[samfaipath] build FASTA index...
[M::mm_idx_gen::39.231*1.39] collected minimizers
[M::mm_idx_gen::45.294*1.87] sorted minimizers
[M::main::45.303*1.87] loaded/built the index for 112562 target sequence(s)
[M::mm_mapopt_update::47.196*1.83] mid_occ = 500
[M::mm_idx_stat] kmer size: 19; skip: 19; is_hpc: 0; #seq: 112562
[M::mm_idx_stat::48.539*1.81] distinct minimizers: 111960697 (66.59% are singletons); average occurrences: 3.678; average spacing: 9.826; total length: 4046369763
[M::worker_pipeline::1734.136*30.42] mapped 213582 sequences
[M::main] Version: 2.24-r1155-dirty
[M::main] CMD: flye-minimap2 -x map-hifi -t 32 -a -p 0.5 -N 10 --sam-hit-only -L -K 5G -z 1000 -Q --secondary-seq -I 64G /mmfs1/gscratch/scrubbed/samwhite/gitrepos/RobertsLab/project-lake-trout/output/13.1-genome-assembly-lean/40-polishing/filtered_contigs.fasta /mmfs1/gscratch/scrubbed/samwhite/gitrepos/RobertsLab/project-lake-trout/output/13.1-genome-assembly-lean/30-contigger/graph_final.fasta
[M::main] Real time: 1734.437 sec; CPU: 52751.972 sec; Peak RSS: 40.765 GB
[bam_sort_core] merging from 0 files and 4 in-memory blocks...