[samfaipath] build FASTA index...
[M::mm_idx_gen::76.462*1.37] collected minimizers
[M::mm_idx_gen::80.539*2.52] sorted minimizers
[M::main::80.555*2.52] loaded/built the index for 179147 target sequence(s)
[M::mm_mapopt_update::82.428*2.49] mid_occ = 500
[M::mm_idx_stat] kmer size: 19; skip: 19; is_hpc: 0; #seq: 179147
[M::mm_idx_stat::83.738*2.47] distinct minimizers: 119066337 (25.96% are singletons); average occurrences: 6.639; average spacing: 9.826; total length: 7767523084
[M::worker_pipeline::519.722*65.57] mapped 794814 sequences
[M::worker_pipeline::820.321*76.75] mapped 863438 sequences
[M::worker_pipeline::1249.220*81.40] mapped 818172 sequences
[M::worker_pipeline::1471.510*83.11] mapped 825992 sequences
[M::worker_pipeline::1515.414*83.23] mapped 103550 sequences
[M::worker_pipeline::1930.340*84.05] mapped 773834 sequences
[M::worker_pipeline::2251.812*85.76] mapped 810983 sequences
[M::worker_pipeline::2588.748*83.68] mapped 727470 sequences
[M::worker_pipeline::2930.960*84.16] mapped 715910 sequences
[M::worker_pipeline::3344.357*85.29] mapped 841698 sequences
[M::worker_pipeline::3637.624*86.33] mapped 761575 sequences
[M::worker_pipeline::3961.530*87.12] mapped 761993 sequences
[M::worker_pipeline::4134.061*87.23] mapped 560139 sequences
[M::worker_pipeline::4599.259*87.56] mapped 701950 sequences
[M::worker_pipeline::4839.480*88.07] mapped 838958 sequences
[M::worker_pipeline::5155.596*88.65] mapped 778590 sequences
[M::worker_pipeline::5426.184*89.10] mapped 778393 sequences
[M::worker_pipeline::5827.129*89.65] mapped 789754 sequences
[M::worker_pipeline::6100.819*90.02] mapped 824057 sequences
[M::worker_pipeline::6419.698*90.32] mapped 743023 sequences
[M::worker_pipeline::6580.595*90.39] mapped 444743 sequences
[M::main] Version: 2.24-r1155-dirty
[M::main] CMD: flye-minimap2 -x map-hifi -t 100 -a -p 0.5 -N 10 --sam-hit-only -L -K 5G -z 1000 -Q --secondary-seq -I 64G /mmfs1/gscratch/scrubbed/samwhite/gitrepos/RobertsLab/project-lake-trout/output/13.1-genome-assembly-siscowet/00-assembly/draft_assembly.fasta /mmfs1/gscratch/scrubbed/samwhite/gitrepos/RobertsLab/project-lake-trout/data/pacbio-siscowet/m84082_250614_081210_s3.hifi_reads.demux.bc2071--bc2071.fastq.gz /mmfs1/gscratch/scrubbed/samwhite/gitrepos/RobertsLab/project-lake-trout/data/pacbio-siscowet/m84082_250614_081210_s3.hifi_reads.demux.bc2072--bc2072.fastq.gz /mmfs1/gscratch/scrubbed/samwhite/gitrepos/RobertsLab/project-lake-trout/data/pacbio-siscowet/m84082_250614_101514_s4.hifi_reads.demux.bc2073--bc2073.fastq.gz /mmfs1/gscratch/scrubbed/samwhite/gitrepos/RobertsLab/project-lake-trout/data/pacbio-siscowet/m84082_251001_025627_s2.hifi_reads.bc2096.fastq.gz
[M::main] Real time: 6583.664 sec; CPU: 594790.958 sec; Peak RSS: 116.174 GB
[bam_sort_core] merging from 36 files and 4 in-memory blocks...