[samfaipath] build FASTA index...
[M::mm_idx_gen::69.083*1.44] collected minimizers
[M::mm_idx_gen::74.621*1.98] sorted minimizers
[M::main::74.635*1.98] loaded/built the index for 197357 target sequence(s)
[M::mm_mapopt_update::76.742*1.96] mid_occ = 500
[M::mm_idx_stat] kmer size: 19; skip: 19; is_hpc: 0; #seq: 197357
[M::mm_idx_stat::78.055*1.94] distinct minimizers: 117488295 (28.35% are singletons); average occurrences: 6.293; average spacing: 9.837; total length: 7273232087
[M::worker_pipeline::1094.772*28.27] mapped 611901 sequences
[M::worker_pipeline::2166.314*29.94] mapped 694490 sequences
[M::worker_pipeline::3070.855*30.41] mapped 651040 sequences
[M::worker_pipeline::4068.007*30.72] mapped 645358 sequences
[M::worker_pipeline::5139.458*30.64] mapped 656202 sequences
[M::worker_pipeline::6059.988*30.55] mapped 728841 sequences
[M::worker_pipeline::6882.864*30.48] mapped 619801 sequences
[M::worker_pipeline::7760.333*30.48] mapped 805299 sequences
[M::worker_pipeline::8669.914*30.59] mapped 815518 sequences
[M::worker_pipeline::9490.376*30.68] mapped 816424 sequences
[M::worker_pipeline::10216.968*30.63] mapped 582380 sequences
[M::worker_pipeline::10997.636*30.60] mapped 1159682 sequences
[M::worker_pipeline::11847.172*30.66] mapped 1183868 sequences
[M::worker_pipeline::12418.919*30.67] mapped 944072 sequences
[M::main] Version: 2.24-r1155-dirty
[M::main] CMD: flye-minimap2 -x map-hifi -t 32 -a -p 0.5 -N 10 --sam-hit-only -L -K 5G -z 1000 -Q --secondary-seq -I 64G /mmfs1/gscratch/scrubbed/samwhite/gitrepos/RobertsLab/project-lake-trout/output/13.1-genome-assembly-lean/00-assembly/draft_assembly.fasta /mmfs1/gscratch/scrubbed/samwhite/gitrepos/RobertsLab/project-lake-trout/data/pacbio-lean/m84082_250614_081210_s3.hifi_reads.demux.bc2041--bc2041.fastq.gz /mmfs1/gscratch/scrubbed/samwhite/gitrepos/RobertsLab/project-lake-trout/data/pacbio-lean/m84082_250614_101514_s4.hifi_reads.demux.bc2069--bc2069.fastq.gz /mmfs1/gscratch/scrubbed/samwhite/gitrepos/RobertsLab/project-lake-trout/data/pacbio-lean/m84082_250614_101514_s4.hifi_reads.demux.bc2070--bc2070.fastq.gz /mmfs1/gscratch/scrubbed/samwhite/gitrepos/RobertsLab/project-lake-trout/data/pacbio-lean/m84082_251001_025627_s2.hifi_reads.bc2068.fastq.gz
[M::main] Real time: 12420.288 sec; CPU: 380901.352 sec; Peak RSS: 71.602 GB
[bam_sort_core] merging from 24 files and 4 in-memory blocks...