[samfaipath] build FASTA index...
[M::mm_idx_gen::46.955*1.22] collected minimizers
[M::mm_idx_gen::50.202*2.45] sorted minimizers
[M::main::50.210*2.45] loaded/built the index for 110158 target sequence(s)
[M::mm_mapopt_update::51.911*2.40] mid_occ = 500
[M::mm_idx_stat] kmer size: 19; skip: 19; is_hpc: 0; #seq: 110158
[M::mm_idx_stat::53.582*2.36] distinct minimizers: 113233233 (64.33% are singletons); average occurrences: 3.903; average spacing: 9.812; total length: 4336778941
[M::worker_pipeline::701.775*85.35] mapped 230661 sequences
[M::main] Version: 2.24-r1155-dirty
[M::main] CMD: flye-minimap2 -x map-hifi -t 100 -a -p 0.5 -N 10 --sam-hit-only -L -K 5G -z 1000 -Q --secondary-seq -I 64G /mmfs1/gscratch/scrubbed/samwhite/gitrepos/RobertsLab/project-lake-trout/output/13.1-genome-assembly-siscowet/40-polishing/filtered_contigs.fasta /mmfs1/gscratch/scrubbed/samwhite/gitrepos/RobertsLab/project-lake-trout/output/13.1-genome-assembly-siscowet/30-contigger/graph_final.fasta
[M::main] Real time: 702.968 sec; CPU: 59895.009 sec; Peak RSS: 97.940 GB
[bam_sort_core] merging from 0 files and 4 in-memory blocks...