FastQCFastQC Report
Tue 22 Apr 2025
Site1q_S106_L001_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSite1q_S106_L001_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences151517
Total Bases22.7 Mbp
Sequences flagged as poor quality0
Sequence length51-281
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACCGATTGAATGGTCCGGTGAGGCCTCGGGATTGTGGCCCCCGCCATT3063220.21687335414508No Hit
CTACCGATTGAATGGTCCGGTGAGGCCTCGAGATCGTGGCAAGCTTTCTT2320915.317753123411896No Hit
CTACCGATTGAATGGTCCGGTGAAGCCTCGGGATTGTGATGAGTTTCCTT46653.078862437878258No Hit
CTACCGATTGAACATTTTAGTGAGGTCCTCGGACTGTGAGCCAGGCGGGT36752.425470409261007No Hit
CTACTGATTGGATGATTAAGCAAGAACTCCTGAAACTTGCAGCTCCGGTT34182.255852478599761No Hit
CTACCGATTGAATGGTCCGGTGAAGCCTCGGGATTGTGATGAGTCTCCTT33242.1938132354785274No Hit
CTACCGATTGAATGGTCCGGTGAAGCCTCGGGATTGTGGCCAGTTCACTT29721.961496069747949No Hit
CTACCGATGGATGATTTGGTGAGGTCGCCTAGACTGGCCGCTGGCTTCGG16311.0764468673482184No Hit
CTACCGATTTCGAGTGGTCCGGTGAATCTTTCGGACTGCGCGCGGCTTCG15050.993287881887841No Hit
CTACCGATTGAATGGTCCGGTGAGGACTCGGGATTGTGGTTTAGCTCCTT14340.9464284535728664No Hit
CTACCGATTGGATGGTTTAGTGAGATCCTCGGATTGGACCCTGCATGGTG13560.8949490816212041No Hit
CTACCGATTGAATGATTCGGTGAAAATCTCGGACTTTGGCATGGAACTTT13250.8744893312301589No Hit
CTACCGATTGAATGTTTCGGTGAAGATTCCGGACCGCGACGCCAGAGCGC12020.7933103216140763No Hit
CTACCGATTGGGTGTACCAGTGAGATCCTTGGACTGGCGAGCCTTGTGCG11490.7583307483648699No Hit
CTACCGATTGAGTGGTCCGGTGAGATCTCGGGATTGATGCCTGGTGCCTT10980.7246711590118601No Hit
CTACCGATTGAATGGTTTAGTGAGATCTTCGGATTGGCGCCATCGTGGCT10800.7127913039460918No Hit
CTACCGATGGATGATTTGGTGAGGTCGCCTAGACCGGACGCTGGCTTCGG10260.6771517387487873No Hit
CTACCGATCGAGTGTTTAGGTGAATTTGATGGACGTAAGGAAGTCAAATA9800.6467921091362685No Hit
CTACCGATTGGATGGCTTAATGAGATCTCTGGATCTCTGCCGGCGCGGTC8960.591352785496017No Hit
CTACCGATTGAATCATTCGGTGAGGATCTCGGATTTTGTTGCTTACGCTT8380.5530732525063194No Hit
CTACCGATTGGATGGTTTAGTGAGATCCTCGGATTGGCCCCGGCATTCGG7480.49367397717747846No Hit
CTACCGATTGAATGGCTTAGTGAGCTCTCTGGACTGTGTTGCGTGTCGTA6800.4487945247067986No Hit
CTACCGATTGAATGGTCCGGTGAAGCCTCGGGATTGTGGCGAGTTTCCTT5910.39005524132605585No Hit
CTACCGATTGAACGTTTTAGTGAGGCATTTGGACTGGGCCTTTGGAGGTT5820.3841153137931717No Hit
CTACCGATTGAATGGTCCGGTGAAGCCTCGGGATTGTGGCCAGTTTCCTT5810.3834553218450735No Hit
CTACCGATTGAATGTTTCGGTGAAGATTCCGGACTGTGGCTCGCGTGCTT5200.34319581301108126No Hit
CTACCGATTTGAGTGGTCCGGTGAATCTTTTGGACTGTGCACGGCTTCGT5180.3418758291148848No Hit
CTACCGATTGAATGGTCCGGTGAAGTGTTCGGATAGCGGCAAGGCGGACG5140.33923586132249184No Hit
CTACCGATTGAATGGTTTAGTGAGGTCATCGGATTGGGCGCATGAGAGTG5070.33461591768580423No Hit
CTACCGATTGAACGGTTTAGTGAGACCCTCGGATTGGTCCCGGTACGGGG4580.3022763122289908No Hit
CATCTTAGTTGTGGGTGGGTGAGGCTACCTCTCTATGGGGTATTCGAGCC4230.2791765940455526No Hit
CTACCGATTGAATGGTCCGGTGAAGCCTCGGGATTGTGACCAGTTTCCTT4210.2778566101493562No Hit
CGACCGATTGTTCCAGTTAATGAGCGATATGGATGAGTCCCGTGATCGGC4200.27719661820125796No Hit
CTACCGATTTCGAGTGGTCCGTTGAATCTTTCGGACTGCGCATAGCTTCG4090.2699367067721774No Hit
CTACCGATTGAATGGTCCGGTGAGGACTCGGGATTGTGGTTTGGCTCCTT3970.26201680339499855No Hit
CTACCGATTGAACGTTTTAGTGAGGTATTTGGACTGGAACTTTGTTGGCT3940.26003682755070384No Hit
CTACCGATTGAATGGTCCGGTGAAGCCTCGGGATTGTGACCAGTGCCTTT3810.2514569322254268No Hit
CTACCGATTGAATGGTCCGGTGAAGCGTTCGGACCGCTTCCTTTGGACGG3690.24353702884824807No Hit
CTACCGATTGAATGGTTTAGTGAGATCCTCGGATTGGTCGCGGCTCGTCT3480.22967719793818517No Hit
CTACCGATTGAATGGTTTAGTGAGATCCTCGGATTGGTCCCGGCATGGTG3390.22373727040530103No Hit
CTACCGATTGAATGGTCCGGTGAAGCCTCGGGATTGTGGCCGGTGCCTTA3320.21911732676861342No Hit
CTACCGATTGAGTGATCCGGTGAATAATTCGGACTGCAGCAGTGTTCAGT3110.20525749585855055No Hit
CTACCGATTGAATGGTTTAGTGAGACCCTCGGATTTGTCCCAGCAGGGTG3020.1993175683256664No Hit
CAACTGATTGGATGACTCGGTGAAAAATTGGGACTGTGAAGAGACCTGCT2980.19667760053327352No Hit
CTACCGATTGAGTGATCCGGTGAACTTTTTGGACGTTGGCGAATGCTGAG2870.18941768910419293No Hit
CATCTTAGTTGGGGGTGGGTGAGGCTGCGCTTTATGGCGTATTCGAGCCT2850.18809770520799649No Hit
CTACCGATTGAATGGCTTAGTGAGCTCTCTGGACTGTTGCATTCCGTTGG2760.18215777767511238No Hit
CTACCGATTGAATGGCCCGGTGAAGACCTGGGACTACTGTCGTGGATTTA2700.17819782598652295No Hit
CTACCGATTGAATGGTCCGGTGAAATCTTCGGATTGCTGGGTAGGACTTC2680.1768778420903265No Hit
CTACCGATTGAATGGTCCGGTGAAGCGCTCGGACCGCGGCCTCTTGACGG2660.17555785819413003No Hit
GTACCGATTTCGAGTGGTCCGGTGAACCTTTCGGACTGGGGAAGCCTTGA2640.17423787429793355No Hit
CTACCGATTGAGTGATCCGGTGAATAATTCGGACCGCAGCAATGTTTGGA2630.17357788234983534No Hit
CTACCGATTTCGAGTGGTCCGGTGAATCTTTCGGACTGTGCTTGGTCTTG2610.17225789845363887No Hit
CTACCGATTTCGAGTGGTCCGGTGAATCTTTCGGACTGCGCGCAGCTTCG2580.17027792260934416No Hit
CTACCGATTGAATGGTCCGGTGAGGCCTTGGGATCGTGGCGAGTTTCCTT2570.16961793066124592No Hit
CTACCGATTGAATGGTCCGGTGAAGCCTCGGGATTGTGGCGAGTTCCCTT2570.16961793066124592No Hit
CTACCGATTGAACGTTTTAGTGAGGTATTTGGACTGGAATTAGGTTAGTT2550.16829794676504947No Hit
CTACCGATTGAATGGTCCGGTGAAGACTCGAGATTTTGGCTTAGTTGCTT2520.16631797092075476No Hit
CTACCGATTGAATGGTCCGGTGAAATCTTCGGATTGCTGGATAGGAGGGC2510.16565797897265655No Hit
CTACCGATTGAGTGATCCGGTGAATAATTCGGACTGCAGCAGTGTTCGGC2500.1649979870245583No Hit
CTACCGATTTCGAGTGGTCCGGTGAGCCTTTCGGACTGTGGCGGCCTCGA2450.16169802728406713No Hit
CTACCGATTGAACGTTTTAGTGAGGTATTTGGACTGGACCTGGTCGGGTT2380.15707808364737952No Hit
CTACCGATTGAATGGTCCGGTGAAGCGTTCGGACTATGACTCTCTGACGG2340.15443811585498657No Hit
CTACCGATTGAATGGTCCGGTGAGGCCTTGGGATTGTGGTCTGTTTCCTT2330.15377812390688833No Hit
CTATCGATTGAGCGGTTCAGTGAGGGCCTCGGATTGGTCACGGTCTGGCA2300.15179814806259365No Hit
CTACCGATTTCGAGTGGTCCGGTGAATCTTTTGGACTGCGCAGAGCTTCG2270.14981817221829893No Hit
CTACCGATTTCGAGTGGTCCGGTGAATCTTTTGGACTGCGCACGGCTTCG2160.14255826078921838No Hit
CTACCGATTGAGTGATCCGGTGAATAATTCGGACCGCGGCAATGCTTGGA2110.13925830104872722No Hit
CTACCGATTGAATGGTCCGGTGAGGCCTCGAGATTGTGGCAAGCTTTCTT2100.13859830910062898No Hit
CTACCGATTGAATGGTCCGGTGAGGCCTCGGGATTGTGGCCAGTTCACTT2040.13463835741203958No Hit
CTACCGATTGAATGGTTTAGTGAGATCTTCGGATTGCTGGCTCGGCGGCC1800.11879855065768197No Hit
CTACCGATTGAATGGTCCGGTGAAATCTTCGGATTGCTGGCTAGGACTTG1740.11483859896909258No Hit
TCCTCCATTATCTAGTGGTAATTCTCATTCAGGTCCTGCGGTAGATTTAG1670.11021865533240494No Hit
CTACCGATTGAATGGTCCGGTGAAGCCTCGGGATTGGATTCAATGCCTTT1650.10889867143620847No Hit
CTACCGATTGAATGGTTCAGTGAGATAATCGGATAGGTAACTCGGTAAGC1610.10625870364381555No Hit
TCCTCCATTGTCTAGTATCACAGCACACTCAGGTGGAGCTGTTGATTTAG1610.10625870364381555No Hit
CTACCGATTGAATGGTTTAGTGAGATCTCCGGATTGGCGCCATCGCGGCT1580.10427872779952085No Hit
CTACCGATTGAATGGTCCGGTGAAGACTCGAGACTGTGGTCTGGCTCCTT1570.10361873585142262No Hit
TCCCCCATTATCTAGTGGTAATTCTCATTCAGGTCCTGCGGTAGATTTAG1550.10229875195522614No Hit
CTACCGATTGAACGTTCCGGTGAGACCTTTGGATCTGCTGATGTGGGGCG1530.10097876805902968No Hit
CTACCGATTGAATGGTCCGGTGAAGCCTCGGGATTGTGATCGTTGCCTTT1520.10031877611093144No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)