[M::ha_analyze_count] lowest: count[7] = 27383048 [M::ha_analyze_count] highest: count[22] = 59402468 [M::ha_hist_line] 2: ********************************************************** 34252076 [M::ha_hist_line] 3: **************************************************** 30767560 [M::ha_hist_line] 4: ************************************************** 29751568 [M::ha_hist_line] 5: ************************************************ 28405015 [M::ha_hist_line] 6: *********************************************** 27993222 [M::ha_hist_line] 7: ********************************************** 27383048 [M::ha_hist_line] 8: *********************************************** 27742749 [M::ha_hist_line] 9: *********************************************** 28098909 [M::ha_hist_line] 10: ************************************************* 29238260 [M::ha_hist_line] 11: **************************************************** 30876412 [M::ha_hist_line] 12: ******************************************************** 33166485 [M::ha_hist_line] 13: ************************************************************ 35352200 [M::ha_hist_line] 14: ***************************************************************** 38432984 [M::ha_hist_line] 15: ********************************************************************** 41508994 [M::ha_hist_line] 16: **************************************************************************** 45032508 [M::ha_hist_line] 17: ********************************************************************************** 48480420 [M::ha_hist_line] 18: *************************************************************************************** 51973160 [M::ha_hist_line] 19: ******************************************************************************************** 54725584 [M::ha_hist_line] 20: ************************************************************************************************ 57277245 [M::ha_hist_line] 21: *************************************************************************************************** 58589373 [M::ha_hist_line] 22: **************************************************************************************************** 59402468 [M::ha_hist_line] 23: **************************************************************************************************** 59238345 [M::ha_hist_line] 24: ************************************************************************************************** 58269080 [M::ha_hist_line] 25: ********************************************************************************************** 56101286 [M::ha_hist_line] 26: ****************************************************************************************** 53313461 [M::ha_hist_line] 27: ************************************************************************************ 49633340 [M::ha_hist_line] 28: ***************************************************************************** 45760685 [M::ha_hist_line] 29: ********************************************************************* 41033195 [M::ha_hist_line] 30: ************************************************************* 36494887 [M::ha_hist_line] 31: ****************************************************** 32015440 [M::ha_hist_line] 32: *********************************************** 27700118 [M::ha_hist_line] 33: **************************************** 23689827 [M::ha_hist_line] 34: ********************************** 20069937 [M::ha_hist_line] 35: **************************** 16921805 [M::ha_hist_line] 36: ************************ 14109052 [M::ha_hist_line] 37: ******************** 11657245 [M::ha_hist_line] 38: **************** 9791529 [M::ha_hist_line] 39: ************** 8206727 [M::ha_hist_line] 40: ************ 6898193 [M::ha_hist_line] 41: ********** 5814360 [M::ha_hist_line] 42: ******** 5025425 [M::ha_hist_line] 43: ******* 4388300 [M::ha_hist_line] 44: ******* 3926815 [M::ha_hist_line] 45: ****** 3493750 [M::ha_hist_line] 46: ***** 3188738 [M::ha_hist_line] 47: ***** 2927406 [M::ha_hist_line] 48: ***** 2759119 [M::ha_hist_line] 49: **** 2566609 [M::ha_hist_line] 50: **** 2419202 [M::ha_hist_line] 51: **** 2252834 [M::ha_hist_line] 52: **** 2124972 [M::ha_hist_line] 53: *** 1991192 [M::ha_hist_line] 54: *** 1900977 [M::ha_hist_line] 55: *** 1775424 [M::ha_hist_line] 56: *** 1663012 [M::ha_hist_line] 57: *** 1560988 [M::ha_hist_line] 58: ** 1477716 [M::ha_hist_line] 59: ** 1387038 [M::ha_hist_line] 60: ** 1306086 [M::ha_hist_line] 61: ** 1217877 [M::ha_hist_line] 62: ** 1161102 [M::ha_hist_line] 63: ** 1100263 [M::ha_hist_line] 64: ** 1025055 [M::ha_hist_line] 65: ** 971233 [M::ha_hist_line] 66: ** 926317 [M::ha_hist_line] 67: * 874087 [M::ha_hist_line] 68: * 838412 [M::ha_hist_line] 69: * 799216 [M::ha_hist_line] 70: * 763298 [M::ha_hist_line] 71: * 732462 [M::ha_hist_line] 72: * 705197 [M::ha_hist_line] 73: * 669676 [M::ha_hist_line] 74: * 640579 [M::ha_hist_line] 75: * 625004 [M::ha_hist_line] 76: * 606818 [M::ha_hist_line] 77: * 583498 [M::ha_hist_line] 78: * 571663 [M::ha_hist_line] 79: * 547981 [M::ha_hist_line] 80: * 531023 [M::ha_hist_line] 81: * 515184 [M::ha_hist_line] 82: * 503160 [M::ha_hist_line] 83: * 489726 [M::ha_hist_line] 84: * 479112 [M::ha_hist_line] 85: * 462965 [M::ha_hist_line] 86: * 450329 [M::ha_hist_line] 87: * 441459 [M::ha_hist_line] 88: * 427249 [M::ha_hist_line] 89: * 422180 [M::ha_hist_line] 90: * 412487 [M::ha_hist_line] 91: * 398922 [M::ha_hist_line] 92: * 390367 [M::ha_hist_line] 93: * 379644 [M::ha_hist_line] 94: * 366569 [M::ha_hist_line] 95: * 360393 [M::ha_hist_line] 96: * 350762 [M::ha_hist_line] 97: * 345305 [M::ha_hist_line] 98: * 340034 [M::ha_hist_line] 99: * 326574 [M::ha_hist_line] 100: * 320249 [M::ha_hist_line] 101: * 312876 [M::ha_hist_line] 102: * 302614 [M::ha_hist_line] rest: *********************************************** 27782928 [M::ha_analyze_count] left: none [M::ha_analyze_count] right: none [M::ha_ft_gen] peak_hom: 22; peak_het: -1 [M::ha_ct_shrink::638.637*8.26] ==> counted 25826515 distinct minimizer k-mers [M::ha_ft_gen::644.200*8.19@33.333GB] ==> filtered out 25826515 k-mers occurring 110 or more times [M::ha_opt_update_cov] updated max_n_chain to 110 [M::yak_count] collected 655018746 minimizers [M::yak_count] collected 255004312 minimizers [M::yak_count] collected 517167673 minimizers [M::yak_count] collected 384605888 minimizers [M::ha_pt_gen::1061.109*9.11] ==> counted 96670621 distinct minimizer k-mers [M::ha_pt_gen] count[4095] = 0 (for sanity check) [M::ha_analyze_count] lowest: count[9] = 1721842 [M::ha_analyze_count] highest: count[22] = 2822836 [M::ha_hist_line] 1: ****************************************************************************************************> 16888988 [M::ha_hist_line] 2: *********************************************************************************************** 2683593 [M::ha_hist_line] 3: ****************************************************************************** 2200741 [M::ha_hist_line] 4: ************************************************************************* 2057900 [M::ha_hist_line] 5: ******************************************************************** 1924541 [M::ha_hist_line] 6: ***************************************************************** 1848536 [M::ha_hist_line] 7: *************************************************************** 1770244 [M::ha_hist_line] 8: ************************************************************** 1746496 [M::ha_hist_line] 9: ************************************************************* 1721842 [M::ha_hist_line] 10: ************************************************************** 1741955 [M::ha_hist_line] 11: *************************************************************** 1787520 [M::ha_hist_line] 12: ****************************************************************** 1864404 [M::ha_hist_line] 13: ********************************************************************* 1942847 [M::ha_hist_line] 14: ************************************************************************* 2055774 [M::ha_hist_line] 15: ***************************************************************************** 2173324 [M::ha_hist_line] 16: ********************************************************************************** 2311137 [M::ha_hist_line] 17: ************************************************************************************** 2441418 [M::ha_hist_line] 18: ******************************************************************************************* 2573810 [M::ha_hist_line] 19: *********************************************************************************************** 2676330 [M::ha_hist_line] 20: ************************************************************************************************** 2769001 [M::ha_hist_line] 21: *************************************************************************************************** 2804792 [M::ha_hist_line] 22: **************************************************************************************************** 2822836 [M::ha_hist_line] 23: *************************************************************************************************** 2793355 [M::ha_hist_line] 24: ************************************************************************************************* 2732957 [M::ha_hist_line] 25: ********************************************************************************************* 2618927 [M::ha_hist_line] 26: **************************************************************************************** 2478781 [M::ha_hist_line] 27: ********************************************************************************** 2306194 [M::ha_hist_line] 28: *************************************************************************** 2125410 [M::ha_hist_line] 29: ******************************************************************** 1912348 [M::ha_hist_line] 30: ************************************************************* 1709338 [M::ha_hist_line] 31: ***************************************************** 1504842 [M::ha_hist_line] 32: *********************************************** 1314049 [M::ha_hist_line] 33: **************************************** 1137767 [M::ha_hist_line] 34: *********************************** 980069 [M::ha_hist_line] 35: ****************************** 837528 [M::ha_hist_line] 36: ************************* 715389 [M::ha_hist_line] 37: ********************** 610257 [M::ha_hist_line] 38: ******************* 524209 [M::ha_hist_line] 39: **************** 455864 [M::ha_hist_line] 40: ************** 397927 [M::ha_hist_line] 41: ************ 351493 [M::ha_hist_line] 42: *********** 314790 [M::ha_hist_line] 43: ********** 284598 [M::ha_hist_line] 44: ********* 262506 [M::ha_hist_line] 45: ********* 241208 [M::ha_hist_line] 46: ******** 226851 [M::ha_hist_line] 47: ******** 212594 [M::ha_hist_line] 48: ******* 204248 [M::ha_hist_line] 49: ******* 192857 [M::ha_hist_line] 50: ******* 185052 [M::ha_hist_line] 51: ****** 174148 [M::ha_hist_line] 52: ****** 166601 [M::ha_hist_line] 53: ****** 157865 [M::ha_hist_line] 54: ***** 152519 [M::ha_hist_line] 55: ***** 144303 [M::ha_hist_line] 56: ***** 138145 [M::ha_hist_line] 57: ***** 130873 [M::ha_hist_line] 58: **** 125999 [M::ha_hist_line] 59: **** 120266 [M::ha_hist_line] 60: **** 114243 [M::ha_hist_line] 61: **** 109363 [M::ha_hist_line] 62: **** 103915 [M::ha_hist_line] 63: **** 100305 [M::ha_hist_line] 64: *** 95470 [M::ha_hist_line] 65: *** 91029 [M::ha_hist_line] 66: *** 88023 [M::ha_hist_line] 67: *** 84344 [M::ha_hist_line] 68: *** 81531 [M::ha_hist_line] 69: *** 77974 [M::ha_hist_line] 70: *** 75977 [M::ha_hist_line] 71: *** 72628 [M::ha_hist_line] 72: *** 70810 [M::ha_hist_line] 73: ** 67830 [M::ha_hist_line] 74: ** 65444 [M::ha_hist_line] 75: ** 63733 [M::ha_hist_line] 76: ** 62448 [M::ha_hist_line] 77: ** 59871 [M::ha_hist_line] 78: ** 58176 [M::ha_hist_line] 79: ** 56498 [M::ha_hist_line] 80: ** 54343 [M::ha_hist_line] 81: ** 53170 [M::ha_hist_line] 82: ** 51558 [M::ha_hist_line] 83: ** 50429 [M::ha_hist_line] 84: ** 49133 [M::ha_hist_line] 85: ** 47230 [M::ha_hist_line] 86: ** 46404 [M::ha_hist_line] 87: ** 44686 [M::ha_hist_line] 88: ** 43727 [M::ha_hist_line] 89: ** 42800 [M::ha_hist_line] 90: * 41652 [M::ha_hist_line] 91: * 39994 [M::ha_hist_line] 92: * 39190 [M::ha_hist_line] 93: * 37960 [M::ha_hist_line] 94: * 36605 [M::ha_hist_line] 95: * 35553 [M::ha_hist_line] 96: * 34913 [M::ha_hist_line] 97: * 33691 [M::ha_hist_line] 98: * 33058 [M::ha_hist_line] 99: * 31817 [M::ha_hist_line] 100: * 30759 [M::ha_hist_line] 101: * 30305 [M::ha_hist_line] 102: * 29068 [M::ha_hist_line] 103: * 28596 [M::ha_hist_line] 104: * 27614 [M::ha_hist_line] 105: * 27015 [M::ha_hist_line] 106: * 25544 [M::ha_hist_line] 107: * 24834 [M::ha_hist_line] 108: * 22010 [M::ha_hist_line] 109: * 17643 [M::ha_hist_line] rest: ******* 209552 [M::ha_analyze_count] left: none [M::ha_analyze_count] right: none [M::ha_pt_gen] peak_hom: 22; peak_het: -1 [M::ha_ct_shrink::1061.178*9.12] ==> counted 79781633 distinct minimizer k-mers [M::ha_pt_gen::] counting in normal mode [M::yak_count] collected 1811796619 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::ha_pt_gen::1226.413*11.13] ==> indexed 1794907631 positions, counted 79781633 distinct minimizer k-mers [M::pec::1914.518] # bases: 66649431823; # corrected bases: 69991032 [M::pec::10.241] # exact o: 298352222; # non-exact o: 39963123 [M::ha_assemble::3155.242*28.56@57.304GB] ==> corrected reads for round 1 [M::ha_assemble] # bases: 66649431823; # corrected bases: 69991032 [M::yak_count] collected 1807565523 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::ha_pt_gen::3299.767*28.47] ==> counted 82769120 distinct minimizer k-mers [M::ha_pt_gen] count[4095] = 0 (for sanity check) [M::ha_analyze_count] lowest: count[9] = 1689916 [M::ha_analyze_count] highest: count[22] = 2816333 [M::ha_hist_line] 1: ****************************************************************************************************> 4173526 [M::ha_hist_line] 2: ****************************************************************** 1864672 [M::ha_hist_line] 3: ************************************************************************ 2024304 [M::ha_hist_line] 4: ********************************************************************** 1966911 [M::ha_hist_line] 5: ****************************************************************** 1863859 [M::ha_hist_line] 6: **************************************************************** 1802708 [M::ha_hist_line] 7: ************************************************************* 1730409 [M::ha_hist_line] 8: ************************************************************* 1713922 [M::ha_hist_line] 9: ************************************************************ 1689916 [M::ha_hist_line] 10: ************************************************************* 1711988 [M::ha_hist_line] 11: ************************************************************** 1754945 [M::ha_hist_line] 12: ***************************************************************** 1836373 [M::ha_hist_line] 13: ******************************************************************** 1912083 [M::ha_hist_line] 14: ************************************************************************ 2027359 [M::ha_hist_line] 15: **************************************************************************** 2145602 [M::ha_hist_line] 16: ********************************************************************************* 2282576 [M::ha_hist_line] 17: ************************************************************************************** 2415607 [M::ha_hist_line] 18: ****************************************************************************************** 2548707 [M::ha_hist_line] 19: ********************************************************************************************** 2652890 [M::ha_hist_line] 20: ************************************************************************************************** 2754081 [M::ha_hist_line] 21: *************************************************************************************************** 2793203 [M::ha_hist_line] 22: **************************************************************************************************** 2816333 [M::ha_hist_line] 23: *************************************************************************************************** 2793673 [M::ha_hist_line] 24: ************************************************************************************************* 2740549 [M::ha_hist_line] 25: ********************************************************************************************* 2629226 [M::ha_hist_line] 26: ***************************************************************************************** 2498152 [M::ha_hist_line] 27: *********************************************************************************** 2330651 [M::ha_hist_line] 28: **************************************************************************** 2152931 [M::ha_hist_line] 29: ********************************************************************* 1939300 [M::ha_hist_line] 30: ************************************************************** 1739280 [M::ha_hist_line] 31: ****************************************************** 1532853 [M::ha_hist_line] 32: ************************************************ 1340009 [M::ha_hist_line] 33: ***************************************** 1164766 [M::ha_hist_line] 34: ************************************ 1002586 [M::ha_hist_line] 35: ****************************** 858096 [M::ha_hist_line] 36: ************************** 733371 [M::ha_hist_line] 37: ********************** 624455 [M::ha_hist_line] 38: ******************* 538564 [M::ha_hist_line] 39: ***************** 465298 [M::ha_hist_line] 40: ************** 407682 [M::ha_hist_line] 41: ************* 357603 [M::ha_hist_line] 42: *********** 320561 [M::ha_hist_line] 43: ********** 289126 [M::ha_hist_line] 44: ********* 266623 [M::ha_hist_line] 45: ********* 244406 [M::ha_hist_line] 46: ******** 229217 [M::ha_hist_line] 47: ******** 214291 [M::ha_hist_line] 48: ******* 206180 [M::ha_hist_line] 49: ******* 194971 [M::ha_hist_line] 50: ******* 185712 [M::ha_hist_line] 51: ****** 175461 [M::ha_hist_line] 52: ****** 167294 [M::ha_hist_line] 53: ****** 160105 [M::ha_hist_line] 54: ***** 153560 [M::ha_hist_line] 55: ***** 146377 [M::ha_hist_line] 56: ***** 139208 [M::ha_hist_line] 57: ***** 132262 [M::ha_hist_line] 58: ***** 127273 [M::ha_hist_line] 59: **** 120700 [M::ha_hist_line] 60: **** 115759 [M::ha_hist_line] 61: **** 109190 [M::ha_hist_line] 62: **** 104915 [M::ha_hist_line] 63: **** 101362 [M::ha_hist_line] 64: *** 97055 [M::ha_hist_line] 65: *** 92064 [M::ha_hist_line] 66: *** 88872 [M::ha_hist_line] 67: *** 84557 [M::ha_hist_line] 68: *** 82183 [M::ha_hist_line] 69: *** 78757 [M::ha_hist_line] 70: *** 76714 [M::ha_hist_line] 71: *** 73596 [M::ha_hist_line] 72: *** 71500 [M::ha_hist_line] 73: ** 68257 [M::ha_hist_line] 74: ** 65915 [M::ha_hist_line] 75: ** 64119 [M::ha_hist_line] 76: ** 62689 [M::ha_hist_line] 77: ** 60584 [M::ha_hist_line] 78: ** 59016 [M::ha_hist_line] 79: ** 56252 [M::ha_hist_line] 80: ** 55067 [M::ha_hist_line] 81: ** 53396 [M::ha_hist_line] 82: ** 51843 [M::ha_hist_line] 83: ** 51052 [M::ha_hist_line] 84: ** 49671 [M::ha_hist_line] 85: ** 47909 [M::ha_hist_line] 86: ** 46496 [M::ha_hist_line] 87: ** 44806 [M::ha_hist_line] 88: ** 43729 [M::ha_hist_line] 89: ** 43068 [M::ha_hist_line] 90: ** 42487 [M::ha_hist_line] 91: * 40934 [M::ha_hist_line] 92: * 39724 [M::ha_hist_line] 93: * 38141 [M::ha_hist_line] 94: * 37117 [M::ha_hist_line] 95: * 35517 [M::ha_hist_line] 96: * 35272 [M::ha_hist_line] 97: * 34185 [M::ha_hist_line] 98: * 32984 [M::ha_hist_line] 99: * 32258 [M::ha_hist_line] 100: * 31507 [M::ha_hist_line] 101: * 30208 [M::ha_hist_line] 102: * 29692 [M::ha_hist_line] 103: * 28485 [M::ha_hist_line] 104: * 27944 [M::ha_hist_line] 105: * 26878 [M::ha_hist_line] 106: * 26037 [M::ha_hist_line] 107: * 24767 [M::ha_hist_line] 108: * 23484 [M::ha_hist_line] 109: * 19745 [M::ha_hist_line] rest: ******** 227015 [M::ha_analyze_count] left: none [M::ha_analyze_count] right: none [M::ha_pt_gen] peak_hom: 22; peak_het: -1 [M::ha_ct_shrink::3315.622*28.34] ==> counted 78595594 distinct minimizer k-mers [M::ha_pt_gen::] counting in normal mode [M::yak_count] collected 1807565523 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::ha_pt_gen::3475.237*28.17] ==> indexed 1803391997 positions, counted 78595594 distinct minimizer k-mers [M::pec::1623.389] # bases: 66655724157; # corrected bases: 12546129 [M::pec::9.424] # exact o: 319092318; # non-exact o: 25826905 [M::ha_assemble::5110.968*31.82@66.175GB] ==> corrected reads for round 2 [M::ha_assemble] # bases: 66655724157; # corrected bases: 12546129 [M::yak_count] collected 1807622221 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::ha_pt_gen::5258.269*31.65] ==> counted 81869844 distinct minimizer k-mers [M::ha_pt_gen] count[4095] = 0 (for sanity check) [M::ha_analyze_count] lowest: count[9] = 1683364 [M::ha_analyze_count] highest: count[22] = 2818041 [M::ha_hist_line] 1: ****************************************************************************************************> 3479527 [M::ha_hist_line] 2: ************************************************************** 1742242 [M::ha_hist_line] 3: *********************************************************************** 1991690 [M::ha_hist_line] 4: ********************************************************************* 1946798 [M::ha_hist_line] 5: ****************************************************************** 1848069 [M::ha_hist_line] 6: **************************************************************** 1791997 [M::ha_hist_line] 7: ************************************************************* 1721638 [M::ha_hist_line] 8: ************************************************************* 1706729 [M::ha_hist_line] 9: ************************************************************ 1683364 [M::ha_hist_line] 10: ************************************************************* 1707702 [M::ha_hist_line] 11: ************************************************************** 1751757 [M::ha_hist_line] 12: ***************************************************************** 1831602 [M::ha_hist_line] 13: ******************************************************************** 1908980 [M::ha_hist_line] 14: ************************************************************************ 2025402 [M::ha_hist_line] 15: **************************************************************************** 2144222 [M::ha_hist_line] 16: ********************************************************************************* 2281708 [M::ha_hist_line] 17: ************************************************************************************** 2414019 [M::ha_hist_line] 18: ****************************************************************************************** 2549600 [M::ha_hist_line] 19: ********************************************************************************************** 2653376 [M::ha_hist_line] 20: ************************************************************************************************** 2754134 [M::ha_hist_line] 21: *************************************************************************************************** 2794850 [M::ha_hist_line] 22: **************************************************************************************************** 2818041 [M::ha_hist_line] 23: *************************************************************************************************** 2794027 [M::ha_hist_line] 24: ************************************************************************************************* 2742373 [M::ha_hist_line] 25: ********************************************************************************************* 2631758 [M::ha_hist_line] 26: ***************************************************************************************** 2500665 [M::ha_hist_line] 27: *********************************************************************************** 2332583 [M::ha_hist_line] 28: **************************************************************************** 2155794 [M::ha_hist_line] 29: ********************************************************************* 1940769 [M::ha_hist_line] 30: ************************************************************** 1741056 [M::ha_hist_line] 31: ****************************************************** 1535151 [M::ha_hist_line] 32: ************************************************ 1340822 [M::ha_hist_line] 33: ***************************************** 1166118 [M::ha_hist_line] 34: ************************************ 1003263 [M::ha_hist_line] 35: ******************************* 859578 [M::ha_hist_line] 36: ************************** 734210 [M::ha_hist_line] 37: ********************** 624544 [M::ha_hist_line] 38: ******************* 539635 [M::ha_hist_line] 39: ***************** 465751 [M::ha_hist_line] 40: ************** 407602 [M::ha_hist_line] 41: ************* 357962 [M::ha_hist_line] 42: *********** 320835 [M::ha_hist_line] 43: ********** 289541 [M::ha_hist_line] 44: ********* 266631 [M::ha_hist_line] 45: ********* 244007 [M::ha_hist_line] 46: ******** 229440 [M::ha_hist_line] 47: ******** 214420 [M::ha_hist_line] 48: ******* 206960 [M::ha_hist_line] 49: ******* 195376 [M::ha_hist_line] 50: ******* 185834 [M::ha_hist_line] 51: ****** 175617 [M::ha_hist_line] 52: ****** 167621 [M::ha_hist_line] 53: ****** 159787 [M::ha_hist_line] 54: ***** 153977 [M::ha_hist_line] 55: ***** 146396 [M::ha_hist_line] 56: ***** 139430 [M::ha_hist_line] 57: ***** 132524 [M::ha_hist_line] 58: ***** 127752 [M::ha_hist_line] 59: **** 120747 [M::ha_hist_line] 60: **** 116475 [M::ha_hist_line] 61: **** 109367 [M::ha_hist_line] 62: **** 105073 [M::ha_hist_line] 63: **** 101596 [M::ha_hist_line] 64: *** 97174 [M::ha_hist_line] 65: *** 92035 [M::ha_hist_line] 66: *** 89136 [M::ha_hist_line] 67: *** 84703 [M::ha_hist_line] 68: *** 82252 [M::ha_hist_line] 69: *** 78976 [M::ha_hist_line] 70: *** 76333 [M::ha_hist_line] 71: *** 73700 [M::ha_hist_line] 72: *** 71493 [M::ha_hist_line] 73: ** 68184 [M::ha_hist_line] 74: ** 66064 [M::ha_hist_line] 75: ** 64438 [M::ha_hist_line] 76: ** 63010 [M::ha_hist_line] 77: ** 60511 [M::ha_hist_line] 78: ** 59020 [M::ha_hist_line] 79: ** 56377 [M::ha_hist_line] 80: ** 55406 [M::ha_hist_line] 81: ** 53491 [M::ha_hist_line] 82: ** 51813 [M::ha_hist_line] 83: ** 51060 [M::ha_hist_line] 84: ** 49587 [M::ha_hist_line] 85: ** 48011 [M::ha_hist_line] 86: ** 46763 [M::ha_hist_line] 87: ** 44864 [M::ha_hist_line] 88: ** 44197 [M::ha_hist_line] 89: ** 42951 [M::ha_hist_line] 90: ** 42597 [M::ha_hist_line] 91: * 40778 [M::ha_hist_line] 92: * 39928 [M::ha_hist_line] 93: * 38211 [M::ha_hist_line] 94: * 36957 [M::ha_hist_line] 95: * 35619 [M::ha_hist_line] 96: * 35120 [M::ha_hist_line] 97: * 34020 [M::ha_hist_line] 98: * 33153 [M::ha_hist_line] 99: * 32557 [M::ha_hist_line] 100: * 31713 [M::ha_hist_line] 101: * 30304 [M::ha_hist_line] 102: * 29422 [M::ha_hist_line] 103: * 28700 [M::ha_hist_line] 104: * 27675 [M::ha_hist_line] 105: * 26929 [M::ha_hist_line] 106: * 26014 [M::ha_hist_line] 107: * 24736 [M::ha_hist_line] 108: * 23495 [M::ha_hist_line] 109: * 19733 [M::ha_hist_line] rest: ******** 230120 [M::ha_analyze_count] left: none [M::ha_analyze_count] right: none [M::ha_pt_gen] peak_hom: 22; peak_het: -1 [M::ha_ct_shrink::5258.367*31.65] ==> counted 78390317 distinct minimizer k-mers [M::ha_pt_gen::] counting in normal mode [M::yak_count] collected 1807622221 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::ha_pt_gen::5417.710*31.45] ==> indexed 1804142694 positions, counted 78390317 distinct minimizer k-mers [M::pec::1595.548] # bases: 66657717563; # corrected bases: 5034556 [M::pec::9.385] # exact o: 327090970; # non-exact o: 19935862 [M::ha_assemble::7022.947*33.32@74.701GB] ==> corrected reads for round 3 [M::ha_assemble] # bases: 66657717563; # corrected bases: 5034556 [M::yak_count] collected 1807635661 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::ha_pt_gen::7172.036*33.15] ==> counted 81615456 distinct minimizer k-mers [M::ha_pt_gen] count[4095] = 0 (for sanity check) [M::ha_analyze_count] lowest: count[9] = 1680887 [M::ha_analyze_count] highest: count[22] = 2818494 [M::ha_hist_line] 1: ****************************************************************************************************> 3300764 [M::ha_hist_line] 2: ************************************************************ 1701376 [M::ha_hist_line] 3: ********************************************************************** 1978237 [M::ha_hist_line] 4: ********************************************************************* 1938603 [M::ha_hist_line] 5: ***************************************************************** 1842262 [M::ha_hist_line] 6: *************************************************************** 1787415 [M::ha_hist_line] 7: ************************************************************* 1718087 [M::ha_hist_line] 8: ************************************************************ 1704403 [M::ha_hist_line] 9: ************************************************************ 1680887 [M::ha_hist_line] 10: ************************************************************* 1705969 [M::ha_hist_line] 11: ************************************************************** 1750065 [M::ha_hist_line] 12: ***************************************************************** 1830852 [M::ha_hist_line] 13: ******************************************************************** 1907550 [M::ha_hist_line] 14: ************************************************************************ 2024512 [M::ha_hist_line] 15: **************************************************************************** 2143421 [M::ha_hist_line] 16: ********************************************************************************* 2281550 [M::ha_hist_line] 17: ************************************************************************************** 2413403 [M::ha_hist_line] 18: ****************************************************************************************** 2550009 [M::ha_hist_line] 19: ********************************************************************************************** 2653107 [M::ha_hist_line] 20: ************************************************************************************************** 2754631 [M::ha_hist_line] 21: *************************************************************************************************** 2795187 [M::ha_hist_line] 22: **************************************************************************************************** 2818494 [M::ha_hist_line] 23: *************************************************************************************************** 2795459 [M::ha_hist_line] 24: ************************************************************************************************* 2742421 [M::ha_hist_line] 25: ********************************************************************************************* 2632680 [M::ha_hist_line] 26: ***************************************************************************************** 2501441 [M::ha_hist_line] 27: *********************************************************************************** 2333724 [M::ha_hist_line] 28: **************************************************************************** 2156011 [M::ha_hist_line] 29: ********************************************************************* 1941146 [M::ha_hist_line] 30: ************************************************************** 1741637 [M::ha_hist_line] 31: ****************************************************** 1535956 [M::ha_hist_line] 32: ************************************************ 1341419 [M::ha_hist_line] 33: ***************************************** 1166814 [M::ha_hist_line] 34: ************************************ 1003742 [M::ha_hist_line] 35: ******************************* 859740 [M::ha_hist_line] 36: ************************** 734576 [M::ha_hist_line] 37: ********************** 624839 [M::ha_hist_line] 38: ******************* 539774 [M::ha_hist_line] 39: ***************** 465748 [M::ha_hist_line] 40: ************** 407667 [M::ha_hist_line] 41: ************* 358086 [M::ha_hist_line] 42: *********** 321101 [M::ha_hist_line] 43: ********** 289573 [M::ha_hist_line] 44: ********* 266640 [M::ha_hist_line] 45: ********* 243860 [M::ha_hist_line] 46: ******** 229738 [M::ha_hist_line] 47: ******** 214570 [M::ha_hist_line] 48: ******* 206932 [M::ha_hist_line] 49: ******* 195490 [M::ha_hist_line] 50: ******* 186020 [M::ha_hist_line] 51: ****** 175570 [M::ha_hist_line] 52: ****** 167720 [M::ha_hist_line] 53: ****** 159740 [M::ha_hist_line] 54: ***** 153916 [M::ha_hist_line] 55: ***** 146517 [M::ha_hist_line] 56: ***** 139661 [M::ha_hist_line] 57: ***** 132508 [M::ha_hist_line] 58: ***** 127473 [M::ha_hist_line] 59: **** 120818 [M::ha_hist_line] 60: **** 116428 [M::ha_hist_line] 61: **** 109442 [M::ha_hist_line] 62: **** 105094 [M::ha_hist_line] 63: **** 101778 [M::ha_hist_line] 64: *** 97075 [M::ha_hist_line] 65: *** 92337 [M::ha_hist_line] 66: *** 88891 [M::ha_hist_line] 67: *** 84786 [M::ha_hist_line] 68: *** 82269 [M::ha_hist_line] 69: *** 78969 [M::ha_hist_line] 70: *** 76419 [M::ha_hist_line] 71: *** 73613 [M::ha_hist_line] 72: *** 71433 [M::ha_hist_line] 73: ** 68489 [M::ha_hist_line] 74: ** 66101 [M::ha_hist_line] 75: ** 64325 [M::ha_hist_line] 76: ** 62832 [M::ha_hist_line] 77: ** 60657 [M::ha_hist_line] 78: ** 59101 [M::ha_hist_line] 79: ** 56379 [M::ha_hist_line] 80: ** 55395 [M::ha_hist_line] 81: ** 53596 [M::ha_hist_line] 82: ** 51771 [M::ha_hist_line] 83: ** 51236 [M::ha_hist_line] 84: ** 49460 [M::ha_hist_line] 85: ** 48144 [M::ha_hist_line] 86: ** 46790 [M::ha_hist_line] 87: ** 44768 [M::ha_hist_line] 88: ** 44214 [M::ha_hist_line] 89: ** 43099 [M::ha_hist_line] 90: ** 42645 [M::ha_hist_line] 91: * 40786 [M::ha_hist_line] 92: * 39798 [M::ha_hist_line] 93: * 38211 [M::ha_hist_line] 94: * 37053 [M::ha_hist_line] 95: * 35621 [M::ha_hist_line] 96: * 35079 [M::ha_hist_line] 97: * 33945 [M::ha_hist_line] 98: * 33345 [M::ha_hist_line] 99: * 32484 [M::ha_hist_line] 100: * 31732 [M::ha_hist_line] 101: * 30360 [M::ha_hist_line] 102: * 29502 [M::ha_hist_line] 103: * 28676 [M::ha_hist_line] 104: * 27656 [M::ha_hist_line] 105: * 27091 [M::ha_hist_line] 106: * 25808 [M::ha_hist_line] 107: * 24724 [M::ha_hist_line] 108: * 23552 [M::ha_hist_line] 109: * 19814 [M::ha_hist_line] rest: ******** 231172 [M::ha_analyze_count] left: none [M::ha_analyze_count] right: none [M::ha_pt_gen] peak_hom: 22; peak_het: -1 [M::ha_ct_shrink::7172.124*33.15] ==> counted 78314692 distinct minimizer k-mers [M::ha_pt_gen::] counting in normal mode [M::yak_count] collected 1807635661 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::yak_count] collected 0 minimizers [M::ha_pt_gen::7322.964*33.01] ==> indexed 1804334897 positions, counted 78314692 distinct minimizer k-mers [M::ha_print_ovlp_stat_0] # overlaps: 347488770 [M::ha_print_ovlp_stat_0] # strong overlaps: 188077363 [M::ha_print_ovlp_stat_0] # weak overlaps: 159411407 [M::ha_print_ovlp_stat_0] # exact overlaps: 326779481 [M::ha_print_ovlp_stat_0] # inexact overlaps: 20709289 [M::ha_print_ovlp_stat_0] # overlaps without large indels: 342625125 [M::ha_print_ovlp_stat_0] # reverse overlaps: 229565342 [M::ha_print_ovlp_stat_0] # running time: 499.395 [M::ha_assemble::7824.710*33.42@77.674GB] ==> found overlaps for the final round [M::ha_opt_update_cov_min] updated max_n_chain to 110 Writing reads to disk... Reads has been written. Writing ma_hit_ts to disk... ma_hit_ts has been written. Writing ma_hit_ts to disk... ma_hit_ts has been written. bin files have been written. [M::purge_dups] homozygous read coverage threshold: 21 [M::purge_dups] purge duplication coverage threshold: 27 ERROR6 [M::ug_ext_gfa::] # tips::21085 Writing raw unitig GFA to disk... [M::ug_ext_gfa::] # tips::52 ERROR6 Writing processed unitig GFA to disk... ERROR6 [M::purge_dups] homozygous read coverage threshold: 21 [M::purge_dups] purge duplication coverage threshold: 27 [M::mc_solve:: # edges: 130996] [M::mc_solve_core_adv::18.096] ==> Partition ERROR-purge [M::adjust_utg_by_primary] primary contig coverage range: [17, infinity] Writing pb-hifiasm-lean-assembly.asm.bp.p_ctg.gfa to disk... [M::reduce_hamming_error_adv::2.365] # inserted edges: 61528, # fixed bubbles: 1978 [M::adjust_utg_by_trio] primary contig coverage range: [17, infinity] [M::recall_arcs] # transitive arcs::5746 [M::recall_arcs] # new arcs::1035848, # old arcs::702638 [M::clean_trio_untig_graph] # adjusted arcs::2 [M::adjust_utg_by_trio] primary contig coverage range: [17, infinity] [M::recall_arcs] # transitive arcs::7778 [M::recall_arcs] # new arcs::1052212, # old arcs::721450 [M::clean_trio_untig_graph] # adjusted arcs::6 [M::output_trio_graph_joint] dedup_base::300358143, miss_base::0 Writing pb-hifiasm-lean-assembly.asm.bp.hap1.p_ctg.gfa to disk... Writing pb-hifiasm-lean-assembly.asm.bp.hap2.p_ctg.gfa to disk... Inconsistency threshold for low-quality regions in BED files: 70% [M::main] Version: 0.25.0-r726 [M::main] CMD: /srlab/programs/miniforge3-24.7.1-0/envs/hifiasm-0.25.0_env/bin/hifiasm -o pb-hifiasm-lean-assembly.asm -t 40 /mmfs1/gscratch/scrubbed/samwhite/gitrepos/RobertsLab/project-lake-trout/data/pacbio-lean/m84082_250614_081210_s3.hifi_reads.demux.bc2041--bc2041.fastq.gz /mmfs1/gscratch/scrubbed/samwhite/gitrepos/RobertsLab/project-lake-trout/data/pacbio-lean/m84082_250614_101514_s4.hifi_reads.demux.bc2069--bc2069.fastq.gz /mmfs1/gscratch/scrubbed/samwhite/gitrepos/RobertsLab/project-lake-trout/data/pacbio-lean/m84082_250614_101514_s4.hifi_reads.demux.bc2070--bc2070.fastq.gz /mmfs1/gscratch/scrubbed/samwhite/gitrepos/RobertsLab/project-lake-trout/data/pacbio-lean/m84082_251001_025627_s2.hifi_reads.bc2068.fastq.gz [M::main] Real time: 9403.068 sec; CPU: 263324.173 sec; Peak RSS: 80.975 GB