_line] 90: ** 776335 [M::ha_hist_line] 91: ** 733159 [M::ha_hist_line] 92: ** 709452 [M::ha_hist_line] 93: * 681197 [M::ha_hist_line] 94: * 659729 [M::ha_hist_line] 95: * 631439 [M::ha_hist_line] 96: * 606010 [M::ha_hist_line] 97: * 584745 [M::ha_hist_line] 98: * 564776 [M::ha_hist_line] 99: * 546948 [M::ha_hist_line] 100: * 531380 [M::ha_hist_line] 101: * 508528 [M::ha_hist_line] 102: * 502047 [M::ha_hist_line] 103: * 482454 [M::ha_hist_line] 104: * 477354 [M::ha_hist_line] 105: * 463229 [M::ha_hist_line] 106: * 454193 [M::ha_hist_line] 107: * 441985 [M::ha_hist_line] 108: * 435793 [M::ha_hist_line] 109: * 424587 [M::ha_hist_line] 110: * 421305 [M::ha_hist_line] 111: * 413029 [M::ha_hist_line] 112: * 402853 [M::ha_hist_line] 113: * 391630 [M::ha_hist_line] 114: * 385770 [M::ha_hist_line] 115: * 377859 [M::ha_hist_line] 116: * 370386 [M::ha_hist_line] 117: * 362823 [M::ha_hist_line] 118: * 358196 [M::ha_hist_line] 119: * 345188 [M::ha_hist_line] 120: * 343011 [M::ha_hist_line] 121: * 334347 [M::ha_hist_line] 122: * 327077 [M::ha_hist_line] 123: * 322625 [M::ha_hist_line] 124: * 318344 [M::ha_hist_line] 125: * 311454 [M::ha_hist_line] 126: * 307034 [M::ha_hist_line] 127: * 302784 [M::ha_hist_line] 128: * 299613 [M::ha_hist_line] 129: * 290116 [M::ha_hist_line] 130: * 289320 [M::ha_hist_line] 131: * 280670 [M::ha_hist_line] 132: * 276063 [M::ha_hist_line] 133: * 272215 [M::ha_hist_line] 134: * 262630 [M::ha_hist_line] 135: * 258106 [M::ha_hist_line] 136: * 256607 [M::ha_hist_line] 137: * 248767 [M::ha_hist_line] 138: * 249948 [M::ha_hist_line] 139: * 248121 [M::ha_hist_line] 140: * 245277 [M::ha_hist_line] 141: * 240309 [M::ha_hist_line] 142: * 236591 [M::ha_hist_line] 143: * 232105 [M::ha_hist_line] rest: **************************************************************** 28907893 [M::ha_analyze_count] left: none [M::ha_analyze_count] right: none [M::ha_ft_gen] peak_hom: 34; peak_het: -1 [M::ha_ct_shrink::897.253*7.84] ==> counted 23972740 distinct minimizer k-mers [M::ha_ft_gen::902.514*7.80@33.480GB] ==> filtered out 23972740 k-mers occurring 170 or more times [M::ha_opt_update_cov] updated max_n_chain to 170 [M::yak_count] collected 569048505 minimizers [M::yak_count] collected 405691958 minimizers [M::yak_count] collected 658967671 minimizers [M::yak_count] collected 998873124 minimizers [M::ha_pt_gen::1502.556*8.66] ==> counted 102339310 distinct minimizer k-mers [M::ha_pt_gen] count[4095] = 0 (for sanity check) [M::ha_analyze_count] lowest: count[13] = 1089043 [M::ha_analyze_count] highest: count[33] = 2124731 [M::ha_hist_line] 1: ****************************************************************************************************> 22170441 [M::ha_hist_line] 2: ****************************************************************************************************> 2144999 [M::ha_hist_line] 3: *********************************************************************** 1516396 [M::ha_hist_line] 4: ******************************************************************* 1423653 [M::ha_hist_line] 5: **************************************************************** 1350407 [M::ha_hist_line] 6: ************************************************************* 1298595 [M::ha_hist_line] 7: ********************************************************** 1236806 [M::ha_hist_line] 8: ******************************************************** 1197815 [M::ha_hist_line] 9: ****************************************************** 1150741 [M::ha_hist_line] 10: ***************************************************** 1125422 [M::ha_hist_line] 11: **************************************************** 1098336 [M::ha_hist_line] 12: **************************************************** 1096280 [M::ha_hist_line] 13: *************************************************** 1089043 [M::ha_hist_line] 14: *************************************************** 1094189 [M::ha_hist_line] 15: **************************************************** 1106146 [M::ha_hist_line] 16: ***************************************************** 1127008 [M::ha_hist_line] 17: ****************************************************** 1154192 [M::ha_hist_line] 18: ******************************************************** 1197212 [M::ha_hist_line] 19: ********************************************************** 1242090 [M::ha_hist_line] 20: ************************************************************* 1299665 [M::ha_hist_line] 21: **************************************************************** 1355912 [M::ha_hist_line] 22: ******************************************************************* 1427854 [M::ha_hist_line] 23: *********************************************************************** 1500612 [M::ha_hist_line] 24: ************************************************************************** 1580257 [M::ha_hist_line] 25: ****************************************************************************** 1659641 [M::ha_hist_line] 26: *********************************************************************************** 1755920 [M::ha_hist_line] 27: ************************************************************************************** 1836174 [M::ha_hist_line] 28: ****************************************************************************************** 1915579 [M::ha_hist_line] 29: ********************************************************************************************* 1986032 [M::ha_hist_line] 30: ************************************************************************************************ 2043004 [M::ha_hist_line] 31: ************************************************************************************************** 2087561 [M::ha_hist_line] 32: **************************************************************************************************** 2119375 [M::ha_hist_line] 33: **************************************************************************************************** 2124731 [M::ha_hist_line] 34: **************************************************************************************************** 2119693 [M::ha_hist_line] 35: ************************************************************************************************** 2088864 [M::ha_hist_line] 36: ************************************************************************************************ 2040794 [M::ha_hist_line] 37: ******************************************************************************************** 1965023 [M::ha_hist_line] 38: **************************************************************************************** 1880383 [M::ha_hist_line] 39: *********************************************************************************** 1771382 [M::ha_hist_line] 40: ****************************************************************************** 1658351 [M::ha_hist_line] 41: ************************************************************************ 1531217 [M::ha_hist_line] 42: ****************************************************************** 1405545 [M::ha_hist_line] 43: ************************************************************ 1274942 [M::ha_hist_line] 44: ****************************************************** 1152305 [M::ha_hist_line] 45: ************************************************* 1030722 [M::ha_hist_line] 46: ******************************************* 914275 [M::ha_hist_line] 47: ************************************** 807927 [M::ha_hist_line] 48: ********************************** 716350 [M::ha_hist_line] 49: ****************************** 628326 [M::ha_hist_line] 50: ************************** 550264 [M::ha_hist_line] 51: *********************** 481563 [M::ha_hist_line] 52: ******************** 424871 [M::ha_hist_line] 53: ****************** 373569 [M::ha_hist_line] 54: **************** 333320 [M::ha_hist_line] 55: ************** 296663 [M::ha_hist_line] 56: ************* 269746 [M::ha_hist_line] 57: ************ 246442 [M::ha_hist_line] 58: *********** 227424 [M::ha_hist_line] 59: ********** 210700 [M::ha_hist_line] 60: ********* 198474 [M::ha_hist_line] 61: ********* 186806 [M::ha_hist_line] 62: ******** 179056 [M::ha_hist_line] 63: ******** 170805 [M::ha_hist_line] 64: ******** 164602 [M::ha_hist_line] 65: ******** 159468 [M::ha_hist_line] 66: ******* 154149 [M::ha_hist_line] 67: ******* 149766 [M::ha_hist_line] 68: ******* 144914 [M::ha_hist_line] 69: ******* 139507 [M::ha_hist_line] 70: ****** 135750 [M::ha_hist_line] 71: ****** 132270 [M::ha_hist_line] 72: ****** 128661 [M::ha_hist_line] 73: ****** 125156 [M::ha_hist_line] 74: ****** 120290 [M::ha_hist_line] 75: ***** 116767 [M::ha_hist_line] 76: ***** 114131 [M::ha_hist_line] 77: ***** 109019 [M::ha_hist_line] 78: ***** 106009 [M::ha_hist_line] 79: ***** 102296 [M::ha_hist_line] 80: ***** 98315 [M::ha_hist_line] 81: **** 95525 [M::ha_hist_line] 82: **** 91835 [M::ha_hist_line] 83: **** 87679 [M::ha_hist_line] 84: **** 85617 [M::ha_hist_line] 85: **** 82489 [M::ha_hist_line] 86: **** 80110 [M::ha_hist_line] 87: **** 77096 [M::ha_hist_line] 88: **** 74732 [M::ha_hist_line] 89: *** 71513 [M::ha_hist_line] 90: *** 69301 [M::ha_hist_line] 91: *** 67138 [M::ha_hist_line] 92: *** 65375 [M::ha_hist_line] 93: *** 64121 [M::ha_hist_line] 94: *** 61137 [M::ha_hist_line] 95: *** 59520 [M::ha_hist_line] 96: *** 57867 [M::ha_hist_line] 97: *** 56160 [M::ha_hist_line] 98: *** 54651 [M::ha_hist_line] 99: *** 53601 [M::ha_hist_line] 100: ** 51979 [M::ha_hist_line] 101: ** 50403 [M::ha_hist_line] 102: ** 50307 [M::ha_hist_line] 103: ** 48762 [M::ha_hist_line] 104: ** 47365 [M::ha_hist_line] 105: ** 46801 [M::ha_hist_line] 106: ** 45523 [M::ha_hist_line] 107: ** 44773 [M::ha_hist_line] 108: ** 44085 [M::ha_hist_line] 109: ** 42591 [M::ha_hist_line] 110: ** 42114 [M::ha_hist_line] 111: ** 41640 [M::ha_hist_line] 112: ** 40516 [M::ha_hist_line] 113: ** 39659 [M::ha_hist_line] 114: ** 38870 [M::ha_hist_line] 115: ** 37948 [M::ha_hist_line] 116: ** 37385 [M::ha_hist_line] 117: ** 36847 [M::ha_hist_line] 118: ** 35933 [M::ha_hist_line] 119: ** 35332 [M::ha_hist_line] 120: ** 35027 [M::ha_hist_line] 121: ** 33679 [M::ha_hist_line] 122: ** 33219 [M::ha_hist_line] 123: ** 32687 [M::ha_hist_line] 124: ** 31938 [M::ha_hist_line] 125: * 31390 [M::ha_hist_line] 126: * 31096 [M::ha_hist_line] 127: * 30434 [M::ha_hist_line] 128: * 29786 [M::ha_hist_line] 129: * 29340 [M::ha_hist_line] 130: * 28576 [M::ha_hist_line] 131: * 28012 [M::ha_hist_line] 132: * 27312 [M::ha_hist_line] 133: * 26685 [M::ha_hist_line] 134: * 26113 [M::ha_hist_line] 135: * 25559 [M::ha_hist_line] 136: * 24637 [M::ha_hist_line] 137: * 24641 [M::ha_hist_line] 138: * 24855 [M::ha_hist_line] 139: * 24000 [M::ha_hist_line] 140: * 24016 [M::ha_hist_line] 141: * 23207 [M::ha_hist_line] 142: * 22455 [M::ha_hist_line] 143: * 21719 [M::ha_hist_line] 144: * 21604 [M::ha_hist_line] 145: * 21354 [M::ha_hist_line] 146: * 21052 [M::ha_hist_line] 147: * 20953 [M::ha_hist_line] 148: * 19957 [M::ha_hist_line] 149: * 19965 [M::ha_hist_line] 150: * 19555 [M::ha_hist_line] 151: * 19218 [M::ha_hist_line] 152: * 18799 [M::ha_hist_line] 153: * 18027 [M::ha_hist_line] 154: * 17705 [M::ha_hist_line] 155: * 17515 [M::ha_hist_line] 156: * 17421 [M::ha_hist_line] 157: * 16856 [M::ha_hist_line] 158: * 16608 [M::ha_hist_line] 159: * 16635 [M::ha_hist_line] 160: * 15857 [M::ha_hist_line] 161: * 15896 [M::ha_hist_line] 162: * 15453 [M::ha_hist_line] 163: * 15110 [M::ha_hist_line] 164: * 15183 [M::ha_hist_line] 165: * 14620 [M::ha_hist_line] 166: * 14125 [M::ha_hist_line] 167: * 13257 [M::ha_hist_line] 168: * 11412 [M::ha_hist_line] rest: ******** 171530 [M::ha_analyze_count] left: none [M::ha_analyze_count] right: none [M::ha_pt_gen] peak_hom: 33; peak_het: -1 [M::ha_ct_shrink::1502.655*8.66] ==> counted 80168869 distinct minimizer k-mers [M::ha_pt_gen::] counting in normal mode [M::yak_count] collected 2632581258 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::ha_pt_gen::1726.252*10.66] ==> indexed 2610410817 positions, counted 80168869 distinct minimizer k-mers [M::pec::3811.029] # bases: 96205002879; # corrected bases: 101730803 [M::pec::19.666] # exact o: 603096053; # non-exact o: 73684355 [M::ha_assemble::5564.173*30.65@93.109GB] ==> corrected reads for round 1 [M::ha_assemble] # bases: 96205002879; # corrected bases: 101730803 [M::yak_count] collected 2626861005 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::ha_pt_gen::5744.443*30.62] ==> counted 82395077 distinct minimizer k-mers [M::ha_pt_gen] count[4095] = 0 (for sanity check) [M::ha_analyze_count] lowest: count[11] = 1076118 [M::ha_analyze_count] highest: count[33] = 2121184 [M::ha_hist_line] 1: ****************************************************************************************************> 3724025 [M::ha_hist_line] 2: ******************************************************* 1176796 [M::ha_hist_line] 3: ************************************************************* 1290468 [M::ha_hist_line] 4: ************************************************************** 1317434 [M::ha_hist_line] 5: ************************************************************ 1281675 [M::ha_hist_line] 6: *********************************************************** 1254154 [M::ha_hist_line] 7: ******************************************************** 1196588 [M::ha_hist_line] 8: ******************************************************* 1167340 [M::ha_hist_line] 9: ***************************************************** 1122015 [M::ha_hist_line] 10: **************************************************** 1101346 [M::ha_hist_line] 11: *************************************************** 1076118 [M::ha_hist_line] 12: *************************************************** 1077163 [M::ha_hist_line] 13: ************************************************** 1067079 [M::ha_hist_line] 14: *************************************************** 1076400 [M::ha_hist_line] 15: *************************************************** 1087824 [M::ha_hist_line] 16: **************************************************** 1109338 [M::ha_hist_line] 17: ***************************************************** 1134656 [M::ha_hist_line] 18: ******************************************************** 1179622 [M::ha_hist_line] 19: ********************************************************** 1221426 [M::ha_hist_line] 20: ************************************************************ 1279353 [M::ha_hist_line] 21: *************************************************************** 1335843 [M::ha_hist_line] 22: ****************************************************************** 1406135 [M::ha_hist_line] 23: ********************************************************************** 1481648 [M::ha_hist_line] 24: ************************************************************************** 1560325 [M::ha_hist_line] 25: ***************************************************************************** 1635468 [M::ha_hist_line] 26: ********************************************************************************** 1733022 [M::ha_hist_line] 27: ************************************************************************************** 1814531 [M::ha_hist_line] 28: ***************************************************************************************** 1898444 [M::ha_hist_line] 29: ********************************************************************************************* 1967379 [M::ha_hist_line] 30: ************************************************************************************************ 2027516 [M::ha_hist_line] 31: ************************************************************************************************** 2076956 [M::ha_hist_line] 32: *************************************************************************************************** 2109941 [M::ha_hist_line] 33: **************************************************************************************************** 2121184 [M::ha_hist_line] 34: **************************************************************************************************** 2119456 [M::ha_hist_line] 35: *************************************************************************************************** 2091140 [M::ha_hist_line] 36: ************************************************************************************************* 2051571 [M::ha_hist_line] 37: ********************************************************************************************* 1976013 [M::ha_hist_line] 38: ***************************************************************************************** 1896884 [M::ha_hist_line] 39: ************************************************************************************ 1791261 [M::ha_hist_line] 40: ******************************************************************************* 1681628 [M::ha_hist_line] 41: ************************************************************************* 1554472 [M::ha_hist_line] 42: ******************************************************************** 1432026 [M::ha_hist_line] 43: ************************************************************* 1297865 [M::ha_hist_line] 44: ******************************************************** 1178293 [M::ha_hist_line] 45: ************************************************** 1056086 [M::ha_hist_line] 46: ******************************************** 939664 [M::ha_hist_line] 47: *************************************** 828788 [M::ha_hist_line] 48: *********************************** 736211 [M::ha_hist_line] 49: ****************************** 645213 [M::ha_hist_line] 50: *************************** 568960 [M::ha_hist_line] 51: *********************** 495281 [M::ha_hist_line] 52: ********************* 437433 [M::ha_hist_line] 53: ****************** 383197 [M::ha_hist_line] 54: **************** 342965 [M::ha_hist_line] 55: ************** 303963 [M::ha_hist_line] 56: ************* 275442 [M::ha_hist_line] 57: ************ 251145 [M::ha_hist_line] 58: *********** 231666 [M::ha_hist_line] 59: ********** 213290 [M::ha_hist_line] 60: ********* 201170 [M::ha_hist_line] 61: ********* 189245 [M::ha_hist_line] 62: ********* 181366 [M::ha_hist_line] 63: ******** 172282 [M::ha_hist_line] 64: ******** 166645 [M::ha_hist_line] 65: ******** 160084 [M::ha_hist_line] 66: ******* 155877 [M::ha_hist_line] 67: ******* 150158 [M::ha_hist_line] 68: ******* 146301 [M::ha_hist_line] 69: ******* 140818 [M::ha_hist_line] 70: ****** 137272 [M::ha_hist_line] 71: ****** 132755 [M::ha_hist_line] 72: ****** 130368 [M::ha_hist_line] 73: ****** 125070 [M::ha_hist_line] 74: ****** 122210 [M::ha_hist_line] 75: ****** 117347 [M::ha_hist_line] 76: ***** 114919 [M::ha_hist_line] 77: ***** 109869 [M::ha_hist_line] 78: ***** 107285 [M::ha_hist_line] 79: ***** 103019 [M::ha_hist_line] 80: ***** 99477 [M::ha_hist_line] 81: ***** 96495 [M::ha_hist_line] 82: **** 93160 [M::ha_hist_line] 83: **** 89061 [M::ha_hist_line] 84: **** 86463 [M::ha_hist_line] 85: **** 83376 [M::ha_hist_line] 86: **** 81048 [M::ha_hist_line] 87: **** 78146 [M::ha_hist_line] 88: **** 75679 [M::ha_hist_line] 89: *** 72554 [M::ha_hist_line] 90: *** 70617 [M::ha_hist_line] 91: *** 67498 [M::ha_hist_line] 92: *** 66037 [M::ha_hist_line] 93: *** 64417 [M::ha_hist_line] 94: *** 62306 [M::ha_hist_line] 95: *** 59301 [M::ha_hist_line] 96: *** 58986 [M::ha_hist_line] 97: *** 56786 [M::ha_hist_line] 98: *** 55152 [M::ha_hist_line] 99: *** 54111 [M::ha_hist_line] 100: ** 52500 [M::ha_hist_line] 101: ** 51189 [M::ha_hist_line] 102: ** 49666 [M::ha_hist_line] 103: ** 49157 [M::ha_hist_line] 104: ** 48129 [M::ha_hist_line] 105: ** 47305 [M::ha_hist_line] 106: ** 46121 [M::ha_hist_line] 107: ** 44581 [M::ha_hist_line] 108: ** 44272 [M::ha_hist_line] 109: ** 43227 [M::ha_hist_line] 110: ** 42600 [M::ha_hist_line] 111: ** 41527 [M::ha_hist_line] 112: ** 40817 [M::ha_hist_line] 113: ** 39989 [M::ha_hist_line] 114: ** 39530 [M::ha_hist_line] 115: ** 38347 [M::ha_hist_line] 116: ** 37717 [M::ha_hist_line] 117: ** 36946 [M::ha_hist_line] 118: ** 36261 [M::ha_hist_line] 119: ** 35220 [M::ha_hist_line] 120: ** 35254 [M::ha_hist_line] 121: ** 34123 [M::ha_hist_line] 122: ** 33484 [M::ha_hist_line] 123: ** 32814 [M::ha_hist_line] 124: ** 32513 [M::ha_hist_line] 125: * 31467 [M::ha_hist_line] 126: * 31503 [M::ha_hist_line] 127: * 30803 [M::ha_hist_line] 128: * 29935 [M::ha_hist_line] 129: * 28967 [M::ha_hist_line] 130: * 28629 [M::ha_hist_line] 131: * 28449 [M::ha_hist_line] 132: * 28079 [M::ha_hist_line] 133: * 26963 [M::ha_hist_line] 134: * 26627 [M::ha_hist_line] 135: * 25751 [M::ha_hist_line] 136: * 25242 [M::ha_hist_line] 137: * 24585 [M::ha_hist_line] 138: * 24791 [M::ha_hist_line] 139: * 24338 [M::ha_hist_line] 140: * 24144 [M::ha_hist_line] 141: * 23589 [M::ha_hist_line] 142: * 22858 [M::ha_hist_line] 143: * 22296 [M::ha_hist_line] 144: * 21845 [M::ha_hist_line] 145: * 21676 [M::ha_hist_line] 146: * 21118 [M::ha_hist_line] 147: * 20945 [M::ha_hist_line] 148: * 20817 [M::ha_hist_line] 149: * 19913 [M::ha_hist_line] 150: * 19573 [M::ha_hist_line] 151: * 19299 [M::ha_hist_line] 152: * 19513 [M::ha_hist_line] 153: * 18688 [M::ha_hist_line] 154: * 18203 [M::ha_hist_line] 155: * 17537 [M::ha_hist_line] 156: * 17607 [M::ha_hist_line] 157: * 16841 [M::ha_hist_line] 158: * 16667 [M::ha_hist_line] 159: * 16622 [M::ha_hist_line] 160: * 16275 [M::ha_hist_line] 161: * 15801 [M::ha_hist_line] 162: * 15880 [M::ha_hist_line] 163: * 15300 [M::ha_hist_line] 164: * 15119 [M::ha_hist_line] 165: * 14804 [M::ha_hist_line] 166: * 14295 [M::ha_hist_line] 167: * 13661 [M::ha_hist_line] 168: * 12851 [M::ha_hist_line] 169: * 10873 [M::ha_hist_line] rest: ******** 177194 [M::ha_analyze_count] left: none [M::ha_analyze_count] right: none [M::ha_pt_gen] peak_hom: 33; peak_het: -1 [M::ha_ct_shrink::5744.518*30.62] ==> counted 78671052 distinct minimizer k-mers [M::ha_pt_gen::] counting in normal mode [M::yak_count] collected 2626861005 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::ha_pt_gen::5968.535*30.37] ==> indexed 2623136980 positions, counted 78671052 distinct minimizer k-mers [M::pec::3206.650] # bases: 96211628394; # corrected bases: 16153757 [M::pec::17.943] # exact o: 643725700; # non-exact o: 45198847 [M::ha_assemble::9197.465*33.61@96.150GB] ==> corrected reads for round 2 [M::ha_assemble] # bases: 96211628394; # corrected bases: 16153757 [M::yak_count] collected 2627054598 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::ha_pt_gen::9393.252*33.46] ==> counted 81347653 distinct minimizer k-mers [M::ha_pt_gen] count[4095] = 0 (for sanity check) [M::ha_analyze_count] lowest: count[11] = 1069933 [M::ha_analyze_count] highest: count[33] = 2122258 [M::ha_hist_line] 1: ****************************************************************************************************> 2877111 [M::ha_hist_line] 2: *************************************************** 1074760 [M::ha_hist_line] 3: *********************************************************** 1260266 [M::ha_hist_line] 4: ************************************************************* 1299162 [M::ha_hist_line] 5: ************************************************************ 1268957 [M::ha_hist_line] 6: *********************************************************** 1244508 [M::ha_hist_line] 7: ******************************************************** 1187474 [M::ha_hist_line] 8: ******************************************************* 1159393 [M::ha_hist_line] 9: ***************************************************** 1115972 [M::ha_hist_line] 10: **************************************************** 1096264 [M::ha_hist_line] 11: ************************************************** 1069933 [M::ha_hist_line] 12: *************************************************** 1073200 [M::ha_hist_line] 13: ************************************************** 1063570 [M::ha_hist_line] 14: *************************************************** 1073825 [M::ha_hist_line] 15: *************************************************** 1084357 [M::ha_hist_line] 16: **************************************************** 1105838 [M::ha_hist_line] 17: ***************************************************** 1132290 [M::ha_hist_line] 18: ******************************************************** 1178197 [M::ha_hist_line] 19: ********************************************************* 1219885 [M::ha_hist_line] 20: ************************************************************ 1277585 [M::ha_hist_line] 21: *************************************************************** 1333258 [M::ha_hist_line] 22: ****************************************************************** 1405221 [M::ha_hist_line] 23: ********************************************************************** 1480699 [M::ha_hist_line] 24: ************************************************************************* 1559122 [M::ha_hist_line] 25: ***************************************************************************** 1635597 [M::ha_hist_line] 26: ********************************************************************************** 1732932 [M::ha_hist_line] 27: ************************************************************************************* 1813697 [M::ha_hist_line] 28: ***************************************************************************************** 1898167 [M::ha_hist_line] 29: ********************************************************************************************* 1967507 [M::ha_hist_line] 30: ************************************************************************************************ 2028252 [M::ha_hist_line] 31: ************************************************************************************************** 2077476 [M::ha_hist_line] 32: *************************************************************************************************** 2111519 [M::ha_hist_line] 33: **************************************************************************************************** 2122258 [M::ha_hist_line] 34: **************************************************************************************************** 2120280 [M::ha_hist_line] 35: *************************************************************************************************** 2092044 [M::ha_hist_line] 36: ************************************************************************************************* 2052592 [M::ha_hist_line] 37: ********************************************************************************************* 1978854 [M::ha_hist_line] 38: ***************************************************************************************** 1897639 [M::ha_hist_line] 39: ************************************************************************************ 1793098 [M::ha_hist_line] 40: ******************************************************************************* 1682585 [M::ha_hist_line] 41: ************************************************************************* 1555799 [M::ha_hist_line] 42: ******************************************************************** 1433885 [M::ha_hist_line] 43: ************************************************************* 1299799 [M::ha_hist_line] 44: ******************************************************** 1179903 [M::ha_hist_line] 45: ************************************************** 1057774 [M::ha_hist_line] 46: ******************************************** 940910 [M::ha_hist_line] 47: *************************************** 829975 [M::ha_hist_line] 48: *********************************** 737471 [M::ha_hist_line] 49: ****************************** 645339 [M::ha_hist_line] 50: *************************** 569483 [M::ha_hist_line] 51: *********************** 495896 [M::ha_hist_line] 52: ********************* 437858 [M::ha_hist_line] 53: ****************** 384457 [M::ha_hist_line] 54: **************** 343244 [M::ha_hist_line] 55: ************** 303785 [M::ha_hist_line] 56: ************* 275256 [M::ha_hist_line] 57: ************ 251661 [M::ha_hist_line] 58: *********** 231512 [M::ha_hist_line] 59: ********** 213962 [M::ha_hist_line] 60: ********* 201243 [M::ha_hist_line] 61: ********* 189087 [M::ha_hist_line] 62: ********* 181531 [M::ha_hist_line] 63: ******** 172749 [M::ha_hist_line] 64: ******** 166485 [M::ha_hist_line] 65: ******** 160611 [M::ha_hist_line] 66: ******* 155795 [M::ha_hist_line] 67: ******* 150047 [M::ha_hist_line] 68: ******* 146792 [M::ha_hist_line] 69: ******* 140855 [M::ha_hist_line] 70: ****** 137141 [M::ha_hist_line] 71: ****** 132865 [M::ha_hist_line] 72: ****** 130191 [M::ha_hist_line] 73: ****** 125611 [M::ha_hist_line] 74: ****** 122220 [M::ha_hist_line] 75: ****** 117463 [M::ha_hist_line] 76: ***** 115199 [M::ha_hist_line] 77: ***** 109850 [M::ha_hist_line] 78: ***** 107718 [M::ha_hist_line] 79: ***** 102613 [M::ha_hist_line] 80: ***** 99321 [M::ha_hist_line] 81: ***** 96459 [M::ha_hist_line] 82: **** 93454 [M::ha_hist_line] 83: **** 89156 [M::ha_hist_line] 84: **** 86801 [M::ha_hist_line] 85: **** 83571 [M::ha_hist_line] 86: **** 81149 [M::ha_hist_line] 87: **** 77592 [M::ha_hist_line] 88: **** 76098 [M::ha_hist_line] 89: *** 72558 [M::ha_hist_line] 90: *** 70509 [M::ha_hist_line] 91: *** 67520 [M::ha_hist_line] 92: *** 65723 [M::ha_hist_line] 93: *** 64623 [M::ha_hist_line] 94: *** 62104 [M::ha_hist_line] 95: *** 59500 [M::ha_hist_line] 96: *** 58994 [M::ha_hist_line] 97: *** 56856 [M::ha_hist_line] 98: *** 55370 [M::ha_hist_line] 99: *** 54187 [M::ha_hist_line] 100: ** 52592 [M::ha_hist_line] 101: ** 51254 [M::ha_hist_line] 102: ** 49829 [M::ha_hist_line] 103: ** 49229 [M::ha_hist_line] 104: ** 48037 [M::ha_hist_line] 105: ** 47351 [M::ha_hist_line] 106: ** 46309 [M::ha_hist_line] 107: ** 44462 [M::ha_hist_line] 108: ** 44342 [M::ha_hist_line] 109: ** 43360 [M::ha_hist_line] 110: ** 42600 [M::ha_hist_line] 111: ** 41575 [M::ha_hist_line] 112: ** 40846 [M::ha_hist_line] 113: ** 40070 [M::ha_hist_line] 114: ** 39460 [M::ha_hist_line] 115: ** 38443 [M::ha_hist_line] 116: ** 37893 [M::ha_hist_line] 117: ** 36772 [M::ha_hist_line] 118: ** 36521 [M::ha_hist_line] 119: ** 35473 [M::ha_hist_line] 120: ** 35234 [M::ha_hist_line] 121: ** 33933 [M::ha_hist_line] 122: ** 33828 [M::ha_hist_line] 123: ** 33077 [M::ha_hist_line] 124: ** 32345 [M::ha_hist_line] 125: * 31438 [M::ha_hist_line] 126: * 31535 [M::ha_hist_line] 127: * 30678 [M::ha_hist_line] 128: * 30249 [M::ha_hist_line] 129: * 29152 [M::ha_hist_line] 130: * 28784 [M::ha_hist_line] 131: * 28358 [M::ha_hist_line] 132: * 28153 [M::ha_hist_line] 133: * 26973 [M::ha_hist_line] 134: * 26634 [M::ha_hist_line] 135: * 25999 [M::ha_hist_line] 136: * 25392 [M::ha_hist_line] 137: * 24868 [M::ha_hist_line] 138: * 24418 [M::ha_hist_line] 139: * 24342 [M::ha_hist_line] 140: * 24341 [M::ha_hist_line] 141: * 23458 [M::ha_hist_line] 142: * 22944 [M::ha_hist_line] 143: * 22037 [M::ha_hist_line] 144: * 22071 [M::ha_hist_line] 145: * 21613 [M::ha_hist_line] 146: * 21202 [M::ha_hist_line] 147: * 20994 [M::ha_hist_line] 148: * 20687 [M::ha_hist_line] 149: * 19867 [M::ha_hist_line] 150: * 19643 [M::ha_hist_line] 151: * 19389 [M::ha_hist_line] 152: * 19406 [M::ha_hist_line] 153: * 18708 [M::ha_hist_line] 154: * 17975 [M::ha_hist_line] 155: * 17716 [M::ha_hist_line] 156: * 17523 [M::ha_hist_line] 157: * 17051 [M::ha_hist_line] 158: * 16542 [M::ha_hist_line] 159: * 16567 [M::ha_hist_line] 160: * 16185 [M::ha_hist_line] 161: * 16063 [M::ha_hist_line] 162: * 15934 [M::ha_hist_line] 163: * 15381 [M::ha_hist_line] 164: * 15275 [M::ha_hist_line] 165: * 14858 [M::ha_hist_line] 166: * 14187 [M::ha_hist_line] 167: * 13769 [M::ha_hist_line] 168: * 12812 [M::ha_hist_line] 169: * 10969 [M::ha_hist_line] rest: ******** 179754 [M::ha_analyze_count] left: none [M::ha_analyze_count] right: none [M::ha_pt_gen] peak_hom: 33; peak_het: -1 [M::ha_ct_shrink::9393.351*33.46] ==> counted 78470542 distinct minimizer k-mers [M::ha_pt_gen::] counting in normal mode [M::yak_count] collected 2627054598 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::ha_pt_gen::9604.996*33.28] ==> indexed 2624177487 positions, counted 78470542 distinct minimizer k-mers [M::pec::3144.184] # bases: 96213966312; # corrected bases: 6540150 [M::pec::17.981] # exact o: 658952311; # non-exact o: 33784807 [M::ha_assemble::12767.708*34.85@111.486GB] ==> corrected reads for round 3 [M::ha_assemble] # bases: 96213966312; # corrected bases: 6540150 [M::yak_count] collected 2627158464 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::ha_pt_gen::12972.383*34.70] ==> counted 81067233 distinct minimizer k-mers [M::ha_pt_gen] count[4095] = 0 (for sanity check) [M::ha_analyze_count] lowest: count[11] = 1067658 [M::ha_analyze_count] highest: count[33] = 2123096 [M::ha_hist_line] 1: ****************************************************************************************************> 2675506 [M::ha_hist_line] 2: ************************************************* 1037652 [M::ha_hist_line] 3: *********************************************************** 1248040 [M::ha_hist_line] 4: ************************************************************* 1291025 [M::ha_hist_line] 5: ************************************************************ 1263830 [M::ha_hist_line] 6: ********************************************************** 1238986 [M::ha_hist_line] 7: ******************************************************** 1184841 [M::ha_hist_line] 8: ****************************************************** 1156578 [M::ha_hist_line] 9: **************************************************** 1113051 [M::ha_hist_line] 10: **************************************************** 1094035 [M::ha_hist_line] 11: ************************************************** 1067658 [M::ha_hist_line] 12: ************************************************** 1072109 [M::ha_hist_line] 13: ************************************************** 1062570 [M::ha_hist_line] 14: *************************************************** 1072447 [M::ha_hist_line] 15: *************************************************** 1083239 [M::ha_hist_line] 16: **************************************************** 1105509 [M::ha_hist_line] 17: ***************************************************** 1130896 [M::ha_hist_line] 18: ******************************************************* 1176804 [M::ha_hist_line] 19: ********************************************************* 1218946 [M::ha_hist_line] 20: ************************************************************ 1277604 [M::ha_hist_line] 21: *************************************************************** 1332612 [M::ha_hist_line] 22: ****************************************************************** 1404509 [M::ha_hist_line] 23: ********************************************************************** 1480428 [M::ha_hist_line] 24: ************************************************************************* 1558828 [M::ha_hist_line] 25: ***************************************************************************** 1635358 [M::ha_hist_line] 26: ********************************************************************************** 1733118 [M::ha_hist_line] 27: ************************************************************************************* 1814235 [M::ha_hist_line] 28: ***************************************************************************************** 1897628 [M::ha_hist_line] 29: ********************************************************************************************* 1967649 [M::ha_hist_line] 30: ************************************************************************************************ 2028291 [M::ha_hist_line] 31: ************************************************************************************************** 2077746 [M::ha_hist_line] 32: *************************************************************************************************** 2111687 [M::ha_hist_line] 33: **************************************************************************************************** 2123096 [M::ha_hist_line] 34: **************************************************************************************************** 2120577 [M::ha_hist_line] 35: *************************************************************************************************** 2092719 [M::ha_hist_line] 36: ************************************************************************************************* 2053167 [M::ha_hist_line] 37: ********************************************************************************************* 1979273 [M::ha_hist_line] 38: ***************************************************************************************** 1898103 [M::ha_hist_line] 39: ************************************************************************************ 1793883 [M::ha_hist_line] 40: ******************************************************************************* 1683464 [M::ha_hist_line] 41: ************************************************************************* 1556413 [M::ha_hist_line] 42: ******************************************************************** 1434123 [M::ha_hist_line] 43: ************************************************************* 1300420 [M::ha_hist_line] 44: ******************************************************** 1179750 [M::ha_hist_line] 45: ************************************************** 1057960 [M::ha_hist_line] 46: ******************************************** 941411 [M::ha_hist_line] 47: *************************************** 830273 [M::ha_hist_line] 48: *********************************** 737920 [M::ha_hist_line] 49: ****************************** 645699 [M::ha_hist_line] 50: *************************** 569665 [M::ha_hist_line] 51: *********************** 495714 [M::ha_hist_line] 52: ********************* 438292 [M::ha_hist_line] 53: ****************** 384269 [M::ha_hist_line] 54: **************** 343581 [M::ha_hist_line] 55: ************** 304126 [M::ha_hist_line] 56: ************* 275272 [M::ha_hist_line] 57: ************ 251541 [M::ha_hist_line] 58: *********** 231620 [M::ha_hist_line] 59: ********** 213822 [M::ha_hist_line] 60: ********* 201379 [M::ha_hist_line] 61: ********* 189012 [M::ha_hist_line] 62: ********* 181767 [M::ha_hist_line] 63: ******** 172721 [M::ha_hist_line] 64: ******** 166495 [M::ha_hist_line] 65: ******** 160592 [M::ha_hist_line] 66: ******* 156132 [M::ha_hist_line] 67: ******* 150305 [M::ha_hist_line] 68: ******* 146654 [M::ha_hist_line] 69: ******* 140876 [M::ha_hist_line] 70: ****** 137184 [M::ha_hist_line] 71: ****** 132824 [M::ha_hist_line] 72: ****** 130367 [M::ha_hist_line] 73: ****** 125498 [M::ha_hist_line] 74: ****** 122443 [M::ha_hist_line] 75: ****** 117496 [M::ha_hist_line] 76: ***** 114930 [M::ha_hist_line] 77: ***** 110016 [M::ha_hist_line] 78: ***** 107926 [M::ha_hist_line] 79: ***** 102341 [M::ha_hist_line] 80: ***** 99639 [M::ha_hist_line] 81: ***** 96581 [M::ha_hist_line] 82: **** 93206 [M::ha_hist_line] 83: **** 89180 [M::ha_hist_line] 84: **** 87003 [M::ha_hist_line] 85: **** 83598 [M::ha_hist_line] 86: **** 81080 [M::ha_hist_line] 87: **** 77767 [M::ha_hist_line] 88: **** 75926 [M::ha_hist_line] 89: *** 72707 [M::ha_hist_line] 90: *** 70521 [M::ha_hist_line] 91: *** 67415 [M::ha_hist_line] 92: *** 65929 [M::ha_hist_line] 93: *** 64346 [M::ha_hist_line] 94: *** 62077 [M::ha_hist_line] 95: *** 59569 [M::ha_hist_line] 96: *** 59111 [M::ha_hist_line] 97: *** 56994 [M::ha_hist_line] 98: *** 55364 [M::ha_hist_line] 99: *** 53991 [M::ha_hist_line] 100: ** 52764 [M::ha_hist_line] 101: ** 51150 [M::ha_hist_line] 102: ** 49894 [M::ha_hist_line] 103: ** 49271 [M::ha_hist_line] 104: ** 48111 [M::ha_hist_line] 105: ** 47367 [M::ha_hist_line] 106: ** 46338 [M::ha_hist_line] 107: ** 44491 [M::ha_hist_line] 108: ** 44332 [M::ha_hist_line] 109: ** 43444 [M::ha_hist_line] 110: ** 42629 [M::ha_hist_line] 111: ** 41452 [M::ha_hist_line] 112: ** 40928 [M::ha_hist_line] 113: ** 40140 [M::ha_hist_line] 114: ** 39266 [M::ha_hist_line] 115: ** 38481 [M::ha_hist_line] 116: ** 38045 [M::ha_hist_line] 117: ** 36886 [M::ha_hist_line] 118: ** 36331 [M::ha_hist_line] 119: ** 35396 [M::ha_hist_line] 120: ** 35399 [M::ha_hist_line] 121: ** 33915 [M::ha_hist_line] 122: ** 33863 [M::ha_hist_line] 123: ** 33144 [M::ha_hist_line] 124: ** 32384 [M::ha_hist_line] 125: * 31435 [M::ha_hist_line] 126: * 31552 [M::ha_hist_line] 127: * 30709 [M::ha_hist_line] 128: * 30165 [M::ha_hist_line] 129: * 29179 [M::ha_hist_line] 130: * 28783 [M::ha_hist_line] 131: * 28453 [M::ha_hist_line] 132: * 28102 [M::ha_hist_line] 133: * 26857 [M::ha_hist_line] 134: * 26682 [M::ha_hist_line] 135: * 26008 [M::ha_hist_line] 136: * 25442 [M::ha_hist_line] 137: * 24844 [M::ha_hist_line] 138: * 24587 [M::ha_hist_line] 139: * 24315 [M::ha_hist_line] 140: * 24232 [M::ha_hist_line] 141: * 23577 [M::ha_hist_line] 142: * 22810 [M::ha_hist_line] 143: * 22201 [M::ha_hist_line] 144: * 22099 [M::ha_hist_line] 145: * 21594 [M::ha_hist_line] 146: * 21303 [M::ha_hist_line] 147: * 21046 [M::ha_hist_line] 148: * 20639 [M::ha_hist_line] 149: * 19842 [M::ha_hist_line] 150: * 19580 [M::ha_hist_line] 151: * 19503 [M::ha_hist_line] 152: * 19370 [M::ha_hist_line] 153: * 18760 [M::ha_hist_line] 154: * 17961 [M::ha_hist_line] 155: * 17742 [M::ha_hist_line] 156: * 17478 [M::ha_hist_line] 157: * 17049 [M::ha_hist_line] 158: * 16556 [M::ha_hist_line] 159: * 16621 [M::ha_hist_line] 160: * 16165 [M::ha_hist_line] 161: * 16099 [M::ha_hist_line] 162: * 15932 [M::ha_hist_line] 163: * 15386 [M::ha_hist_line] 164: * 15257 [M::ha_hist_line] 165: * 14886 [M::ha_hist_line] 166: * 14221 [M::ha_hist_line] 167: * 13802 [M::ha_hist_line] 168: * 12840 [M::ha_hist_line] 169: * 10923 [M::ha_hist_line] rest: ********* 180695 [M::ha_analyze_count] left: none [M::ha_analyze_count] right: none [M::ha_pt_gen] peak_hom: 33; peak_het: -1 [M::ha_ct_shrink::12972.540*34.70] ==> counted 78391727 distinct minimizer k-mers [M::ha_pt_gen::] counting in normal mode [M::yak_count] collected 2627158464 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::ha_pt_gen::13192.314*34.52] ==> indexed 2624482958 positions, counted 78391727 distinct minimizer k-mers [M::ha_print_ovlp_stat_0] # overlaps: 693653279 [M::ha_print_ovlp_stat_0] # strong overlaps: 398321500 [M::ha_print_ovlp_stat_0] # weak overlaps: 295331779 [M::ha_print_ovlp_stat_0] # exact overlaps: 658427838 [M::ha_print_ovlp_stat_0] # inexact overlaps: 35225441 [M::ha_print_ovlp_stat_0] # overlaps without large indels: 684673229 [M::ha_print_ovlp_stat_0] # reverse overlaps: 454052341 [M::ha_print_ovlp_stat_0] # running time: 931.183 [M::ha_assemble::14128.144*34.85@124.909GB] ==> found overlaps for the final round [M::ha_opt_update_cov_min] updated max_n_chain to 165 Writing reads to disk... Reads has been written. Writing ma_hit_ts to disk... ma_hit_ts has been written. Writing ma_hit_ts to disk... ma_hit_ts has been written. bin files have been written. [M::purge_dups] homozygous read coverage threshold: 32 [M::purge_dups] purge duplication coverage threshold: 41 [M::ug_ext_gfa::] # tips::15485 Writing raw unitig GFA to disk... [M::ug_ext_gfa::] # tips::32 Writing processed unitig GFA to disk... [M::purge_dups] homozygous read coverage threshold: 32 [M::purge_dups] purge duplication coverage threshold: 41 [M::mc_solve:: # edges: 142298] [M::mc_solve_core_adv::17.968] ==> Partition ERROR-purge [M::adjust_utg_by_primary] primary contig coverage range: [27, infinity] Writing pb-hifiasm-siscowet-assembly.asm.bp.p_ctg.gfa to disk... [M::reduce_hamming_error_adv::2.933] # inserted edges: 94594, # fixed bubbles: 2033 [M::adjust_utg_by_trio] primary contig coverage range: [27, infinity] [M::recall_arcs] # transitive arcs::6906 [M::recall_arcs] # new arcs::1250616, # old arcs::857914 [M::clean_trio_untig_graph] # adjusted arcs::8 [M::adjust_utg_by_trio] primary contig coverage range: [27, infinity] [M::recall_arcs] # transitive arcs::9302 [M::recall_arcs] # new arcs::1273714, # old arcs::881244 ERROR ERROR ERROR [M::clean_trio_untig_graph] # adjusted arcs::28 [M::output_trio_graph_joint] dedup_base::248656582, miss_base::0 Writing pb-hifiasm-siscowet-assembly.asm.bp.hap1.p_ctg.gfa to disk... Writing pb-hifiasm-siscowet-assembly.asm.bp.hap2.p_ctg.gfa to disk... Inconsistency threshold for low-quality regions in BED files: 70% [M::main] Version: 0.25.0-r726 [M::main] CMD: /srlab/programs/miniforge3-24.7.1-0/envs/hifiasm-0.25.0_env/bin/hifiasm -o pb-hifiasm-siscowet-assembly.asm -t 40 /mmfs1/gscratch/scrubbed/samwhite/gitrepos/RobertsLab/project-lake-trout/data/pacbio-siscowet/m84082_250614_081210_s3.hifi_reads.demux.bc2071--bc2071.fastq.gz /mmfs1/gscratch/scrubbed/samwhite/gitrepos/RobertsLab/project-lake-trout/data/pacbio-siscowet/m84082_250614_081210_s3.hifi_reads.demux.bc2072--bc2072.fastq.gz /mmfs1/gscratch/scrubbed/samwhite/gitrepos/RobertsLab/project-lake-trout/data/pacbio-siscowet/m84082_250614_101514_s4.hifi_reads.demux.bc2073--bc2073.fastq.gz /mmfs1/gscratch/scrubbed/samwhite/gitrepos/RobertsLab/project-lake-trout/data/pacbio-siscowet/m84082_251001_025627_s2.hifi_reads.bc2096.fastq.gz [M::main] Real time: 17047.395 sec; CPU: 495594.964 sec; Peak RSS: 125.075 GB