FastQCFastQC Report
Tue 22 Apr 2025
Site5J_S107_L001_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSite5J_S107_L001_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70
Total Bases10.7 kbp
Sequences flagged as poor quality0
Sequence length112-281
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACCGATTGAATGTCATAGTGAGGTCCTCGGACTGTTTGGTTGGCGGAT2840.0No Hit
CTACCGATTGAATGGTCCGGTGAGGCCTCGGGATTGTGGCCCCCGCCATT811.428571428571429No Hit
CTACCGATTGAGTGTTTTAGTGAGGTCCTCGGATTGTTTGCCTGGTGGCT57.142857142857142No Hit
CTACCGATTGAACGTTTTAGTGAGGTCCTCGGACTGTTTGGTAGGCGGAT22.857142857142857No Hit
CTACCGATTGAACGTTTTAGTGAGGTCCTCGGACTGTTTGCCTGGCGGAT22.857142857142857No Hit
CTACCGATTTGAGTGGTCCGGTGAATCTTTTGGACTGTGCACGGCTTCGT22.857142857142857No Hit
CTACCGATTGAATGGTCCGGTGAAGCCTCGGGATTGTGGCCAGTTTCCTT11.4285714285714286No Hit
CTACCGATTGAACGTTTTAGTGAGGTCCACGGACTGTATGACTGGCGCAT11.4285714285714286No Hit
CTACTGATTGGGTGCTTAGGTGAGGGCTTTGGAGCACGTGTGTGTGCGGG11.4285714285714286No Hit
CTACCGATTGAATGTTTCGGTGAAGATTCCGGACCGTGGCTTGTGCGCTT11.4285714285714286No Hit
CTACCGATTGAGTGATCCGGTGAATAATTCGGACCGCGGCAATGCTTGGA11.4285714285714286No Hit
CTACCGATTTCGAGTGGTCCGGTGAATCTTTTGGACTGCGCGCGGCCTCG11.4285714285714286No Hit
CTACCGATTGAACATTTTAGTGAGGTCCTCGGACTGTGAGCCAGGCGGGT11.4285714285714286No Hit
TACCGATTGAGTGTTTTAGTGAGGTCCTCGGATTGTTTGCCTGGTGGCTA11.4285714285714286No Hit
CTACCGATTGAATGGTCCGGTGAGGACTCGGGATTGTGGTTTAGCTCCTT11.4285714285714286No Hit
TCCTCCTCTAAGTCATATTACGAGCCACTCTGGTGGTGCAGTTGATTTAG11.4285714285714286No Hit
CTGCCGATTGAATGGTCCGGTGGAATCTTCGGATCTGAGAGATGTTGGAT11.4285714285714286No Hit
TCCTCCTTTAAGTAGTGCACAGGCTCATTCTGGGCCTGCCGTAGACCTTG11.4285714285714286No Hit
CTACCGATTGAATTATGAGGTGAATTGCTCGGATTCTGTTGTGTCTCTTG11.4285714285714286No Hit
CTACCGATTTCGAGTGGTCCGGTGAATCTTTCGGACTGTGCTTGGTCTTG11.4285714285714286No Hit
CATCTTAGTTGGGGGTGGGTGAGGCTGCGCTTTATGGCGTATTCGAGCCT11.4285714285714286No Hit
CTACCGATTGAGTGATCCGGTGAATAATTCGGACTGCAGCAGTGCTTGGT11.4285714285714286No Hit
CTACCGATTGAATGTCATAGTGAGGTCCTCTGACTCTTTGGTTGTCGGAT11.4285714285714286No Hit
CTACCGATTGAATGGTCCGGTGAGGCCTCGAGATCGTGGCAAGCTTTCTT11.4285714285714286No Hit
CCCTCCTCTAAGTCATATTACGAGCCACTCTGGTGGTGCAGTTGATTTAG11.4285714285714286No Hit
CTACCGATTGAATGGTCTGGTGAGGCCTCGGGATTGTGGCCCCCGCCATT11.4285714285714286No Hit
CTACCGATTGGATGGTTTAGTGAGATCCTCGGATTGGACCCTGCATGGTG11.4285714285714286No Hit
CTACCGATTGAATGTTTTAGTGAGACGCACGGACTGTTGAAGCACCATTG11.4285714285714286No Hit
CTACCGATTTCGAGTGGTCCGGTGAATCTTTCGGACTGCGCGCGGCTTCG11.4285714285714286No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)